EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000086425 (Gene tree)
Gene ID: 403072
Gene Symbol: prpf3
Alias: HPRP3|wu:fa11f05
Full Name: PRP3 pre-mRNA processing factor 3 homolog (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 19854 bases
Position: chr16:9433738-9453591
Accession: ZDB-GENE-040823-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107223	PRP3	PF08572.10	4.9e-76	1	1
ENSDARP00000115813	PWI	PF01480.17	4.6e-13	1	1
ENSDARP00000107223	PWI	PF01480.17	3.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000136522	-	460	-	ENSDARP00000115813	140 (aa)	-	E9QJ65
ENSDART00000141696	-	801	-	-	- (aa)	-	-
ENSDART00000126154	-	2705	-	ENSDARP00000107223	699 (aa)	-	Q6DRF8

Gene Model

Click here to download ENSDARG00000086425's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000086425's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000086425	prpf3	99	72.688	ENSG00000117360	PRPF3	100	72.973	Homo_sapiens
ENSDARG00000086425	prpf3	100	81.135	ENSAPOG00000015584	prpf3	100	81.135	Acanthochromis_polyacanthus
ENSDARG00000086425	prpf3	99	72.688	ENSAMEG00000001630	PRPF3	100	72.973	Ailuropoda_melanoleuca
ENSDARG00000086425	prpf3	100	80.398	ENSACIG00000007876	prpf3	100	80.398	Amphilophus_citrinellus
ENSDARG00000086425	prpf3	100	81.534	ENSAOCG00000011449	prpf3	100	81.844	Amphiprion_ocellaris
ENSDARG00000086425	prpf3	100	80.939	ENSATEG00000023583	prpf3	100	80.939	Anabas_testudineus
ENSDARG00000086425	prpf3	99	73.826	ENSAPLG00000002440	PRPF3	100	74.148	Anas_platyrhynchos
ENSDARG00000086425	prpf3	99	72.908	ENSACAG00000003176	PRPF3	100	73.617	Anolis_carolinensis
ENSDARG00000086425	prpf3	99	72.688	ENSANAG00000026138	PRPF3	100	72.973	Aotus_nancymaae
ENSDARG00000086425	prpf3	100	81.402	ENSACLG00000020127	prpf3	100	81.402	Astatotilapia_calliptera
ENSDARG00000086425	prpf3	100	86.429	ENSAMXG00000007306	prpf3	100	85.028	Astyanax_mexicanus
ENSDARG00000086425	prpf3	99	72.688	ENSBTAG00000013946	PRPF3	100	72.973	Bos_taurus
ENSDARG00000086425	prpf3	81	38.529	WBGene00010844	prp-3	95	35.618	Caenorhabditis_elegans
ENSDARG00000086425	prpf3	99	72.688	ENSCJAG00000009926	PRPF3	100	72.973	Callithrix_jacchus
ENSDARG00000086425	prpf3	99	72.688	ENSCAFG00000011820	PRPF3	100	72.973	Canis_familiaris
ENSDARG00000086425	prpf3	100	66.667	ENSCAFG00020019653	PRPF3	100	72.487	Canis_lupus_dingo
ENSDARG00000086425	prpf3	99	72.688	ENSCHIG00000015434	PRPF3	100	72.973	Capra_hircus
ENSDARG00000086425	prpf3	99	72.831	ENSTSYG00000001383	PRPF3	100	73.115	Carlito_syrichta
ENSDARG00000086425	prpf3	93	62.844	ENSCAPG00000017812	PRPF3	95	62.844	Cavia_aperea
ENSDARG00000086425	prpf3	99	72.688	ENSCPOG00000008068	PRPF3	100	72.973	Cavia_porcellus
ENSDARG00000086425	prpf3	99	72.688	ENSCCAG00000026380	PRPF3	100	72.973	Cebus_capucinus
ENSDARG00000086425	prpf3	100	65.957	ENSCATG00000041778	PRPF3	100	60.876	Cercocebus_atys
ENSDARG00000086425	prpf3	99	72.831	ENSCLAG00000015009	PRPF3	100	73.115	Chinchilla_lanigera
ENSDARG00000086425	prpf3	100	67.376	ENSCHOG00000011645	PRPF3	76	81.752	Choloepus_hoffmanni
ENSDARG00000086425	prpf3	99	73.115	ENSCPBG00000008216	PRPF3	100	73.796	Chrysemys_picta_bellii
ENSDARG00000086425	prpf3	59	58.852	ENSCING00000003312	-	100	58.852	Ciona_intestinalis
ENSDARG00000086425	prpf3	80	52.951	ENSCSAVG00000008720	-	94	52.951	Ciona_savignyi
ENSDARG00000086425	prpf3	99	72.119	ENSCANG00000036769	PRPF3	100	72.404	Colobus_angolensis_palliatus
ENSDARG00000086425	prpf3	99	72.688	ENSCGRG00001019100	Prpf3	100	72.973	Cricetulus_griseus_chok1gshd
ENSDARG00000086425	prpf3	99	72.688	ENSCGRG00000007322	Prpf3	100	72.973	Cricetulus_griseus_crigri
ENSDARG00000086425	prpf3	100	78.470	ENSCSEG00000002532	prpf3	100	78.470	Cynoglossus_semilaevis
ENSDARG00000086425	prpf3	100	80.398	ENSCVAG00000009318	prpf3	100	80.398	Cyprinodon_variegatus
ENSDARG00000086425	prpf3	99	68.376	ENSDNOG00000005904	PRPF3	100	68.376	Dasypus_novemcinctus
ENSDARG00000086425	prpf3	93	72.588	ENSDORG00000008664	Prpf3	99	72.894	Dipodomys_ordii
ENSDARG00000086425	prpf3	81	52.890	FBgn0036915	Prp3	99	53.036	Drosophila_melanogaster
ENSDARG00000086425	prpf3	99	72.546	ENSETEG00000019124	PRPF3	100	72.831	Echinops_telfairi
ENSDARG00000086425	prpf3	100	61.745	ENSEBUG00000011680	prpf3	100	61.911	Eptatretus_burgeri
ENSDARG00000086425	prpf3	99	72.546	ENSEASG00005001566	PRPF3	100	72.831	Equus_asinus_asinus
ENSDARG00000086425	prpf3	99	72.688	ENSECAG00000019840	PRPF3	100	72.973	Equus_caballus
ENSDARG00000086425	prpf3	100	66.667	ENSEEUG00000007338	PRPF3	85	72.789	Erinaceus_europaeus
ENSDARG00000086425	prpf3	100	80.000	ENSELUG00000013624	prpf3	100	74.153	Esox_lucius
ENSDARG00000086425	prpf3	99	72.688	ENSFCAG00000013940	PRPF3	100	72.973	Felis_catus
ENSDARG00000086425	prpf3	99	72.546	ENSFDAG00000010365	PRPF3	100	72.831	Fukomys_damarensis
ENSDARG00000086425	prpf3	100	79.828	ENSFHEG00000021746	prpf3	100	79.828	Fundulus_heteroclitus
ENSDARG00000086425	prpf3	100	79.030	ENSGMOG00000008535	prpf3	100	79.030	Gadus_morhua
ENSDARG00000086425	prpf3	99	73.969	ENSGALG00000028205	PRPF3	100	74.290	Gallus_gallus
ENSDARG00000086425	prpf3	100	79.861	ENSGAFG00000012671	prpf3	100	79.801	Gambusia_affinis
ENSDARG00000086425	prpf3	100	80.512	ENSGACG00000011792	prpf3	100	80.512	Gasterosteus_aculeatus
ENSDARG00000086425	prpf3	99	73.115	ENSGAGG00000013765	PRPF3	100	74.823	Gopherus_agassizii
ENSDARG00000086425	prpf3	100	66.667	ENSGGOG00000013174	PRPF3	100	78.761	Gorilla_gorilla
ENSDARG00000086425	prpf3	100	81.545	ENSHBUG00000003493	prpf3	100	81.545	Haplochromis_burtoni
ENSDARG00000086425	prpf3	99	72.546	ENSHGLG00000016569	PRPF3	100	72.831	Heterocephalus_glaber_female
ENSDARG00000086425	prpf3	99	52.205	ENSHGLG00000016033	-	100	52.205	Heterocephalus_glaber_female
ENSDARG00000086425	prpf3	99	72.546	ENSHGLG00100007590	PRPF3	100	72.831	Heterocephalus_glaber_male
ENSDARG00000086425	prpf3	99	52.205	ENSHGLG00100008951	-	100	52.205	Heterocephalus_glaber_male
ENSDARG00000086425	prpf3	100	75.672	ENSHCOG00000014058	prpf3	100	76.379	Hippocampus_comes
ENSDARG00000086425	prpf3	100	85.000	ENSIPUG00000000902	PRPF3	100	83.048	Ictalurus_punctatus
ENSDARG00000086425	prpf3	99	72.688	ENSSTOG00000001889	PRPF3	100	72.973	Ictidomys_tridecemlineatus
ENSDARG00000086425	prpf3	100	80.556	ENSKMAG00000001390	prpf3	100	79.830	Kryptolebias_marmoratus
ENSDARG00000086425	prpf3	100	80.512	ENSLBEG00000026310	prpf3	100	80.512	Labrus_bergylta
ENSDARG00000086425	prpf3	100	70.000	ENSLACG00000010541	PRPF3	100	69.924	Latimeria_chalumnae
ENSDARG00000086425	prpf3	99	72.688	ENSLAFG00000004713	PRPF3	100	72.973	Loxodonta_africana
ENSDARG00000086425	prpf3	99	72.688	ENSMFAG00000039791	PRPF3	100	72.973	Macaca_fascicularis
ENSDARG00000086425	prpf3	100	66.667	ENSMMUG00000016301	PRPF3	97	73.768	Macaca_mulatta
ENSDARG00000086425	prpf3	99	72.688	ENSMNEG00000038161	PRPF3	100	72.973	Macaca_nemestrina
ENSDARG00000086425	prpf3	100	65.957	ENSMLEG00000040609	PRPF3	100	78.761	Mandrillus_leucophaeus
ENSDARG00000086425	prpf3	98	48.063	ENSMLEG00000041065	-	97	48.355	Mandrillus_leucophaeus
ENSDARG00000086425	prpf3	100	81.250	ENSMAMG00000014968	prpf3	100	80.256	Mastacembelus_armatus
ENSDARG00000086425	prpf3	100	81.223	ENSMZEG00005015970	prpf3	100	81.223	Maylandia_zebra
ENSDARG00000086425	prpf3	99	73.969	ENSMGAG00000000707	PRPF3	100	74.290	Meleagris_gallopavo
ENSDARG00000086425	prpf3	99	72.546	ENSMAUG00000017112	Prpf3	100	73.115	Mesocricetus_auratus
ENSDARG00000086425	prpf3	99	72.546	ENSMICG00000015386	PRPF3	100	74.113	Microcebus_murinus
ENSDARG00000086425	prpf3	99	72.688	ENSMOCG00000000242	Prpf3	100	72.973	Microtus_ochrogaster
ENSDARG00000086425	prpf3	100	75.035	ENSMMOG00000016131	prpf3	100	75.354	Mola_mola
ENSDARG00000086425	prpf3	99	72.546	ENSMODG00000018774	PRPF3	100	73.229	Monodelphis_domestica
ENSDARG00000086425	prpf3	100	78.472	ENSMALG00000007257	prpf3	100	77.669	Monopterus_albus
ENSDARG00000086425	prpf3	99	72.404	MGP_CAROLIEiJ_G0025354	Prpf3	100	72.688	Mus_caroli
ENSDARG00000086425	prpf3	99	72.404	ENSMUSG00000015748	Prpf3	100	72.688	Mus_musculus
ENSDARG00000086425	prpf3	99	72.546	MGP_PahariEiJ_G0026798	Prpf3	100	72.831	Mus_pahari
ENSDARG00000086425	prpf3	99	72.404	MGP_SPRETEiJ_G0026298	Prpf3	100	72.688	Mus_spretus
ENSDARG00000086425	prpf3	99	72.017	ENSMPUG00000005080	PRPF3	100	72.301	Mustela_putorius_furo
ENSDARG00000086425	prpf3	99	72.443	ENSMLUG00000004646	-	100	72.727	Myotis_lucifugus
ENSDARG00000086425	prpf3	99	72.688	ENSNGAG00000000910	Prpf3	100	72.973	Nannospalax_galili
ENSDARG00000086425	prpf3	100	80.309	ENSNBRG00000003462	prpf3	100	80.309	Neolamprologus_brichardi
ENSDARG00000086425	prpf3	100	66.667	ENSNLEG00000009841	PRPF3	99	73.768	Nomascus_leucogenys
ENSDARG00000086425	prpf3	83	64.602	ENSMEUG00000008733	PRPF3	89	65.497	Notamacropus_eugenii
ENSDARG00000086425	prpf3	99	72.546	ENSOPRG00000010139	PRPF3	100	72.831	Ochotona_princeps
ENSDARG00000086425	prpf3	99	72.546	ENSODEG00000011363	-	100	72.831	Octodon_degus
ENSDARG00000086425	prpf3	99	53.782	ENSODEG00000014412	-	100	54.202	Octodon_degus
ENSDARG00000086425	prpf3	100	81.366	ENSONIG00000006394	prpf3	100	81.366	Oreochromis_niloticus
ENSDARG00000086425	prpf3	99	57.020	ENSOANG00000015441	PRPF3	100	57.225	Ornithorhynchus_anatinus
ENSDARG00000086425	prpf3	99	72.688	ENSOCUG00000011760	PRPF3	100	72.973	Oryctolagus_cuniculus
ENSDARG00000086425	prpf3	100	79.943	ENSORLG00000010330	prpf3	100	79.943	Oryzias_latipes
ENSDARG00000086425	prpf3	100	79.943	ENSORLG00020009054	prpf3	100	79.943	Oryzias_latipes_hni
ENSDARG00000086425	prpf3	100	79.861	ENSORLG00015015016	prpf3	100	79.801	Oryzias_latipes_hsok
ENSDARG00000086425	prpf3	100	80.228	ENSOMEG00000000940	prpf3	100	80.228	Oryzias_melastigma
ENSDARG00000086425	prpf3	99	68.608	ENSOGAG00000005352	PRPF3	100	68.892	Otolemur_garnettii
ENSDARG00000086425	prpf3	99	72.688	ENSOARG00000020798	PRPF3	100	72.973	Ovis_aries
ENSDARG00000086425	prpf3	99	72.546	ENSPPAG00000030983	PRPF3	100	72.831	Pan_paniscus
ENSDARG00000086425	prpf3	98	56.503	ENSPPAG00000043769	-	99	55.925	Pan_paniscus
ENSDARG00000086425	prpf3	99	72.688	ENSPPRG00000000731	PRPF3	100	72.973	Panthera_pardus
ENSDARG00000086425	prpf3	99	72.688	ENSPTIG00000005516	PRPF3	100	72.973	Panthera_tigris_altaica
ENSDARG00000086425	prpf3	98	55.636	ENSPTRG00000047819	-	99	55.058	Pan_troglodytes
ENSDARG00000086425	prpf3	99	72.688	ENSPTRG00000001254	PRPF3	100	72.973	Pan_troglodytes
ENSDARG00000086425	prpf3	99	72.546	ENSPANG00000000499	PRPF3	100	72.831	Papio_anubis
ENSDARG00000086425	prpf3	100	82.979	ENSPKIG00000010501	prpf3	100	81.223	Paramormyrops_kingsleyae
ENSDARG00000086425	prpf3	99	73.647	ENSPSIG00000014877	PRPF3	100	73.932	Pelodiscus_sinensis
ENSDARG00000086425	prpf3	100	72.222	ENSPMGG00000007776	prpf3	100	72.507	Periophthalmus_magnuspinnatus
ENSDARG00000086425	prpf3	99	72.688	ENSPEMG00000011672	Prpf3	100	72.973	Peromyscus_maniculatus_bairdii
ENSDARG00000086425	prpf3	62	70.938	ENSPMAG00000005588	prpf3	99	69.690	Petromyzon_marinus
ENSDARG00000086425	prpf3	99	72.546	ENSPCIG00000008795	PRPF3	100	73.229	Phascolarctos_cinereus
ENSDARG00000086425	prpf3	100	79.830	ENSPFOG00000013638	prpf3	100	79.830	Poecilia_formosa
ENSDARG00000086425	prpf3	100	79.659	ENSPLAG00000018103	prpf3	100	79.659	Poecilia_latipinna
ENSDARG00000086425	prpf3	100	79.232	ENSPMEG00000023546	prpf3	100	79.232	Poecilia_mexicana
ENSDARG00000086425	prpf3	100	79.943	ENSPREG00000017216	prpf3	100	79.943	Poecilia_reticulata
ENSDARG00000086425	prpf3	97	61.594	ENSPPYG00000018646	-	99	64.045	Pongo_abelii
ENSDARG00000086425	prpf3	100	66.667	ENSPPYG00000000900	PRPF3	99	72.214	Pongo_abelii
ENSDARG00000086425	prpf3	87	73.486	ENSPCAG00000014908	PRPF3	87	73.813	Procavia_capensis
ENSDARG00000086425	prpf3	99	72.546	ENSPCOG00000013828	PRPF3	100	72.831	Propithecus_coquereli
ENSDARG00000086425	prpf3	99	72.119	ENSPVAG00000013472	PRPF3	100	72.404	Pteropus_vampyrus
ENSDARG00000086425	prpf3	100	81.402	ENSPNYG00000004279	prpf3	100	81.402	Pundamilia_nyererei
ENSDARG00000086425	prpf3	100	88.571	ENSPNAG00000001799	prpf3	100	84.746	Pygocentrus_nattereri
ENSDARG00000086425	prpf3	99	72.546	ENSRNOG00000025629	Prpf3	100	72.831	Rattus_norvegicus
ENSDARG00000086425	prpf3	100	66.667	ENSRBIG00000028854	PRPF3	98	72.340	Rhinopithecus_bieti
ENSDARG00000086425	prpf3	99	72.688	ENSRROG00000027464	PRPF3	100	72.973	Rhinopithecus_roxellana
ENSDARG00000086425	prpf3	100	66.667	ENSSBOG00000033104	PRPF3	100	66.714	Saimiri_boliviensis_boliviensis
ENSDARG00000086425	prpf3	99	72.159	ENSSHAG00000009548	PRPF3	100	72.843	Sarcophilus_harrisii
ENSDARG00000086425	prpf3	100	81.268	ENSSFOG00015022014	prpf3	100	81.268	Scleropages_formosus
ENSDARG00000086425	prpf3	100	79.577	ENSSMAG00000015739	prpf3	100	79.577	Scophthalmus_maximus
ENSDARG00000086425	prpf3	100	79.286	ENSSDUG00000006840	prpf3	100	77.952	Seriola_dumerili
ENSDARG00000086425	prpf3	100	80.450	ENSSLDG00000015423	prpf3	100	80.450	Seriola_lalandi_dorsalis
ENSDARG00000086425	prpf3	99	72.688	ENSSARG00000011064	PRPF3	100	72.973	Sorex_araneus
ENSDARG00000086425	prpf3	99	72.370	ENSSPUG00000000809	PRPF3	100	72.931	Sphenodon_punctatus
ENSDARG00000086425	prpf3	100	80.939	ENSSPAG00000018721	prpf3	100	81.081	Stegastes_partitus
ENSDARG00000086425	prpf3	99	72.688	ENSSSCG00000030119	PRPF3	100	74.291	Sus_scrofa
ENSDARG00000086425	prpf3	99	63.352	ENSTGUG00000004552	PRPF3	100	63.559	Taeniopygia_guttata
ENSDARG00000086425	prpf3	100	78.857	ENSTRUG00000014923	prpf3	100	78.857	Takifugu_rubripes
ENSDARG00000086425	prpf3	99	78.822	ENSTNIG00000008058	prpf3	100	78.822	Tetraodon_nigroviridis
ENSDARG00000086425	prpf3	80	71.882	ENSTBEG00000014072	PRPF3	87	73.243	Tupaia_belangeri
ENSDARG00000086425	prpf3	100	66.667	ENSTTRG00000010616	PRPF3	100	67.568	Tursiops_truncatus
ENSDARG00000086425	prpf3	80	74.291	ENSUAMG00000009345	PRPF3	100	74.291	Ursus_americanus
ENSDARG00000086425	prpf3	99	72.688	ENSUMAG00000003720	PRPF3	100	72.973	Ursus_maritimus
ENSDARG00000086425	prpf3	100	66.667	ENSVPAG00000005425	PRPF3	89	77.778	Vicugna_pacos
ENSDARG00000086425	prpf3	99	72.688	ENSVVUG00000007933	PRPF3	100	72.973	Vulpes_vulpes
ENSDARG00000086425	prpf3	99	71.994	ENSXETG00000018654	prpf3	100	72.766	Xenopus_tropicalis
ENSDARG00000086425	prpf3	100	79.232	ENSXMAG00000016347	prpf3	100	79.232	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	IEA	Component
GO:0060041	retina development in camera-type eye	18552388.	IMP	Process