EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000087046 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-222k6.2
Alias: fa97c08|im:7054406|wu:fa97c08
Full Name: si:ch211-222k6.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1409 bases
Position: chr22:10054336-10055744
Accession: ZDB-GENE-030131-9038
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000114777	zf-C2H2	PF00096.26	1e-31	1	5
ENSDARP00000114777	zf-C2H2	PF00096.26	1e-31	2	5
ENSDARP00000114777	zf-C2H2	PF00096.26	1e-31	3	5
ENSDARP00000114777	zf-C2H2	PF00096.26	1e-31	4	5
ENSDARP00000114777	zf-C2H2	PF00096.26	1e-31	5	5
ENSDARP00000114777	zf-met	PF12874.7	1.1e-05	1	2
ENSDARP00000114777	zf-met	PF12874.7	1.1e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143686	-	790	XM_005174002	ENSDARP00000114777	249 (aa)	XP_005174059	Q1LXF6

Gene Model

Click here to download ENSDARG00000087046's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087046's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000087046	si:ch211-222k6.2	100	42.775	ENSDARG00000058562	znf991	100	41.765
ENSDARG00000087046	si:ch211-222k6.2	100	46.586	ENSDARG00000113011	zgc:113102	99	46.586

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087046	si:ch211-222k6.2	82	45.902	ENSCVAG00000003417	-	67	45.902	Cyprinodon_variegatus
ENSDARG00000087046	si:ch211-222k6.2	78	44.792	ENSGAFG00000020505	-	65	50.000	Gambusia_affinis
ENSDARG00000087046	si:ch211-222k6.2	77	51.887	ENSXMAG00000021664	-	50	51.887	Xiphophorus_maculatus