EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000086327 (Gene tree)
Gene ID: 796574
Gene Symbol: srrm4
Alias: ZnSR100|im:7136231|si:dkey-1k23.1
Full Name: serine/arginine repetitive matrix 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 149331 bases
Position: chr5:15667874-15817204
Accession: ZDB-GENE-050208-34
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136286	SRRM_C	PF15230.6	3.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127015	-	12025	XM_021476415	ENSDARP00000136286	574 (aa)	XP_021332090	A0A0R4IL26
ENSDART00000145273	-	1530	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000086327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000086327's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000086327	srrm4	59	49.719	ENSAPOG00000010969	srrm4	85	47.201	Acanthochromis_polyacanthus
ENSDARG00000086327	srrm4	59	48.870	ENSAOCG00000019891	srrm4	85	47.103	Amphiprion_ocellaris
ENSDARG00000086327	srrm4	59	48.870	ENSAPEG00000011132	srrm4	85	47.103	Amphiprion_percula
ENSDARG00000086327	srrm4	87	53.802	ENSAMXG00000038719	srrm4	92	53.125	Astyanax_mexicanus
ENSDARG00000086327	srrm4	59	47.175	ENSHBUG00000010505	srrm4	57	47.500	Haplochromis_burtoni
ENSDARG00000086327	srrm4	86	45.508	ENSKMAG00000001873	srrm4	58	45.352	Kryptolebias_marmoratus
ENSDARG00000086327	srrm4	87	47.368	ENSLBEG00000008471	srrm4	86	46.324	Labrus_bergylta
ENSDARG00000086327	srrm4	59	45.777	ENSLOCG00000003219	srrm4	58	49.722	Lepisosteus_oculatus
ENSDARG00000086327	srrm4	59	48.588	ENSMALG00000001422	srrm4	62	48.588	Monopterus_albus
ENSDARG00000086327	srrm4	86	42.582	ENSOMEG00000012376	srrm4	59	43.164	Oryzias_melastigma
ENSDARG00000086327	srrm4	87	59.302	ENSPNAG00000010426	srrm4	89	57.570	Pygocentrus_nattereri
ENSDARG00000086327	srrm4	86	47.925	ENSXMAG00000002658	srrm4	59	49.474	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0006397	mRNA processing	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006397	mRNA processing	19737518.	IMP	Process
GO:0007399	nervous system development	-	ISS	Process
GO:0007409	axonogenesis	19737518.	IMP	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0021754	facial nucleus development	25769695.	IGI	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0042551	neuron maturation	21873635.	IBA	Process
GO:0042551	neuron maturation	25769695.	IGI	Process
GO:0043484	regulation of RNA splicing	21873635.	IBA	Process
GO:0043484	regulation of RNA splicing	19737518.	IMP	Process