EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000086896 (Gene tree)
Gene ID
493616
Gene Symbol
fubp3
Alias
zgc:101598
Full Name
far upstream element (FUSE) binding protein 3
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
55474 bases
Position
chr5:872299-927772
Accession
ZDB-GENE-041121-12
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000111831KH_1PF00013.291.9e-6714
ENSDARP00000111831KH_1PF00013.291.9e-6724
ENSDARP00000111831KH_1PF00013.291.9e-6734
ENSDARP00000111831KH_1PF00013.291.9e-6744
ENSDARP00000111831KH_2PF07650.179.6e-2211
ENSDARP00000111831DUF1897PF09005.102.9e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000130042-1713-ENSDARP00000111831571 (aa)-E7EYA8
Gene Model
Click here to download ENSDARG00000086896's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000086896's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000086896fubp37355.234ENSDARG00000029248fubp19550.562
ENSDARG00000086896fubp35532.000ENSDARG00000057141zgc:1100457230.000
ENSDARG00000086896fubp39643.168ENSDARG00000026489khsrp9351.724
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000086896fubp39864.081ENSG00000107164FUBP39964.755Homo_sapiens
ENSDARG00000086896fubp39271.241ENSAPOG00000018241-9968.838Acanthochromis_polyacanthus
ENSDARG00000086896fubp310072.790ENSAPOG00000016135fubp310072.444Acanthochromis_polyacanthus
ENSDARG00000086896fubp39865.261ENSAMEG00000016193FUBP39865.936Ailuropoda_melanoleuca
ENSDARG00000086896fubp39965.149ENSACIG00000019595fubp39865.674Amphilophus_citrinellus
ENSDARG00000086896fubp38770.179ENSACIG00000005212-8569.980Amphilophus_citrinellus
ENSDARG00000086896fubp39271.241ENSAOCG00000008429-9968.838Amphiprion_ocellaris
ENSDARG00000086896fubp310072.790ENSAOCG00000015110fubp310072.444Amphiprion_ocellaris
ENSDARG00000086896fubp39271.241ENSAPEG00000022868-9968.838Amphiprion_percula
ENSDARG00000086896fubp310072.617ENSAPEG00000015125fubp310072.270Amphiprion_percula
ENSDARG00000086896fubp39972.569ENSATEG00000018030fubp310072.743Anabas_testudineus
ENSDARG00000086896fubp39769.039ENSATEG00000014618-9568.627Anabas_testudineus
ENSDARG00000086896fubp39268.921ENSAPLG00000011238FUBP39369.287Anas_platyrhynchos
ENSDARG00000086896fubp39864.587ENSANAG00000022905FUBP39965.261Aotus_nancymaae
ENSDARG00000086896fubp39270.189ENSACLG00000007655-9768.817Astatotilapia_calliptera
ENSDARG00000086896fubp310072.222ENSACLG00000011819fubp39372.743Astatotilapia_calliptera
ENSDARG00000086896fubp39984.201ENSAMXG00000008318fubp310084.201Astyanax_mexicanus
ENSDARG00000086896fubp39964.983ENSBTAG00000013072FUBP39965.657Bos_taurus
ENSDARG00000086896fubp39864.418ENSCJAG00000020542FUBP39965.093Callithrix_jacchus
ENSDARG00000086896fubp39866.784ENSCAFG00000019942FUBP39966.784Canis_familiaris
ENSDARG00000086896fubp39863.283ENSCAFG00020024002FUBP39964.211Canis_lupus_dingo
ENSDARG00000086896fubp39963.699ENSCHIG00000027228FUBP39764.384Capra_hircus
ENSDARG00000086896fubp38558.949ENSTSYG00000028199FUBP39959.728Carlito_syrichta
ENSDARG00000086896fubp39264.621ENSCAPG00000007144FUBP39865.343Cavia_aperea
ENSDARG00000086896fubp39863.973ENSCPOG00000010315FUBP39964.646Cavia_porcellus
ENSDARG00000086896fubp39864.418ENSCCAG00000036313FUBP39965.093Cebus_capucinus
ENSDARG00000086896fubp39861.448ENSCATG00000015864FUBP39962.121Cercocebus_atys
ENSDARG00000086896fubp39864.478ENSCLAG00000009005FUBP39965.152Chinchilla_lanigera
ENSDARG00000086896fubp39864.081ENSCSAG00000014748FUBP39964.755Chlorocebus_sabaeus
ENSDARG00000086896fubp36379.851ENSCHOG00000010987FUBP36979.851Choloepus_hoffmanni
ENSDARG00000086896fubp39872.968ENSCPBG00000022635FUBP39972.968Chrysemys_picta_bellii
ENSDARG00000086896fubp39864.250ENSCANG00000042975FUBP39964.924Colobus_angolensis_palliatus
ENSDARG00000086896fubp39865.254ENSCGRG00001011076Fubp39965.763Cricetulus_griseus_chok1gshd
ENSDARG00000086896fubp39864.576ENSCGRG00000001872Fubp39965.085Cricetulus_griseus_crigri
ENSDARG00000086896fubp310070.389ENSCSEG00000017815FUBP310070.558Cynoglossus_semilaevis
ENSDARG00000086896fubp39271.482ENSCSEG00000008761-9968.310Cynoglossus_semilaevis
ENSDARG00000086896fubp37576.508ENSCVAG00000006510-10075.988Cyprinodon_variegatus
ENSDARG00000086896fubp39970.681ENSCVAG00000017181FUBP39970.364Cyprinodon_variegatus
ENSDARG00000086896fubp39859.528ENSDNOG00000014533FUBP39962.025Dasypus_novemcinctus
ENSDARG00000086896fubp39854.015ENSETEG00000008842FUBP38853.285Echinops_telfairi
ENSDARG00000086896fubp39866.784ENSEASG00005008416FUBP39967.668Equus_asinus_asinus
ENSDARG00000086896fubp39866.254ENSECAG00000011500FUBP39965.936Equus_caballus
ENSDARG00000086896fubp38264.257ENSEEUG00000000550FUBP38864.032Erinaceus_europaeus
ENSDARG00000086896fubp310075.809ENSELUG00000013808fubp310081.034Esox_lucius
ENSDARG00000086896fubp39576.460ENSELUG00000009949-10073.966Esox_lucius
ENSDARG00000086896fubp39863.744ENSFCAG00000005113FUBP39964.418Felis_catus
ENSDARG00000086896fubp38470.588ENSFALG00000001444FUBP39971.008Ficedula_albicollis
ENSDARG00000086896fubp39265.009ENSFDAG00000013466FUBP39965.746Fukomys_damarensis
ENSDARG00000086896fubp39971.553ENSFHEG00000003957fubp39771.231Fundulus_heteroclitus
ENSDARG00000086896fubp37171.557ENSFHEG00000006558-9168.824Fundulus_heteroclitus
ENSDARG00000086896fubp39865.194ENSGMOG00000017047-9765.548Gadus_morhua
ENSDARG00000086896fubp38765.714ENSGMOG00000002653FUBP38565.714Gadus_morhua
ENSDARG00000086896fubp39870.840ENSGALG00000003941FUBP39970.840Gallus_gallus
ENSDARG00000086896fubp39970.979ENSGAFG00000010840FUBP39970.660Gambusia_affinis
ENSDARG00000086896fubp39371.375ENSGAFG00000019255-9970.621Gambusia_affinis
ENSDARG00000086896fubp39971.701ENSGACG00000016704fubp39972.222Gasterosteus_aculeatus
ENSDARG00000086896fubp39957.639ENSGACG00000000957-9957.639Gasterosteus_aculeatus
ENSDARG00000086896fubp39869.788ENSGAGG00000014090FUBP39970.141Gopherus_agassizii
ENSDARG00000086896fubp39864.250ENSGGOG00000011318FUBP39964.924Gorilla_gorilla
ENSDARG00000086896fubp39168.199ENSHBUG00000022475-8668.199Haplochromis_burtoni
ENSDARG00000086896fubp310072.222ENSHBUG00000022849fubp310072.743Haplochromis_burtoni
ENSDARG00000086896fubp39658.377ENSHGLG00000014728-9759.067Heterocephalus_glaber_female
ENSDARG00000086896fubp39864.755ENSHGLG00000014381-9965.430Heterocephalus_glaber_female
ENSDARG00000086896fubp39970.761ENSHCOG00000003639FUBP310070.588Hippocampus_comes
ENSDARG00000086896fubp39861.538ENSHCOG00000021170-9861.121Hippocampus_comes
ENSDARG00000086896fubp39980.546ENSIPUG00000019400FUBP39980.678Ictalurus_punctatus
ENSDARG00000086896fubp39864.081ENSSTOG00000014105FUBP39965.261Ictidomys_tridecemlineatus
ENSDARG00000086896fubp39265.827ENSJJAG00000009992Fubp39866.547Jaculus_jaculus
ENSDARG00000086896fubp39469.216ENSKMAG00000016886fubp39669.403Kryptolebias_marmoratus
ENSDARG00000086896fubp39671.454ENSKMAG00000021164-9871.275Kryptolebias_marmoratus
ENSDARG00000086896fubp39271.136ENSLBEG00000007845-9968.761Labrus_bergylta
ENSDARG00000086896fubp39964.448ENSLBEG00000017826FUBP39864.870Labrus_bergylta
ENSDARG00000086896fubp39970.121ENSLACG00000017619FUBP310070.121Latimeria_chalumnae
ENSDARG00000086896fubp39979.346ENSLOCG00000005411fubp39979.346Lepisosteus_oculatus
ENSDARG00000086896fubp39865.430ENSLAFG00000011611FUBP39866.727Loxodonta_africana
ENSDARG00000086896fubp39863.912ENSMFAG00000038309FUBP39964.587Macaca_fascicularis
ENSDARG00000086896fubp39863.912ENSMMUG00000008249FUBP39964.587Macaca_mulatta
ENSDARG00000086896fubp39863.912ENSMNEG00000039622FUBP39964.587Macaca_nemestrina
ENSDARG00000086896fubp39264.388ENSMLEG00000037030FUBP39865.108Mandrillus_leucophaeus
ENSDARG00000086896fubp310072.270ENSMAMG00000013259fubp39972.270Mastacembelus_armatus
ENSDARG00000086896fubp39863.251ENSMAMG00000019009-9663.251Mastacembelus_armatus
ENSDARG00000086896fubp39269.811ENSMZEG00005000329-9768.459Maylandia_zebra
ENSDARG00000086896fubp39267.986ENSMGAG00000005342FUBP39868.345Meleagris_gallopavo
ENSDARG00000086896fubp39865.144ENSMAUG00000012513Fubp39965.651Mesocricetus_auratus
ENSDARG00000086896fubp39865.548ENSMICG00000034044-9966.254Microcebus_murinus
ENSDARG00000086896fubp39865.430ENSMICG00000015452-9966.105Microcebus_murinus
ENSDARG00000086896fubp39865.482ENSMOCG00000005635Fubp39965.990Microtus_ochrogaster
ENSDARG00000086896fubp39963.047ENSMMOG00000000105FUBP39963.398Mola_mola
ENSDARG00000086896fubp39968.254ENSMMOG00000020809-9768.078Mola_mola
ENSDARG00000086896fubp39866.498ENSMODG00000012105FUBP39967.003Monodelphis_domestica
ENSDARG00000086896fubp310071.478ENSMALG00000021819FUBP39971.652Monopterus_albus
ENSDARG00000086896fubp39269.737ENSMALG00000002993-9967.430Monopterus_albus
ENSDARG00000086896fubp39864.576MGP_CAROLIEiJ_G0023413Fubp39677.049Mus_caroli
ENSDARG00000086896fubp39864.576ENSMUSG00000026843Fubp39677.049Mus_musculus
ENSDARG00000086896fubp39864.576MGP_PahariEiJ_G0024870Fubp39677.049Mus_pahari
ENSDARG00000086896fubp39864.576MGP_SPRETEiJ_G0024330Fubp39677.049Mus_spretus
ENSDARG00000086896fubp39864.755ENSMPUG00000012692FUBP39965.430Mustela_putorius_furo
ENSDARG00000086896fubp39864.983ENSMLUG00000008743FUBP39865.657Myotis_lucifugus
ENSDARG00000086896fubp39865.424ENSNGAG00000016562Fubp39966.102Nannospalax_galili
ENSDARG00000086896fubp39470.093ENSNBRG00000006751FUBP39470.280Neolamprologus_brichardi
ENSDARG00000086896fubp39763.604ENSNBRG00000024313-9463.423Neolamprologus_brichardi
ENSDARG00000086896fubp38766.352ENSNLEG00000012523FUBP310064.685Nomascus_leucogenys
ENSDARG00000086896fubp39176.582ENSMEUG00000007862FUBP38274.611Notamacropus_eugenii
ENSDARG00000086896fubp39861.214ENSOPRG00000008648FUBP39961.214Ochotona_princeps
ENSDARG00000086896fubp310072.222ENSONIG00000002861fubp310072.743Oreochromis_niloticus
ENSDARG00000086896fubp39665.232ENSONIG00000000666-9665.060Oreochromis_niloticus
ENSDARG00000086896fubp39266.487ENSOANG00000001042FUBP39966.932Ornithorhynchus_anatinus
ENSDARG00000086896fubp37566.352ENSOCUG00000006183FUBP39466.352Oryctolagus_cuniculus
ENSDARG00000086896fubp310070.711ENSORLG00000007103fubp310070.191Oryzias_latipes
ENSDARG00000086896fubp39867.663ENSORLG00000017565-9968.366Oryzias_latipes
ENSDARG00000086896fubp310070.884ENSORLG00020019624fubp310070.364Oryzias_latipes_hni
ENSDARG00000086896fubp39871.529ENSORLG00020013143-9971.529Oryzias_latipes_hni
ENSDARG00000086896fubp310070.884ENSORLG00015007684fubp310070.364Oryzias_latipes_hsok
ENSDARG00000086896fubp39871.529ENSORLG00015003412-9971.529Oryzias_latipes_hsok
ENSDARG00000086896fubp310071.231ENSOMEG00000004190fubp310070.711Oryzias_melastigma
ENSDARG00000086896fubp39868.366ENSOMEG00000007725-9968.366Oryzias_melastigma
ENSDARG00000086896fubp39864.755ENSOGAG00000007555FUBP39965.430Otolemur_garnettii
ENSDARG00000086896fubp39561.207ENSOARG00000007540FUBP39860.690Ovis_aries
ENSDARG00000086896fubp39864.081ENSPPAG00000011103FUBP39964.755Pan_paniscus
ENSDARG00000086896fubp39264.209ENSPPRG00000023251FUBP39864.928Panthera_pardus
ENSDARG00000086896fubp38666.191ENSPTIG00000019979FUBP39866.191Panthera_tigris_altaica
ENSDARG00000086896fubp38959.615ENSPTRG00000044650-9965.010Pan_troglodytes
ENSDARG00000086896fubp39864.081ENSPTRG00000021474FUBP39964.755Pan_troglodytes
ENSDARG00000086896fubp39864.081ENSPANG00000025968FUBP39964.755Papio_anubis
ENSDARG00000086896fubp310077.990ENSPKIG00000007267-10077.990Paramormyrops_kingsleyae
ENSDARG00000086896fubp310082.292ENSPKIG00000004367fubp310082.292Paramormyrops_kingsleyae
ENSDARG00000086896fubp39268.668ENSPSIG00000006734FUBP39571.456Pelodiscus_sinensis
ENSDARG00000086896fubp37866.774ENSPMGG00000016496-7766.452Periophthalmus_magnuspinnatus
ENSDARG00000086896fubp39965.849ENSPMGG00000008874fubp39966.200Periophthalmus_magnuspinnatus
ENSDARG00000086896fubp39865.085ENSPEMG00000019195Fubp39965.593Peromyscus_maniculatus_bairdii
ENSDARG00000086896fubp39869.841ENSPCIG00000024114FUBP39970.370Phascolarctos_cinereus
ENSDARG00000086896fubp39868.905ENSPFOG00000008400-9770.577Poecilia_formosa
ENSDARG00000086896fubp39971.030ENSPFOG00000019842FUBP39970.711Poecilia_formosa
ENSDARG00000086896fubp39467.724ENSPLAG00000016612fubp39667.164Poecilia_latipinna
ENSDARG00000086896fubp39871.327ENSPLAG00000008443-9970.619Poecilia_latipinna
ENSDARG00000086896fubp39272.556ENSPMEG00000014351-10071.805Poecilia_mexicana
ENSDARG00000086896fubp39971.030ENSPMEG00000016672FUBP39970.711Poecilia_mexicana
ENSDARG00000086896fubp310071.057ENSPREG00000015101FUBP39870.537Poecilia_reticulata
ENSDARG00000086896fubp38872.925ENSPREG00000003168-9672.727Poecilia_reticulata
ENSDARG00000086896fubp39864.081ENSPPYG00000019693FUBP39964.755Pongo_abelii
ENSDARG00000086896fubp38468.765ENSPCAG00000001717FUBP38668.765Procavia_capensis
ENSDARG00000086896fubp39865.767ENSPCOG00000022783FUBP39966.442Propithecus_coquereli
ENSDARG00000086896fubp39865.599ENSPVAG00000001510FUBP39965.599Pteropus_vampyrus
ENSDARG00000086896fubp39466.236ENSPNYG00000013607-9966.236Pundamilia_nyererei
ENSDARG00000086896fubp310072.049ENSPNYG00000009567fubp39372.569Pundamilia_nyererei
ENSDARG00000086896fubp39985.243ENSPNAG00000013478fubp310085.243Pygocentrus_nattereri
ENSDARG00000086896fubp39864.237ENSRNOG00000009139Fubp39964.915Rattus_norvegicus
ENSDARG00000086896fubp39864.081ENSRBIG00000042110-9964.755Rhinopithecus_bieti
ENSDARG00000086896fubp39861.551ENSRBIG00000030864-9962.226Rhinopithecus_bieti
ENSDARG00000086896fubp39864.081ENSRROG00000030006-9964.755Rhinopithecus_roxellana
ENSDARG00000086896fubp39861.383ENSRROG00000032640-9962.057Rhinopithecus_roxellana
ENSDARG00000086896fubp39854.749ENSSBOG00000021755FUBP39954.469Saimiri_boliviensis_boliviensis
ENSDARG00000086896fubp38467.197ENSSHAG00000015689FUBP39967.793Sarcophilus_harrisii
ENSDARG00000086896fubp39981.185ENSSFOG00015011098fubp39981.185Scleropages_formosus
ENSDARG00000086896fubp310082.902ENSSFOG00015012455-10082.902Scleropages_formosus
ENSDARG00000086896fubp310073.010ENSSMAG00000003793FUBP310073.010Scophthalmus_maximus
ENSDARG00000086896fubp39271.992ENSSMAG00000017905-9969.542Scophthalmus_maximus
ENSDARG00000086896fubp310073.310ENSSDUG00000023495fubp310073.830Seriola_dumerili
ENSDARG00000086896fubp39972.203ENSSDUG00000005975-9972.359Seriola_dumerili
ENSDARG00000086896fubp310073.310ENSSLDG00000009455FUBP310073.830Seriola_lalandi_dorsalis
ENSDARG00000086896fubp38767.220ENSSLDG00000013592-9067.220Seriola_lalandi_dorsalis
ENSDARG00000086896fubp39869.965ENSSPUG00000013444FUBP39970.318Sphenodon_punctatus
ENSDARG00000086896fubp39271.429ENSSPAG00000022405-9969.014Stegastes_partitus
ENSDARG00000086896fubp310073.310ENSSPAG00000018848fubp310073.830Stegastes_partitus
ENSDARG00000086896fubp39865.144ENSSSCG00000005702FUBP39966.203Sus_scrofa
ENSDARG00000086896fubp39763.841ENSTGUG00000004662FUBP39964.187Taeniopygia_guttata
ENSDARG00000086896fubp39966.960ENSTRUG00000013259-9769.368Takifugu_rubripes
ENSDARG00000086896fubp39967.133ENSTRUG00000018658fubp39567.308Takifugu_rubripes
ENSDARG00000086896fubp39659.425ENSTNIG00000009019fubp39860.465Tetraodon_nigroviridis
ENSDARG00000086896fubp39665.054ENSTNIG00000005858-10064.875Tetraodon_nigroviridis
ENSDARG00000086896fubp39849.578ENSTTRG00000015138FUBP39950.084Tursiops_truncatus
ENSDARG00000086896fubp39865.093ENSUAMG00000009671FUBP39965.767Ursus_americanus
ENSDARG00000086896fubp38463.209ENSUMAG00000018745FUBP39566.094Ursus_maritimus
ENSDARG00000086896fubp35865.000ENSVPAG00000006544-8065.000Vicugna_pacos
ENSDARG00000086896fubp39265.288ENSVVUG00000027641FUBP39964.664Vulpes_vulpes
ENSDARG00000086896fubp39867.368ENSXETG00000001344fubp39969.965Xenopus_tropicalis
ENSDARG00000086896fubp39969.352ENSXCOG00000002806FUBP39868.827Xiphophorus_couchianus
ENSDARG00000086896fubp39560.958ENSXCOG00000011765-9860.773Xiphophorus_couchianus
ENSDARG00000086896fubp310071.231ENSXMAG00000005541FUBP39970.711Xiphophorus_maculatus
ENSDARG00000086896fubp39870.848ENSXMAG00000000237-9870.318Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess

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