EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000086411 (Gene tree)
Gene ID: 393505
Gene Symbol: srsf10b
Alias: zgc:65772|zgc:77372
Full Name: serine/arginine-rich splicing factor 10b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6388 bases
Position: chr17:53427931-53434318
Accession: ZDB-GENE-040426-1415
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000091866	RRM_1	PF00076.22	1.3e-16	1	1
ENSDARP00000150144	RRM_1	PF00076.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000192509	-	747	-	ENSDARP00000150144	248 (aa)	-	Q7SZS0
ENSDART00000101091	-	1215	-	ENSDARP00000091866	248 (aa)	-	Q7SZS0

Gene Model

Click here to download ENSDARG00000086411's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000086411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000086411	srsf10b	74	30.435	ENSDARG00000035325	srsf7a	88	34.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000086411	srsf10b	64	77.987	ENSG00000188529	SRSF10	90	77.419	Homo_sapiens
ENSDARG00000086411	srsf10b	63	77.707	ENSBTAG00000054307	-	54	82.727	Bos_taurus
ENSDARG00000086411	srsf10b	55	78.832	ENSCHIG00000000308	-	61	81.818	Capra_hircus
ENSDARG00000086411	srsf10b	64	77.987	ENSTSYG00000009439	-	67	83.636	Carlito_syrichta
ENSDARG00000086411	srsf10b	54	79.412	ENSCAPG00000014746	SRSF10	54	87.356	Cavia_aperea
ENSDARG00000086411	srsf10b	64	77.987	ENSCPOG00000034102	SRSF10	60	83.636	Cavia_porcellus
ENSDARG00000086411	srsf10b	64	77.987	ENSCCAG00000022497	SRSF10	90	77.419	Cebus_capucinus
ENSDARG00000086411	srsf10b	64	77.987	ENSCATG00000031598	SRSF10	67	83.636	Cercocebus_atys
ENSDARG00000086411	srsf10b	64	77.987	ENSCLAG00000015555	SRSF10	60	83.636	Chinchilla_lanigera
ENSDARG00000086411	srsf10b	64	77.358	ENSCHOG00000007773	-	67	82.727	Choloepus_hoffmanni
ENSDARG00000086411	srsf10b	55	78.986	ENSCANG00000042227	-	61	87.356	Colobus_angolensis_palliatus
ENSDARG00000086411	srsf10b	64	77.987	ENSCGRG00001017946	Srsf10	60	83.636	Cricetulus_griseus_chok1gshd
ENSDARG00000086411	srsf10b	96	62.343	ENSDORG00000024574	Srsf10	60	83.636	Dipodomys_ordii
ENSDARG00000086411	srsf10b	64	77.987	ENSFCAG00000045556	SRSF10	67	83.636	Felis_catus
ENSDARG00000086411	srsf10b	64	76.101	ENSFDAG00000019418	SRSF10	100	56.870	Fukomys_damarensis
ENSDARG00000086411	srsf10b	57	83.444	ENSGAFG00000014771	srsf10b	62	86.207	Gambusia_affinis
ENSDARG00000086411	srsf10b	56	59.712	ENSGGOG00000042323	-	62	73.684	Gorilla_gorilla
ENSDARG00000086411	srsf10b	64	77.987	ENSGGOG00000000392	SRSF10	90	77.419	Gorilla_gorilla
ENSDARG00000086411	srsf10b	64	77.987	ENSHGLG00000010879	-	60	83.636	Heterocephalus_glaber_female
ENSDARG00000086411	srsf10b	64	77.987	ENSSTOG00000000956	SRSF10	60	83.636	Ictidomys_tridecemlineatus
ENSDARG00000086411	srsf10b	76	65.217	ENSJJAG00000009074	Srsf10	60	83.636	Jaculus_jaculus
ENSDARG00000086411	srsf10b	64	77.987	ENSMFAG00000046011	SRSF10	90	77.419	Macaca_fascicularis
ENSDARG00000086411	srsf10b	64	76.101	ENSMMUG00000038562	-	66	80.909	Macaca_mulatta
ENSDARG00000086411	srsf10b	64	77.987	ENSMNEG00000041500	SRSF10	67	83.636	Macaca_nemestrina
ENSDARG00000086411	srsf10b	96	51.883	ENSMLEG00000033834	-	63	63.551	Mandrillus_leucophaeus
ENSDARG00000086411	srsf10b	64	77.987	ENSMLEG00000016013	SRSF10	67	83.636	Mandrillus_leucophaeus
ENSDARG00000086411	srsf10b	100	62.055	ENSMZEG00005008188	SRSF10	100	62.451	Maylandia_zebra
ENSDARG00000086411	srsf10b	64	77.987	ENSMAUG00000019452	Srsf10	60	83.636	Mesocricetus_auratus
ENSDARG00000086411	srsf10b	64	77.987	ENSMICG00000047638	SRSF10	90	77.419	Microcebus_murinus
ENSDARG00000086411	srsf10b	64	77.987	ENSMICG00000017029	-	66	83.636	Microcebus_murinus
ENSDARG00000086411	srsf10b	64	76.875	ENSMODG00000013020	-	54	81.982	Monodelphis_domestica
ENSDARG00000086411	srsf10b	64	77.987	MGP_CAROLIEiJ_G0026645	Srsf10	60	83.636	Mus_caroli
ENSDARG00000086411	srsf10b	64	77.987	ENSMUSG00000028676	Srsf10	60	83.636	Mus_musculus
ENSDARG00000086411	srsf10b	64	77.987	MGP_SPRETEiJ_G0027625	-	60	83.636	Mus_spretus
ENSDARG00000086411	srsf10b	94	62.661	ENSMLUG00000005293	-	62	61.635	Myotis_lucifugus
ENSDARG00000086411	srsf10b	64	77.987	ENSNGAG00000000067	Srsf10	100	58.397	Nannospalax_galili
ENSDARG00000086411	srsf10b	64	77.987	ENSNLEG00000027520	SRSF10	67	83.636	Nomascus_leucogenys
ENSDARG00000086411	srsf10b	64	77.987	ENSPPAG00000032557	SRSF10	90	77.419	Pan_paniscus
ENSDARG00000086411	srsf10b	64	77.987	ENSPPRG00000005806	SRSF10	67	83.636	Panthera_pardus
ENSDARG00000086411	srsf10b	64	77.358	ENSPTIG00000014137	SRSF10	66	82.727	Panthera_tigris_altaica
ENSDARG00000086411	srsf10b	64	77.987	ENSPTRG00000044753	SRSF10	67	83.636	Pan_troglodytes
ENSDARG00000086411	srsf10b	64	77.987	ENSPANG00000021680	SRSF10	67	83.636	Papio_anubis
ENSDARG00000086411	srsf10b	57	84.106	ENSPREG00000008383	srsf10b	91	59.677	Poecilia_reticulata
ENSDARG00000086411	srsf10b	64	77.987	ENSPCOG00000022379	SRSF10	67	83.636	Propithecus_coquereli
ENSDARG00000086411	srsf10b	64	77.987	ENSRNOG00000007992	Srsf10	67	83.636	Rattus_norvegicus
ENSDARG00000086411	srsf10b	59	71.429	ENSRBIG00000044085	-	67	73.636	Rhinopithecus_bieti
ENSDARG00000086411	srsf10b	64	77.987	ENSRBIG00000028456	SRSF10	67	83.636	Rhinopithecus_bieti
ENSDARG00000086411	srsf10b	64	77.987	ENSRROG00000043248	SRSF10	67	83.636	Rhinopithecus_roxellana
ENSDARG00000086411	srsf10b	59	71.429	ENSRROG00000036002	-	67	73.636	Rhinopithecus_roxellana
ENSDARG00000086411	srsf10b	64	77.987	ENSSBOG00000019550	SRSF10	67	83.636	Saimiri_boliviensis_boliviensis
ENSDARG00000086411	srsf10b	100	61.719	ENSSMAG00000003165	SRSF10	100	62.500	Scophthalmus_maximus
ENSDARG00000086411	srsf10b	64	77.987	ENSSSCG00000036293	SRSF10	90	77.419	Sus_scrofa

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process