EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000087536 (Gene tree)
Gene ID: -
Gene Symbol: znf407
Alias: si:ch73-173g15.1
Full Name: zinc finger protein 407
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 20080 bases
Position: chr16:6727195-6747274
Accession: ZDB-GENE-110411-123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124312	zf-C2H2	PF00096.26	3.6e-25	1	4
ENSDARP00000124312	zf-C2H2	PF00096.26	3.6e-25	2	4
ENSDARP00000124312	zf-C2H2	PF00096.26	3.6e-25	3	4
ENSDARP00000124312	zf-C2H2	PF00096.26	3.6e-25	4	4
ENSDARP00000123996	zf-C2H2	PF00096.26	5.9e-18	1	3
ENSDARP00000123996	zf-C2H2	PF00096.26	5.9e-18	2	3
ENSDARP00000123996	zf-C2H2	PF00096.26	5.9e-18	3	3
ENSDARP00000146361	zf-C2H2	PF00096.26	7e-16	1	2
ENSDARP00000146361	zf-C2H2	PF00096.26	7e-16	2	2
ENSDARP00000124312	zf-met	PF12874.7	0.00019	1	2
ENSDARP00000124312	zf-met	PF12874.7	0.00019	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000180815	-	621	-	ENSDARP00000146361	206 (aa)	-	A0A2R8PYV8
ENSDART00000148479	-	1907	XM_005157848	ENSDARP00000124312	635 (aa)	XP_005157905	F8W3Y7
ENSDART00000148625	-	1560	-	ENSDARP00000123996	443 (aa)	-	F8W447
ENSDART00000149742	-	877	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000087536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087536	znf407	93	87.500	ENSAPOG00000004966	znf407	100	74.808	Acanthochromis_polyacanthus
ENSDARG00000087536	znf407	93	88.542	ENSACIG00000014233	znf407	98	79.152	Amphilophus_citrinellus
ENSDARG00000087536	znf407	93	86.458	ENSAOCG00000010173	znf407	99	73.273	Amphiprion_ocellaris
ENSDARG00000087536	znf407	93	86.458	ENSAPEG00000018919	znf407	99	73.273	Amphiprion_percula
ENSDARG00000087536	znf407	93	87.500	ENSATEG00000024492	znf407	100	73.979	Anabas_testudineus
ENSDARG00000087536	znf407	93	88.021	ENSACLG00000022191	znf407	98	78.799	Astatotilapia_calliptera
ENSDARG00000087536	znf407	100	65.710	ENSSPAG00000016199	znf407	100	68.693	Stegastes_partitus