EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000087779 (Gene tree)
Gene ID: 553068
Gene Symbol: pum3
Alias: cb379|im:7148292|puf-A|sb:cb379|si:ch211-241o7.5
Full Name: pumilio RNA-binding family member 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18929 bases
Position: chr10:15321522-15340450
Accession: ZDB-GENE-030131-9808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129484	CPL	PF08144.11	1.7e-49	1	1
ENSDARP00000153216	CPL	PF08144.11	1.7e-49	1	1
ENSDARP00000108665	CPL	PF08144.11	3.9e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000148119	-	829	-	ENSDARP00000121585	186 (aa)	-	E9QFL4
ENSDART00000133919	-	509	-	-	- (aa)	-	-
ENSDART00000127277	-	2036	-	ENSDARP00000108665	601 (aa)	-	E9QJ83
ENSDART00000189109	-	2356	-	ENSDARP00000153216	629 (aa)	-	X1WGX5
ENSDART00000154037	-	2062	XM_003199315	ENSDARP00000129484	629 (aa)	XP_003199363	X1WGX5

Gene Model

Click here to download ENSDARG00000087779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087779	pum3	98	65.329	ENSG00000080608	PUM3	95	66.132	Homo_sapiens
ENSDARG00000087779	pum3	99	62.287	ENSAPOG00000020252	pum3	99	62.751	Acanthochromis_polyacanthus
ENSDARG00000087779	pum3	94	64.753	ENSAMEG00000012187	PUM3	95	66.667	Ailuropoda_melanoleuca
ENSDARG00000087779	pum3	92	61.446	ENSACIG00000009786	pum3	96	61.446	Amphilophus_citrinellus
ENSDARG00000087779	pum3	99	62.751	ENSAOCG00000004439	pum3	99	63.215	Amphiprion_ocellaris
ENSDARG00000087779	pum3	99	62.751	ENSAPEG00000020523	pum3	99	63.215	Amphiprion_percula
ENSDARG00000087779	pum3	99	63.511	ENSATEG00000005799	pum3	99	64.823	Anabas_testudineus
ENSDARG00000087779	pum3	98	64.331	ENSAPLG00000002920	PUM3	99	64.331	Anas_platyrhynchos
ENSDARG00000087779	pum3	89	63.016	ENSACAG00000003174	PUM3	93	65.171	Anolis_carolinensis
ENSDARG00000087779	pum3	97	66.831	ENSANAG00000024520	PUM3	91	67.652	Aotus_nancymaae
ENSDARG00000087779	pum3	99	60.930	ENSACLG00000001017	pum3	99	60.930	Astatotilapia_calliptera
ENSDARG00000087779	pum3	100	81.429	ENSAMXG00000020911	pum3	100	81.429	Astyanax_mexicanus
ENSDARG00000087779	pum3	98	67.045	ENSBTAG00000013357	PUM3	93	67.045	Bos_taurus
ENSDARG00000087779	pum3	80	31.335	WBGene00014165	puf-12	66	31.335	Caenorhabditis_elegans
ENSDARG00000087779	pum3	99	63.820	ENSCJAG00000010917	PUM3	99	64.596	Callithrix_jacchus
ENSDARG00000087779	pum3	99	64.809	ENSCAFG00000002035	PUM3	94	65.605	Canis_familiaris
ENSDARG00000087779	pum3	99	64.809	ENSCAFG00020026867	PUM3	94	65.605	Canis_lupus_dingo
ENSDARG00000087779	pum3	98	66.883	ENSCHIG00000021559	PUM3	93	66.883	Capra_hircus
ENSDARG00000087779	pum3	98	66.558	ENSTSYG00000007481	PUM3	93	66.558	Carlito_syrichta
ENSDARG00000087779	pum3	99	64.013	ENSCAPG00000010592	-	95	64.809	Cavia_aperea
ENSDARG00000087779	pum3	93	67.221	ENSCPOG00000008552	-	92	67.221	Cavia_porcellus
ENSDARG00000087779	pum3	96	63.297	ENSCCAG00000032650	PUM3	91	67.947	Cebus_capucinus
ENSDARG00000087779	pum3	99	66.242	ENSCATG00000024880	PUM3	94	66.242	Cercocebus_atys
ENSDARG00000087779	pum3	98	66.882	ENSCLAG00000011892	PUM3	93	67.690	Chinchilla_lanigera
ENSDARG00000087779	pum3	99	65.446	ENSCSAG00000008691	PUM3	94	66.242	Chlorocebus_sabaeus
ENSDARG00000087779	pum3	79	57.800	ENSCHOG00000002535	PUM3	74	57.800	Choloepus_hoffmanni
ENSDARG00000087779	pum3	100	61.860	ENSCPBG00000025470	PUM3	95	63.566	Chrysemys_picta_bellii
ENSDARG00000087779	pum3	92	38.188	ENSCING00000024199	-	98	39.964	Ciona_intestinalis
ENSDARG00000087779	pum3	90	39.765	ENSCSAVG00000006072	-	99	41.603	Ciona_savignyi
ENSDARG00000087779	pum3	96	63.919	ENSCANG00000006142	PUM3	92	67.705	Colobus_angolensis_palliatus
ENSDARG00000087779	pum3	98	66.558	ENSCGRG00001016402	Pum3	93	67.370	Cricetulus_griseus_chok1gshd
ENSDARG00000087779	pum3	98	66.558	ENSCGRG00000010207	Pum3	93	67.370	Cricetulus_griseus_crigri
ENSDARG00000087779	pum3	93	61.921	ENSCSEG00000001565	pum3	99	63.167	Cynoglossus_semilaevis
ENSDARG00000087779	pum3	88	54.741	ENSCVAG00000006550	pum3	99	57.394	Cyprinodon_variegatus
ENSDARG00000087779	pum3	99	57.870	ENSDNOG00000008157	PUM3	66	57.870	Dasypus_novemcinctus
ENSDARG00000087779	pum3	83	67.810	ENSETEG00000015331	PUM3	84	68.266	Echinops_telfairi
ENSDARG00000087779	pum3	83	41.698	ENSEBUG00000011586	pum3	78	41.698	Eptatretus_burgeri
ENSDARG00000087779	pum3	99	64.809	ENSEASG00005010350	PUM3	94	66.720	Equus_asinus_asinus
ENSDARG00000087779	pum3	99	64.809	ENSECAG00000017193	PUM3	94	66.720	Equus_caballus
ENSDARG00000087779	pum3	89	56.610	ENSEEUG00000010314	PUM3	94	59.284	Erinaceus_europaeus
ENSDARG00000087779	pum3	99	77.636	ENSELUG00000002215	pum3	97	77.636	Esox_lucius
ENSDARG00000087779	pum3	100	64.055	ENSFALG00000010509	PUM3	99	64.055	Ficedula_albicollis
ENSDARG00000087779	pum3	98	66.074	ENSFDAG00000021027	PUM3	93	66.882	Fukomys_damarensis
ENSDARG00000087779	pum3	91	67.590	ENSFHEG00000015576	pum3	99	67.590	Fundulus_heteroclitus
ENSDARG00000087779	pum3	85	65.421	ENSGMOG00000014217	pum3	99	65.421	Gadus_morhua
ENSDARG00000087779	pum3	97	63.948	ENSGALG00000010178	PUM3	96	64.753	Gallus_gallus
ENSDARG00000087779	pum3	57	65.928	ENSGAFG00000001930	pum3	62	65.928	Gambusia_affinis
ENSDARG00000087779	pum3	85	69.549	ENSGACG00000017878	pum3	97	69.549	Gasterosteus_aculeatus
ENSDARG00000087779	pum3	99	64.331	ENSGAGG00000018983	PUM3	98	64.943	Gopherus_agassizii
ENSDARG00000087779	pum3	98	65.595	ENSGGOG00000006143	PUM3	95	66.399	Gorilla_gorilla
ENSDARG00000087779	pum3	99	56.090	ENSHBUG00000012903	pum3	99	55.732	Haplochromis_burtoni
ENSDARG00000087779	pum3	99	65.615	ENSHGLG00000015868	-	92	67.987	Heterocephalus_glaber_female
ENSDARG00000087779	pum3	99	65.615	ENSHGLG00100018825	PUM3	92	67.987	Heterocephalus_glaber_male
ENSDARG00000087779	pum3	99	61.111	ENSHCOG00000010306	pum3	99	61.469	Hippocampus_comes
ENSDARG00000087779	pum3	100	79.081	ENSIPUG00000024801	pum3	100	79.873	Ictalurus_punctatus
ENSDARG00000087779	pum3	99	65.815	ENSSTOG00000009586	PUM3	94	66.613	Ictidomys_tridecemlineatus
ENSDARG00000087779	pum3	99	65.231	ENSJJAG00000012563	Pum3	95	65.231	Jaculus_jaculus
ENSDARG00000087779	pum3	99	60.031	ENSKMAG00000010277	pum3	99	61.515	Kryptolebias_marmoratus
ENSDARG00000087779	pum3	99	62.290	ENSLBEG00000012213	pum3	99	63.110	Labrus_bergylta
ENSDARG00000087779	pum3	100	62.578	ENSLACG00000008312	PUM3	98	64.501	Latimeria_chalumnae
ENSDARG00000087779	pum3	100	75.238	ENSLOCG00000012529	pum3	99	75.238	Lepisosteus_oculatus
ENSDARG00000087779	pum3	98	64.904	ENSLAFG00000017341	PUM3	95	65.705	Loxodonta_africana
ENSDARG00000087779	pum3	99	65.605	ENSMFAG00000001430	PUM3	94	66.401	Macaca_fascicularis
ENSDARG00000087779	pum3	99	65.605	ENSMMUG00000002362	PUM3	93	66.401	Macaca_mulatta
ENSDARG00000087779	pum3	99	65.605	ENSMNEG00000035288	PUM3	94	66.401	Macaca_nemestrina
ENSDARG00000087779	pum3	96	63.863	ENSMLEG00000034820	PUM3	94	66.561	Mandrillus_leucophaeus
ENSDARG00000087779	pum3	99	60.896	ENSMAMG00000022861	pum3	99	62.326	Mastacembelus_armatus
ENSDARG00000087779	pum3	99	60.964	ENSMZEG00005014205	pum3	96	60.964	Maylandia_zebra
ENSDARG00000087779	pum3	99	57.307	ENSMGAG00000002255	PUM3	98	57.968	Meleagris_gallopavo
ENSDARG00000087779	pum3	99	64.865	ENSMAUG00000009733	Pum3	94	66.773	Mesocricetus_auratus
ENSDARG00000087779	pum3	97	65.902	ENSMICG00000045916	PUM3	80	66.721	Microcebus_murinus
ENSDARG00000087779	pum3	99	63.150	ENSMOCG00000014830	-	99	63.027	Microtus_ochrogaster
ENSDARG00000087779	pum3	99	65.764	ENSMOCG00000019519	-	94	66.561	Microtus_ochrogaster
ENSDARG00000087779	pum3	96	59.416	ENSMMOG00000012184	pum3	99	59.416	Mola_mola
ENSDARG00000087779	pum3	91	65.157	ENSMODG00000015417	PUM3	78	65.157	Monodelphis_domestica
ENSDARG00000087779	pum3	99	62.158	ENSMALG00000022164	pum3	92	63.318	Monopterus_albus
ENSDARG00000087779	pum3	99	64.490	MGP_CAROLIEiJ_G0022845	Pum3	94	65.287	Mus_caroli
ENSDARG00000087779	pum3	99	64.331	ENSMUSG00000041360	Pum3	94	65.127	Mus_musculus
ENSDARG00000087779	pum3	97	62.187	MGP_PahariEiJ_G0014338	Pum3	99	64.062	Mus_pahari
ENSDARG00000087779	pum3	99	64.490	MGP_SPRETEiJ_G0023763	Pum3	94	65.287	Mus_spretus
ENSDARG00000087779	pum3	99	64.912	ENSMPUG00000005125	PUM3	95	64.912	Mustela_putorius_furo
ENSDARG00000087779	pum3	97	63.622	ENSMLUG00000002309	PUM3	94	66.083	Myotis_lucifugus
ENSDARG00000087779	pum3	82	69.171	ENSNGAG00000019468	Pum3	90	66.440	Nannospalax_galili
ENSDARG00000087779	pum3	96	59.736	ENSNBRG00000021370	pum3	94	59.736	Neolamprologus_brichardi
ENSDARG00000087779	pum3	96	63.919	ENSNLEG00000008712	PUM3	94	66.561	Nomascus_leucogenys
ENSDARG00000087779	pum3	76	51.754	ENSMEUG00000013606	-	99	51.200	Notamacropus_eugenii
ENSDARG00000087779	pum3	75	54.566	ENSOPRG00000004225	-	67	57.238	Ochotona_princeps
ENSDARG00000087779	pum3	98	66.236	ENSODEG00000003625	-	93	67.044	Octodon_degus
ENSDARG00000087779	pum3	98	62.440	ENSODEG00000016477	-	93	62.440	Octodon_degus
ENSDARG00000087779	pum3	99	60.555	ENSONIG00000012733	pum3	99	60.555	Oreochromis_niloticus
ENSDARG00000087779	pum3	83	67.878	ENSOANG00000014995	PUM3	99	68.450	Ornithorhynchus_anatinus
ENSDARG00000087779	pum3	99	64.968	ENSOCUG00000026104	-	95	65.764	Oryctolagus_cuniculus
ENSDARG00000087779	pum3	99	65.764	ENSOCUG00000004189	-	94	66.561	Oryctolagus_cuniculus
ENSDARG00000087779	pum3	99	59.202	ENSORLG00000014935	pum3	99	60.769	Oryzias_latipes
ENSDARG00000087779	pum3	99	59.202	ENSORLG00020002841	pum3	99	60.930	Oryzias_latipes_hni
ENSDARG00000087779	pum3	99	60.462	ENSORLG00015015906	pum3	97	63.186	Oryzias_latipes_hsok
ENSDARG00000087779	pum3	97	60.784	ENSOMEG00000009427	pum3	99	59.783	Oryzias_melastigma
ENSDARG00000087779	pum3	93	51.060	ENSOGAG00000033481	-	95	51.060	Otolemur_garnettii
ENSDARG00000087779	pum3	99	65.495	ENSOGAG00000008125	-	93	66.883	Otolemur_garnettii
ENSDARG00000087779	pum3	98	66.558	ENSOARG00000013337	PUM3	93	66.558	Ovis_aries
ENSDARG00000087779	pum3	98	65.329	ENSPPAG00000041337	PUM3	95	66.132	Pan_paniscus
ENSDARG00000087779	pum3	99	64.388	ENSPPRG00000000809	PUM3	94	65.183	Panthera_pardus
ENSDARG00000087779	pum3	99	64.229	ENSPTIG00000021934	PUM3	94	65.024	Panthera_tigris_altaica
ENSDARG00000087779	pum3	98	65.490	ENSPTRG00000020735	PUM3	95	66.292	Pan_troglodytes
ENSDARG00000087779	pum3	99	65.924	ENSPANG00000025118	PUM3	94	66.720	Papio_anubis
ENSDARG00000087779	pum3	100	74.611	ENSPKIG00000022249	pum3	99	74.178	Paramormyrops_kingsleyae
ENSDARG00000087779	pum3	100	63.240	ENSPSIG00000016272	PUM3	99	63.240	Pelodiscus_sinensis
ENSDARG00000087779	pum3	78	68.367	ENSPMGG00000021261	pum3	98	68.367	Periophthalmus_magnuspinnatus
ENSDARG00000087779	pum3	80	81.818	ENSPEMG00000019340	-	80	81.818	Peromyscus_maniculatus_bairdii
ENSDARG00000087779	pum3	91	65.385	ENSPCIG00000030598	PUM3	77	65.385	Phascolarctos_cinereus
ENSDARG00000087779	pum3	99	61.852	ENSPFOG00000001719	pum3	99	61.852	Poecilia_formosa
ENSDARG00000087779	pum3	99	62.305	ENSPLAG00000020010	pum3	99	62.617	Poecilia_latipinna
ENSDARG00000087779	pum3	99	62.150	ENSPMEG00000017451	pum3	99	62.461	Poecilia_mexicana
ENSDARG00000087779	pum3	54	69.588	ENSPREG00000019478	-	69	71.053	Poecilia_reticulata
ENSDARG00000087779	pum3	98	65.916	ENSPPYG00000019255	PUM3	95	66.720	Pongo_abelii
ENSDARG00000087779	pum3	99	57.668	ENSPCAG00000005797	PUM3	90	58.466	Procavia_capensis
ENSDARG00000087779	pum3	98	64.090	ENSPCOG00000027325	PUM3	95	65.862	Propithecus_coquereli
ENSDARG00000087779	pum3	99	64.929	ENSPVAG00000016135	PUM3	90	64.929	Pteropus_vampyrus
ENSDARG00000087779	pum3	99	60.930	ENSPNYG00000016124	pum3	99	60.930	Pundamilia_nyererei
ENSDARG00000087779	pum3	100	78.730	ENSPNAG00000026524	pum3	100	78.730	Pygocentrus_nattereri
ENSDARG00000087779	pum3	97	63.863	ENSRNOG00000012574	Pum3	99	64.642	Rattus_norvegicus
ENSDARG00000087779	pum3	97	63.551	ENSRNOG00000048356	RGD1308750	99	64.330	Rattus_norvegicus
ENSDARG00000087779	pum3	96	63.764	ENSRBIG00000036924	PUM3	92	68.289	Rhinopithecus_bieti
ENSDARG00000087779	pum3	96	63.764	ENSRROG00000041089	PUM3	92	68.289	Rhinopithecus_roxellana
ENSDARG00000087779	pum3	97	66.557	ENSSBOG00000028066	PUM3	92	67.377	Saimiri_boliviensis_boliviensis
ENSDARG00000087779	pum3	96	61.154	ENSSHAG00000003730	PUM3	96	63.826	Sarcophilus_harrisii
ENSDARG00000087779	pum3	100	72.855	ENSSFOG00015018778	pum3	99	72.855	Scleropages_formosus
ENSDARG00000087779	pum3	88	67.928	ENSSMAG00000013236	pum3	99	64.451	Scophthalmus_maximus
ENSDARG00000087779	pum3	99	62.913	ENSSDUG00000001887	pum3	96	64.798	Seriola_dumerili
ENSDARG00000087779	pum3	99	63.678	ENSSLDG00000015766	pum3	99	63.982	Seriola_lalandi_dorsalis
ENSDARG00000087779	pum3	99	60.476	ENSSARG00000000579	PUM3	99	61.270	Sorex_araneus
ENSDARG00000087779	pum3	98	65.260	ENSSPUG00000001707	PUM3	98	64.960	Sphenodon_punctatus
ENSDARG00000087779	pum3	99	62.848	ENSSPAG00000003976	pum3	99	62.906	Stegastes_partitus
ENSDARG00000087779	pum3	98	67.044	ENSSSCG00000005227	PUM3	93	67.044	Sus_scrofa
ENSDARG00000087779	pum3	97	65.135	ENSTGUG00000005339	PUM3	99	65.135	Taeniopygia_guttata
ENSDARG00000087779	pum3	99	62.195	ENSTRUG00000004074	pum3	99	62.195	Takifugu_rubripes
ENSDARG00000087779	pum3	100	65.183	ENSTNIG00000010325	pum3	99	65.183	Tetraodon_nigroviridis
ENSDARG00000087779	pum3	83	52.863	ENSTBEG00000013058	PUM3	86	53.131	Tupaia_belangeri
ENSDARG00000087779	pum3	98	60.390	ENSTTRG00000001062	PUM3	89	60.390	Tursiops_truncatus
ENSDARG00000087779	pum3	99	59.365	ENSUMAG00000018443	PUM3	99	65.913	Ursus_maritimus
ENSDARG00000087779	pum3	98	66.883	ENSVPAG00000010766	PUM3	92	66.883	Vicugna_pacos
ENSDARG00000087779	pum3	99	64.968	ENSVVUG00000006527	PUM3	94	65.764	Vulpes_vulpes
ENSDARG00000087779	pum3	97	54.267	ENSXETG00000011707	pum3	98	53.701	Xenopus_tropicalis
ENSDARG00000087779	pum3	95	59.603	ENSXCOG00000006725	pum3	99	59.603	Xiphophorus_couchianus
ENSDARG00000087779	pum3	99	60.530	ENSXMAG00000002926	pum3	99	60.530	Xiphophorus_maculatus