EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000087453 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-57f22.2
Alias: -
Full Name: si:ch73-57f22.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5194 bases
Position: chr20:17667-22860
Accession: ZDB-GENE-110411-58
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000125014	zf-C2H2	PF00096.26	5.8e-25	1	4
ENSDARP00000125014	zf-C2H2	PF00096.26	5.8e-25	2	4
ENSDARP00000125014	zf-C2H2	PF00096.26	5.8e-25	3	4
ENSDARP00000125014	zf-C2H2	PF00096.26	5.8e-25	4	4
ENSDARP00000125014	zf-met	PF12874.7	4.9e-07	1	2
ENSDARP00000125014	zf-met	PF12874.7	4.9e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000150100	-	1013	XM_001922971	ENSDARP00000125014	251 (aa)	XP_001923006	F8W5Q3

Gene Model

Click here to download ENSDARG00000087453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087453's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000087453	si:ch73-57f22.2	88	51.923	ENSDARG00000102837	znf1145	100	51.923
ENSDARG00000087453	si:ch73-57f22.2	97	46.269	ENSDARG00000089598	si:cabz01054396.2	100	43.750
ENSDARG00000087453	si:ch73-57f22.2	88	49.533	ENSDARG00000101365	si:cabz01021430.2	99	46.809
ENSDARG00000087453	si:ch73-57f22.2	88	56.716	ENSDARG00000101137	znf999	100	42.593
ENSDARG00000087453	si:ch73-57f22.2	89	52.239	ENSDARG00000074365	zgc:171901	99	48.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087453	si:ch73-57f22.2	66	55.844	ENSCSEG00000011817	-	59	55.844	Cynoglossus_semilaevis
ENSDARG00000087453	si:ch73-57f22.2	53	53.247	ENSPLAG00000001674	-	58	53.247	Poecilia_latipinna
ENSDARG00000087453	si:ch73-57f22.2	53	54.545	ENSPMEG00000013200	-	57	54.545	Poecilia_mexicana
ENSDARG00000087453	si:ch73-57f22.2	53	42.105	ENSSPAG00000017203	-	62	42.105	Stegastes_partitus