EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000087996 (Gene tree)
Gene ID: 796580
Gene Symbol: pabpn1l
Alias: -
Full Name: poly(A) binding protein%2C nuclear 1-like (cytoplasmic)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11081 bases
Position: chr7:55637379-55648459
Accession: ZDB-GENE-080709-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121304	RRM_1	PF00076.22	1.9e-17	1	1
ENSDARP00000118258	RRM_1	PF00076.22	2e-17	1	1
ENSDARP00000113118	RRM_1	PF00076.22	2.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000131923	-	927	XM_021477616	ENSDARP00000118258	163 (aa)	XP_021333291	E7EZ26
ENSDART00000135304	-	648	-	ENSDARP00000113118	192 (aa)	-	E9QGY6
ENSDART00000147792	-	652	-	ENSDARP00000121304	162 (aa)	-	E9QBX4

Gene Model

Click here to download ENSDARG00000087996's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000087996's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000087996	pabpn1l	91	53.889	ENSDARG00000045373	pabpn1	81	54.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000087996	pabpn1l	72	66.387	ENSG00000100836	PABPN1	72	65.289	Homo_sapiens
ENSDARG00000087996	pabpn1l	86	59.184	ENSAPOG00000016425	pabpn1	81	53.476	Acanthochromis_polyacanthus
ENSDARG00000087996	pabpn1l	72	66.387	ENSAMEG00000007048	BCL2L2-PABPN1	75	61.702	Ailuropoda_melanoleuca
ENSDARG00000087996	pabpn1l	72	67.521	ENSACIG00000021744	pabpn1	95	55.689	Amphilophus_citrinellus
ENSDARG00000087996	pabpn1l	72	67.521	ENSAOCG00000015805	pabpn1	81	53.476	Amphiprion_ocellaris
ENSDARG00000087996	pabpn1l	72	67.521	ENSAPEG00000009623	pabpn1	81	53.476	Amphiprion_percula
ENSDARG00000087996	pabpn1l	72	67.521	ENSATEG00000020531	pabpn1	81	53.476	Anabas_testudineus
ENSDARG00000087996	pabpn1l	80	63.359	ENSACAG00000006185	-	56	57.595	Anolis_carolinensis
ENSDARG00000087996	pabpn1l	72	66.387	ENSANAG00000024513	-	51	61.702	Aotus_nancymaae
ENSDARG00000087996	pabpn1l	96	57.862	ENSAMXG00000000452	pabpn1	95	55.952	Astyanax_mexicanus
ENSDARG00000087996	pabpn1l	72	66.387	ENSBTAG00000050594	-	56	61.972	Bos_taurus
ENSDARG00000087996	pabpn1l	72	67.227	ENSBTAG00000053753	-	53	62.411	Bos_taurus
ENSDARG00000087996	pabpn1l	60	59.794	WBGene00003904	pabp-2	64	54.198	Caenorhabditis_elegans
ENSDARG00000087996	pabpn1l	72	63.866	ENSCJAG00000004407	-	61	62.810	Callithrix_jacchus
ENSDARG00000087996	pabpn1l	72	66.387	ENSCJAG00000007960	-	52	61.702	Callithrix_jacchus
ENSDARG00000087996	pabpn1l	72	66.387	ENSTSYG00000033996	BCL2L2-PABPN1	68	65.289	Carlito_syrichta
ENSDARG00000087996	pabpn1l	60	74.490	ENSCAPG00000009461	-	70	74.490	Cavia_aperea
ENSDARG00000087996	pabpn1l	72	66.387	ENSCCAG00000033954	BCL2L2-PABPN1	52	61.702	Cebus_capucinus
ENSDARG00000087996	pabpn1l	72	66.387	ENSCATG00000038536	BCL2L2-PABPN1	52	61.702	Cercocebus_atys
ENSDARG00000087996	pabpn1l	72	56.303	ENSCHOG00000004798	BCL2L2-PABPN1	61	53.191	Choloepus_hoffmanni
ENSDARG00000087996	pabpn1l	80	63.359	ENSCPBG00000026060	-	75	62.406	Chrysemys_picta_bellii
ENSDARG00000087996	pabpn1l	73	58.333	ENSCING00000012468	-	71	52.439	Ciona_intestinalis
ENSDARG00000087996	pabpn1l	73	57.025	ENSCSAVG00000002001	-	95	51.220	Ciona_savignyi
ENSDARG00000087996	pabpn1l	72	66.387	ENSCANG00000009750	BCL2L2-PABPN1	68	65.289	Colobus_angolensis_palliatus
ENSDARG00000087996	pabpn1l	72	59.829	ENSCANG00000030980	-	51	52.778	Colobus_angolensis_palliatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSCGRG00001019696	Pabpn1	68	65.289	Cricetulus_griseus_chok1gshd
ENSDARG00000087996	pabpn1l	72	66.387	ENSCGRG00000011102	Pabpn1	88	61.268	Cricetulus_griseus_crigri
ENSDARG00000087996	pabpn1l	86	59.184	ENSCSEG00000008774	pabpn1	81	53.476	Cynoglossus_semilaevis
ENSDARG00000087996	pabpn1l	72	67.521	ENSCVAG00000003152	pabpn1	63	60.667	Cyprinodon_variegatus
ENSDARG00000087996	pabpn1l	75	59.350	ENSDORG00000023928	-	85	59.350	Dipodomys_ordii
ENSDARG00000087996	pabpn1l	89	54.730	FBgn0005648	Pabp2	75	52.976	Drosophila_melanogaster
ENSDARG00000087996	pabpn1l	96	54.545	ENSEBUG00000002322	pabpn1	80	52.973	Eptatretus_burgeri
ENSDARG00000087996	pabpn1l	72	63.866	ENSEEUG00000012973	-	50	58.219	Erinaceus_europaeus
ENSDARG00000087996	pabpn1l	72	69.231	ENSELUG00000022654	pabpn1	79	54.255	Esox_lucius
ENSDARG00000087996	pabpn1l	72	67.227	ENSFDAG00000018381	BCL2L2-PABPN1	68	66.116	Fukomys_damarensis
ENSDARG00000087996	pabpn1l	86	60.714	ENSFHEG00000007215	pabpn1	81	53.763	Fundulus_heteroclitus
ENSDARG00000087996	pabpn1l	72	68.376	ENSGMOG00000003922	pabpn1	61	56.897	Gadus_morhua
ENSDARG00000087996	pabpn1l	72	67.521	ENSGAFG00000017099	pabpn1	84	52.551	Gambusia_affinis
ENSDARG00000087996	pabpn1l	72	67.521	ENSGACG00000002167	pabpn1	82	51.980	Gasterosteus_aculeatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSGGOG00000022683	-	52	61.702	Gorilla_gorilla
ENSDARG00000087996	pabpn1l	72	56.410	ENSGGOG00000039675	-	50	53.237	Gorilla_gorilla
ENSDARG00000087996	pabpn1l	74	54.098	ENSGGOG00000025919	-	61	61.053	Gorilla_gorilla
ENSDARG00000087996	pabpn1l	72	67.521	ENSHBUG00000019523	pabpn1	81	54.011	Haplochromis_burtoni
ENSDARG00000087996	pabpn1l	72	61.345	ENSHGLG00000018588	-	53	57.447	Heterocephalus_glaber_female
ENSDARG00000087996	pabpn1l	72	54.622	ENSHGLG00000009842	-	68	53.719	Heterocephalus_glaber_female
ENSDARG00000087996	pabpn1l	72	67.227	ENSHGLG00000002927	-	89	62.676	Heterocephalus_glaber_female
ENSDARG00000087996	pabpn1l	72	64.957	ENSHGLG00100018935	-	67	63.866	Heterocephalus_glaber_male
ENSDARG00000087996	pabpn1l	72	67.227	ENSHGLG00100006673	-	89	62.676	Heterocephalus_glaber_male
ENSDARG00000087996	pabpn1l	72	61.345	ENSHGLG00100015565	-	54	57.447	Heterocephalus_glaber_male
ENSDARG00000087996	pabpn1l	79	64.844	ENSHCOG00000004655	pabpn1	75	55.932	Hippocampus_comes
ENSDARG00000087996	pabpn1l	72	69.231	ENSIPUG00000008085	PABPN1	81	54.545	Ictalurus_punctatus
ENSDARG00000087996	pabpn1l	82	63.910	ENSIPUG00000000180	-	83	54.011	Ictalurus_punctatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSSTOG00000029847	BCL2L2-PABPN1	68	65.289	Ictidomys_tridecemlineatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSJJAG00000023507	Gm20521	68	65.289	Jaculus_jaculus
ENSDARG00000087996	pabpn1l	79	64.844	ENSKMAG00000018748	pabpn1	63	60.667	Kryptolebias_marmoratus
ENSDARG00000087996	pabpn1l	86	59.184	ENSLBEG00000027266	pabpn1	81	53.476	Labrus_bergylta
ENSDARG00000087996	pabpn1l	72	66.942	ENSLACG00000000646	pabpn1	78	54.494	Latimeria_chalumnae
ENSDARG00000087996	pabpn1l	86	59.864	ENSLOCG00000000796	pabpn1	62	56.805	Lepisosteus_oculatus
ENSDARG00000087996	pabpn1l	85	66.906	ENSLOCG00000004694	pabpn1l	87	58.378	Lepisosteus_oculatus
ENSDARG00000087996	pabpn1l	60	73.469	ENSLAFG00000031227	-	65	73.469	Loxodonta_africana
ENSDARG00000087996	pabpn1l	72	66.387	ENSMFAG00000032183	BCL2L2-PABPN1	68	65.289	Macaca_fascicularis
ENSDARG00000087996	pabpn1l	70	60.000	ENSMFAG00000031355	-	78	60.000	Macaca_fascicularis
ENSDARG00000087996	pabpn1l	72	66.387	ENSMMUG00000014747	BCL2L2-PABPN1	67	73.469	Macaca_mulatta
ENSDARG00000087996	pabpn1l	74	59.504	ENSMMUG00000048382	-	55	48.810	Macaca_mulatta
ENSDARG00000087996	pabpn1l	72	66.387	ENSMNEG00000045065	BCL2L2-PABPN1	52	61.702	Macaca_nemestrina
ENSDARG00000087996	pabpn1l	86	54.286	ENSMNEG00000035750	-	78	60.000	Macaca_nemestrina
ENSDARG00000087996	pabpn1l	72	66.387	ENSMLEG00000043862	BCL2L2-PABPN1	68	65.289	Mandrillus_leucophaeus
ENSDARG00000087996	pabpn1l	73	61.017	ENSMLEG00000034623	-	67	69.892	Mandrillus_leucophaeus
ENSDARG00000087996	pabpn1l	86	59.184	ENSMAMG00000007979	pabpn1	63	54.645	Mastacembelus_armatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSMICG00000010002	BCL2L2-PABPN1	52	61.702	Microcebus_murinus
ENSDARG00000087996	pabpn1l	72	66.387	ENSMOCG00000018557	Gm20521	87	61.268	Microtus_ochrogaster
ENSDARG00000087996	pabpn1l	87	54.335	ENSMMOG00000005405	pabpn1	81	53.476	Mola_mola
ENSDARG00000087996	pabpn1l	86	59.184	ENSMALG00000019612	pabpn1	63	54.645	Monopterus_albus
ENSDARG00000087996	pabpn1l	72	66.387	MGP_CAROLIEiJ_G0019277	Pabpn1	87	61.268	Mus_caroli
ENSDARG00000087996	pabpn1l	72	66.387	ENSMUSG00000022194	Pabpn1	87	61.268	Mus_musculus
ENSDARG00000087996	pabpn1l	72	66.387	MGP_PahariEiJ_G0030295	Pabpn1	100	69.048	Mus_pahari
ENSDARG00000087996	pabpn1l	72	66.387	MGP_SPRETEiJ_G0020166	Pabpn1	87	61.268	Mus_spretus
ENSDARG00000087996	pabpn1l	72	66.387	ENSMPUG00000006775	-	72	65.289	Mustela_putorius_furo
ENSDARG00000087996	pabpn1l	86	60.563	ENSMLUG00000028677	-	60	56.287	Myotis_lucifugus
ENSDARG00000087996	pabpn1l	73	65.289	ENSMLUG00000003800	-	75	61.702	Myotis_lucifugus
ENSDARG00000087996	pabpn1l	72	67.521	ENSNBRG00000023955	pabpn1	95	55.689	Neolamprologus_brichardi
ENSDARG00000087996	pabpn1l	70	58.065	ENSNLEG00000030598	-	60	54.167	Nomascus_leucogenys
ENSDARG00000087996	pabpn1l	72	66.387	ENSNLEG00000015007	-	52	60.274	Nomascus_leucogenys
ENSDARG00000087996	pabpn1l	59	54.737	ENSNLEG00000035292	-	63	54.737	Nomascus_leucogenys
ENSDARG00000087996	pabpn1l	72	62.393	ENSODEG00000003739	-	51	56.944	Octodon_degus
ENSDARG00000087996	pabpn1l	73	59.504	ENSODEG00000011555	-	65	59.504	Octodon_degus
ENSDARG00000087996	pabpn1l	60	74.490	ENSOANG00000009218	-	67	74.490	Ornithorhynchus_anatinus
ENSDARG00000087996	pabpn1l	72	67.227	ENSOCUG00000016174	PABPN1	53	60.959	Oryctolagus_cuniculus
ENSDARG00000087996	pabpn1l	86	59.184	ENSORLG00000027900	pabpn1	72	56.213	Oryzias_latipes
ENSDARG00000087996	pabpn1l	72	67.521	ENSORLG00020004681	pabpn1	63	54.645	Oryzias_latipes_hni
ENSDARG00000087996	pabpn1l	72	67.521	ENSORLG00015000018	pabpn1	81	53.476	Oryzias_latipes_hsok
ENSDARG00000087996	pabpn1l	86	59.184	ENSOMEG00000016618	pabpn1	63	56.213	Oryzias_melastigma
ENSDARG00000087996	pabpn1l	72	66.387	ENSPPAG00000028984	BCL2L2-PABPN1	72	65.289	Pan_paniscus
ENSDARG00000087996	pabpn1l	72	57.265	ENSPPAG00000039421	-	65	56.303	Pan_paniscus
ENSDARG00000087996	pabpn1l	72	66.387	ENSPTIG00000001063	BCL2L2-PABPN1	68	65.289	Panthera_tigris_altaica
ENSDARG00000087996	pabpn1l	72	56.410	ENSPTRG00000047273	-	50	53.237	Pan_troglodytes
ENSDARG00000087996	pabpn1l	72	66.387	ENSPTRG00000006167	BCL2L2	52	61.702	Pan_troglodytes
ENSDARG00000087996	pabpn1l	72	66.387	ENSPANG00000021100	BCL2L2-PABPN1	52	61.702	Papio_anubis
ENSDARG00000087996	pabpn1l	73	60.169	ENSPANG00000023326	-	65	68.817	Papio_anubis
ENSDARG00000087996	pabpn1l	80	64.341	ENSPKIG00000008144	-	63	55.738	Paramormyrops_kingsleyae
ENSDARG00000087996	pabpn1l	72	68.376	ENSPKIG00000018052	pabpn1	81	54.255	Paramormyrops_kingsleyae
ENSDARG00000087996	pabpn1l	85	71.942	ENSPKIG00000008340	pabpn1l	86	64.972	Paramormyrops_kingsleyae
ENSDARG00000087996	pabpn1l	68	62.727	ENSPSIG00000011959	-	80	62.727	Pelodiscus_sinensis
ENSDARG00000087996	pabpn1l	86	59.864	ENSPMGG00000022027	pabpn1	62	56.805	Periophthalmus_magnuspinnatus
ENSDARG00000087996	pabpn1l	72	66.387	ENSPEMG00000008332	Gm20521	87	61.538	Peromyscus_maniculatus_bairdii
ENSDARG00000087996	pabpn1l	73	66.949	ENSPMAG00000006212	pabpn1	71	57.225	Petromyzon_marinus
ENSDARG00000087996	pabpn1l	72	67.521	ENSPFOG00000010351	pabpn1	80	52.910	Poecilia_formosa
ENSDARG00000087996	pabpn1l	72	67.521	ENSPLAG00000022696	pabpn1	61	57.143	Poecilia_latipinna
ENSDARG00000087996	pabpn1l	72	67.521	ENSPMEG00000020856	pabpn1	81	52.910	Poecilia_mexicana
ENSDARG00000087996	pabpn1l	72	67.521	ENSPREG00000011278	pabpn1	81	52.910	Poecilia_reticulata
ENSDARG00000087996	pabpn1l	72	66.387	ENSPPYG00000005663	PABPN1	52	60.274	Pongo_abelii
ENSDARG00000087996	pabpn1l	72	66.387	ENSPCOG00000028047	BCL2L2-PABPN1	52	61.702	Propithecus_coquereli
ENSDARG00000087996	pabpn1l	96	53.801	ENSPVAG00000005270	PABPN1	64	51.515	Pteropus_vampyrus
ENSDARG00000087996	pabpn1l	72	67.521	ENSPNYG00000013182	pabpn1	81	54.011	Pundamilia_nyererei
ENSDARG00000087996	pabpn1l	96	66.038	ENSPNAG00000021666	pabpn1l	87	69.492	Pygocentrus_nattereri
ENSDARG00000087996	pabpn1l	91	53.333	ENSPNAG00000023526	pabpn1	81	54.011	Pygocentrus_nattereri
ENSDARG00000087996	pabpn1l	60	65.306	ENSRBIG00000042811	-	60	54.167	Rhinopithecus_bieti
ENSDARG00000087996	pabpn1l	72	60.684	ENSRBIG00000039547	-	52	53.472	Rhinopithecus_bieti
ENSDARG00000087996	pabpn1l	72	60.684	ENSRROG00000040409	-	52	53.472	Rhinopithecus_roxellana
ENSDARG00000087996	pabpn1l	72	66.387	ENSRROG00000045535	BCL2L2-PABPN1	68	65.289	Rhinopithecus_roxellana
ENSDARG00000087996	pabpn1l	72	66.387	ENSSBOG00000026930	BCL2L2-PABPN1	72	65.289	Saimiri_boliviensis_boliviensis
ENSDARG00000087996	pabpn1l	77	49.686	ENSSHAG00000007707	-	67	49.686	Sarcophilus_harrisii
ENSDARG00000087996	pabpn1l	72	65.546	ENSSHAG00000014841	-	66	61.538	Sarcophilus_harrisii
ENSDARG00000087996	pabpn1l	96	68.987	ENSSFOG00015015833	pabpn1l	82	66.667	Scleropages_formosus
ENSDARG00000087996	pabpn1l	86	60.544	ENSSFOG00015012565	pabpn1	84	54.545	Scleropages_formosus
ENSDARG00000087996	pabpn1l	79	66.406	ENSSFOG00015014718	pabpn1	81	55.615	Scleropages_formosus
ENSDARG00000087996	pabpn1l	86	59.184	ENSSMAG00000020157	pabpn1	81	53.476	Scophthalmus_maximus
ENSDARG00000087996	pabpn1l	86	59.184	ENSSDUG00000020582	pabpn1	63	54.645	Seriola_dumerili
ENSDARG00000087996	pabpn1l	72	67.521	ENSSLDG00000007118	pabpn1	81	53.476	Seriola_lalandi_dorsalis
ENSDARG00000087996	pabpn1l	80	64.122	ENSSPUG00000018308	-	75	63.158	Sphenodon_punctatus
ENSDARG00000087996	pabpn1l	93	58.442	ENSSPAG00000021658	pabpn1	81	53.723	Stegastes_partitus
ENSDARG00000087996	pabpn1l	59	45.361	ENSSSCG00000038472	-	68	45.361	Sus_scrofa
ENSDARG00000087996	pabpn1l	58	65.957	ENSSSCG00000034805	-	57	50.370	Sus_scrofa
ENSDARG00000087996	pabpn1l	86	59.184	ENSTRUG00000023664	pabpn1	81	53.476	Takifugu_rubripes
ENSDARG00000087996	pabpn1l	86	59.184	ENSTNIG00000005369	pabpn1	79	56.213	Tetraodon_nigroviridis
ENSDARG00000087996	pabpn1l	72	66.387	ENSVVUG00000019912	BCL2L2-PABPN1	62	57.595	Vulpes_vulpes
ENSDARG00000087996	pabpn1l	60	73.469	ENSXCOG00000005158	pabpn1	87	58.784	Xiphophorus_couchianus
ENSDARG00000087996	pabpn1l	72	67.521	ENSXMAG00000006196	pabpn1	84	52.551	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:1904247	positive regulation of polynucleotide adenylyltransferase activity	-	IEA	Process