EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000087869 (Gene tree)
Gene ID: 559333
Gene Symbol: si:ch211-11k18.4
Alias: -
Full Name: si:ch211-11k18.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 10950 bases
Position: chr3:26173069-26184018
Accession: ZDB-GENE-070912-22
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000122128	MMR_HSR1	PF01926.23	2.4e-07	1	1
ENSDARP00000123562	MMR_HSR1	PF01926.23	2.9e-07	1	1
ENSDARP00000145092	MMR_HSR1	PF01926.23	2.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000147517	-	634	-	ENSDARP00000122128	196 (aa)	-	E9QHR5
ENSDART00000191604	-	4400	-	ENSDARP00000145092	450 (aa)	-	E7F0T8
ENSDART00000140731	-	2071	XM_702892	ENSDARP00000123562	450 (aa)	XP_707984	E7F0T8

Gene Model

Click here to download ENSDARG00000087869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSDARG00000068863	si:dkey-98f17.5	100	61.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSAPOG00000010378	si:dkey-98f17.5	100	60.667	Acanthochromis_polyacanthus
ENSDARG00000087869	si:ch211-11k18.4	100	92.857	ENSAPOG00000018833	si:ch211-11k18.4	99	84.633	Acanthochromis_polyacanthus
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSACIG00000017719	si:dkey-98f17.5	100	60.444	Amphilophus_citrinellus
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSACIG00000006696	si:ch211-11k18.4	99	81.111	Amphilophus_citrinellus
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSAOCG00000008661	si:dkey-98f17.5	100	61.111	Amphiprion_ocellaris
ENSDARG00000087869	si:ch211-11k18.4	100	92.347	ENSAOCG00000014284	si:ch211-11k18.4	99	84.222	Amphiprion_ocellaris
ENSDARG00000087869	si:ch211-11k18.4	100	92.347	ENSAPEG00000014910	si:ch211-11k18.4	99	84.000	Amphiprion_percula
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSAPEG00000022447	si:dkey-98f17.5	100	61.111	Amphiprion_percula
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSATEG00000004775	si:ch211-11k18.4	99	82.889	Anabas_testudineus
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSATEG00000007188	si:dkey-98f17.5	100	60.667	Anabas_testudineus
ENSDARG00000087869	si:ch211-11k18.4	97	75.393	ENSACAG00000028632	-	98	66.368	Anolis_carolinensis
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSACLG00000007907	si:ch211-11k18.4	99	83.964	Astatotilapia_calliptera
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSACLG00000001308	si:dkey-98f17.5	100	60.889	Astatotilapia_calliptera
ENSDARG00000087869	si:ch211-11k18.4	100	76.020	ENSAMXG00000001190	si:dkey-98f17.5	100	61.333	Astyanax_mexicanus
ENSDARG00000087869	si:ch211-11k18.4	100	92.857	ENSAMXG00000017817	si:ch211-11k18.4	100	85.556	Astyanax_mexicanus
ENSDARG00000087869	si:ch211-11k18.4	100	67.005	ENSCING00000020807	-	99	60.212	Ciona_intestinalis
ENSDARG00000087869	si:ch211-11k18.4	100	68.528	ENSCSAVG00000009987	-	100	59.333	Ciona_savignyi
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSCSEG00000017512	si:dkey-98f17.5	98	61.321	Cynoglossus_semilaevis
ENSDARG00000087869	si:ch211-11k18.4	100	89.286	ENSCSEG00000017661	si:ch211-11k18.4	99	79.556	Cynoglossus_semilaevis
ENSDARG00000087869	si:ch211-11k18.4	100	88.776	ENSCVAG00000015346	si:ch211-11k18.4	99	83.556	Cyprinodon_variegatus
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSCVAG00000011351	si:dkey-98f17.5	100	61.333	Cyprinodon_variegatus
ENSDARG00000087869	si:ch211-11k18.4	100	68.878	ENSEBUG00000007620	si:dkey-98f17.5	99	56.369	Eptatretus_burgeri
ENSDARG00000087869	si:ch211-11k18.4	100	74.619	ENSELUG00000003365	si:dkey-98f17.5	100	60.532	Esox_lucius
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSFHEG00000019820	si:ch211-11k18.4	99	82.000	Fundulus_heteroclitus
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSFHEG00000012744	si:dkey-98f17.5	100	60.667	Fundulus_heteroclitus
ENSDARG00000087869	si:ch211-11k18.4	100	91.837	ENSGMOG00000003492	si:ch211-11k18.4	100	75.990	Gadus_morhua
ENSDARG00000087869	si:ch211-11k18.4	100	87.755	ENSGAFG00000005677	si:ch211-11k18.4	99	80.444	Gambusia_affinis
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSGAFG00000012362	si:dkey-98f17.5	89	60.667	Gambusia_affinis
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSGACG00000013134	si:ch211-11k18.4	100	83.168	Gasterosteus_aculeatus
ENSDARG00000087869	si:ch211-11k18.4	100	72.959	ENSGACG00000009399	si:dkey-98f17.5	100	74.615	Gasterosteus_aculeatus
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSHBUG00000008331	si:dkey-98f17.5	100	61.111	Haplochromis_burtoni
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSHBUG00000020638	si:ch211-11k18.4	99	84.187	Haplochromis_burtoni
ENSDARG00000087869	si:ch211-11k18.4	98	75.648	ENSHCOG00000016505	si:dkey-98f17.5	98	57.623	Hippocampus_comes
ENSDARG00000087869	si:ch211-11k18.4	100	91.327	ENSHCOG00000014773	si:ch211-11k18.4	100	83.111	Hippocampus_comes
ENSDARG00000087869	si:ch211-11k18.4	100	72.959	ENSIPUG00000019981	si:dkey-98f17.5	100	59.071	Ictalurus_punctatus
ENSDARG00000087869	si:ch211-11k18.4	100	83.673	ENSIPUG00000016694	si:ch211-11k18.4	84	73.037	Ictalurus_punctatus
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSIPUG00000016678	si:ch211-11k18.4	99	79.398	Ictalurus_punctatus
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSKMAG00000009327	si:ch211-11k18.4	99	81.556	Kryptolebias_marmoratus
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSKMAG00000014997	si:dkey-98f17.5	100	59.778	Kryptolebias_marmoratus
ENSDARG00000087869	si:ch211-11k18.4	100	73.469	ENSLBEG00000012756	si:dkey-98f17.5	100	60.000	Labrus_bergylta
ENSDARG00000087869	si:ch211-11k18.4	100	80.711	ENSLACG00000006280	si:ch211-11k18.4	100	73.230	Latimeria_chalumnae
ENSDARG00000087869	si:ch211-11k18.4	100	72.959	ENSLACG00000004899	-	100	63.111	Latimeria_chalumnae
ENSDARG00000087869	si:ch211-11k18.4	97	73.298	ENSLACG00000017433	si:dkey-98f17.5	97	60.948	Latimeria_chalumnae
ENSDARG00000087869	si:ch211-11k18.4	99	75.127	ENSLOCG00000003824	si:dkey-98f17.5	99	59.867	Lepisosteus_oculatus
ENSDARG00000087869	si:ch211-11k18.4	100	91.327	ENSMAMG00000002536	si:ch211-11k18.4	99	84.259	Mastacembelus_armatus
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSMAMG00000014528	si:dkey-98f17.5	100	60.444	Mastacembelus_armatus
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSMZEG00005016572	si:dkey-98f17.5	100	61.111	Maylandia_zebra
ENSDARG00000087869	si:ch211-11k18.4	100	90.306	ENSMZEG00005008941	si:ch211-11k18.4	99	83.742	Maylandia_zebra
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSMMOG00000012485	si:ch211-11k18.4	99	78.619	Mola_mola
ENSDARG00000087869	si:ch211-11k18.4	100	73.469	ENSMALG00000012761	si:dkey-98f17.5	100	61.591	Monopterus_albus
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSMALG00000019735	si:ch211-11k18.4	99	81.556	Monopterus_albus
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSNBRG00000006068	si:dkey-98f17.5	100	61.024	Neolamprologus_brichardi
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSNBRG00000002220	si:ch211-11k18.4	98	84.028	Neolamprologus_brichardi
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSONIG00000013568	si:dkey-98f17.5	100	61.111	Oreochromis_niloticus
ENSDARG00000087869	si:ch211-11k18.4	100	91.327	ENSONIG00000019412	si:ch211-11k18.4	99	84.855	Oreochromis_niloticus
ENSDARG00000087869	si:ch211-11k18.4	80	80.892	ENSORLG00000007958	si:dkey-98f17.5	95	61.800	Oryzias_latipes
ENSDARG00000087869	si:ch211-11k18.4	100	87.245	ENSORLG00000012015	si:ch211-11k18.4	99	79.778	Oryzias_latipes
ENSDARG00000087869	si:ch211-11k18.4	100	86.735	ENSORLG00020012386	si:ch211-11k18.4	99	79.556	Oryzias_latipes_hni
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSORLG00020013350	si:dkey-98f17.5	100	60.222	Oryzias_latipes_hni
ENSDARG00000087869	si:ch211-11k18.4	100	88.776	ENSORLG00015022862	si:ch211-11k18.4	99	80.222	Oryzias_latipes_hsok
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSORLG00015002000	si:dkey-98f17.5	100	60.444	Oryzias_latipes_hsok
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSOMEG00000003154	si:dkey-98f17.5	100	60.321	Oryzias_melastigma
ENSDARG00000087869	si:ch211-11k18.4	100	87.755	ENSOMEG00000018686	si:ch211-11k18.4	99	79.778	Oryzias_melastigma
ENSDARG00000087869	si:ch211-11k18.4	100	92.857	ENSPKIG00000018807	si:ch211-11k18.4	100	82.222	Paramormyrops_kingsleyae
ENSDARG00000087869	si:ch211-11k18.4	100	86.224	ENSPKIG00000023918	-	98	78.444	Paramormyrops_kingsleyae
ENSDARG00000087869	si:ch211-11k18.4	100	73.604	ENSPKIG00000024621	si:dkey-98f17.5	100	60.532	Paramormyrops_kingsleyae
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSPMGG00000019065	si:dkey-98f17.5	100	61.111	Periophthalmus_magnuspinnatus
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSPMGG00000016507	si:ch211-11k18.4	99	81.556	Periophthalmus_magnuspinnatus
ENSDARG00000087869	si:ch211-11k18.4	100	73.096	ENSPFOG00000015142	si:dkey-98f17.5	100	60.486	Poecilia_formosa
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSPFOG00000007976	si:ch211-11k18.4	99	82.222	Poecilia_formosa
ENSDARG00000087869	si:ch211-11k18.4	100	72.959	ENSPLAG00000003709	si:dkey-98f17.5	100	60.667	Poecilia_latipinna
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSPLAG00000019794	si:ch211-11k18.4	99	82.222	Poecilia_latipinna
ENSDARG00000087869	si:ch211-11k18.4	100	73.469	ENSPMEG00000018709	si:dkey-98f17.5	94	60.889	Poecilia_mexicana
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSPMEG00000024198	si:ch211-11k18.4	99	82.176	Poecilia_mexicana
ENSDARG00000087869	si:ch211-11k18.4	100	87.755	ENSPREG00000015319	si:ch211-11k18.4	97	76.941	Poecilia_reticulata
ENSDARG00000087869	si:ch211-11k18.4	100	71.939	ENSPREG00000000708	si:dkey-98f17.5	100	60.909	Poecilia_reticulata
ENSDARG00000087869	si:ch211-11k18.4	100	75.000	ENSPNYG00000017266	si:dkey-98f17.5	100	61.111	Pundamilia_nyererei
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSPNYG00000017099	si:ch211-11k18.4	99	84.187	Pundamilia_nyererei
ENSDARG00000087869	si:ch211-11k18.4	100	92.857	ENSPNAG00000022138	si:ch211-11k18.4	100	86.889	Pygocentrus_nattereri
ENSDARG00000087869	si:ch211-11k18.4	100	73.469	ENSPNAG00000021352	si:dkey-98f17.5	100	60.444	Pygocentrus_nattereri
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSSFOG00015000985	si:ch211-11k18.4	94	79.065	Scleropages_formosus
ENSDARG00000087869	si:ch211-11k18.4	100	72.449	ENSSFOG00015017965	si:dkey-98f17.5	100	58.889	Scleropages_formosus
ENSDARG00000087869	si:ch211-11k18.4	100	87.245	ENSSMAG00000009651	si:ch211-11k18.4	99	82.000	Scophthalmus_maximus
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSSMAG00000011905	si:dkey-98f17.5	100	60.222	Scophthalmus_maximus
ENSDARG00000087869	si:ch211-11k18.4	97	75.393	ENSSDUG00000013457	si:dkey-98f17.5	99	60.225	Seriola_dumerili
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSSDUG00000016411	si:ch211-11k18.4	99	84.889	Seriola_dumerili
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSSLDG00000019145	si:ch211-11k18.4	99	84.667	Seriola_lalandi_dorsalis
ENSDARG00000087869	si:ch211-11k18.4	97	74.869	ENSSLDG00000025395	si:dkey-98f17.5	99	60.000	Seriola_lalandi_dorsalis
ENSDARG00000087869	si:ch211-11k18.4	87	66.497	ENSSPUG00000010096	-	99	66.497	Sphenodon_punctatus
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSSPAG00000018800	si:dkey-98f17.5	100	60.889	Stegastes_partitus
ENSDARG00000087869	si:ch211-11k18.4	100	91.837	ENSSPAG00000010697	si:ch211-11k18.4	99	84.889	Stegastes_partitus
ENSDARG00000087869	si:ch211-11k18.4	100	90.816	ENSTRUG00000020291	si:ch211-11k18.4	99	82.444	Takifugu_rubripes
ENSDARG00000087869	si:ch211-11k18.4	100	74.490	ENSTRUG00000021287	si:dkey-98f17.5	100	60.222	Takifugu_rubripes
ENSDARG00000087869	si:ch211-11k18.4	100	79.899	ENSXETG00000031783	-	100	67.329	Xenopus_tropicalis
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSXCOG00000017002	si:dkey-98f17.5	100	60.659	Xiphophorus_couchianus
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSXCOG00000018094	si:ch211-11k18.4	99	76.264	Xiphophorus_couchianus
ENSDARG00000087869	si:ch211-11k18.4	100	73.980	ENSXMAG00000007688	si:dkey-98f17.5	95	60.889	Xiphophorus_maculatus
ENSDARG00000087869	si:ch211-11k18.4	100	89.796	ENSXMAG00000021235	si:ch211-11k18.4	99	82.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component