EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000088367 (Gene tree)
Gene ID: 796738
Gene Symbol: si:cabz01069013.3
Alias: si:cabz01069013
Full Name: si:cabz01069013.3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6981 bases
Position: chr4:74002176-74009156
Accession: ZDB-GENE-161017-47
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	1	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	2	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	3	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	4	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	5	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	6	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	7	8
ENSDARP00000138506	zf-C2H2	PF00096.26	5.4e-50	8	8
ENSDARP00000138506	zf-met	PF12874.7	1.9e-12	1	3
ENSDARP00000138506	zf-met	PF12874.7	1.9e-12	2	3
ENSDARP00000138506	zf-met	PF12874.7	1.9e-12	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163662	-	1230	-	ENSDARP00000138506	326 (aa)	-	A0A0G2L199

Gene Model

Click here to download ENSDARG00000088367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000088367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000088367	si:cabz01069013.3	99	45.370	ENSDARG00000105692	CABZ01069022.1	99	50.543
ENSDARG00000088367	si:cabz01069013.3	93	57.055	ENSDARG00000091393	si:ch211-161m3.6	92	57.055
ENSDARG00000088367	si:cabz01069013.3	96	47.826	ENSDARG00000074298	znf1015	90	47.826

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000088367	si:cabz01069013.3	90	40.217	ENSAPOG00000018586	-	75	40.217	Acanthochromis_polyacanthus
ENSDARG00000088367	si:cabz01069013.3	83	45.532	ENSAPOG00000005187	-	50	44.715	Acanthochromis_polyacanthus
ENSDARG00000088367	si:cabz01069013.3	99	44.713	ENSACIG00000010647	-	97	52.632	Amphilophus_citrinellus
ENSDARG00000088367	si:cabz01069013.3	91	44.091	ENSACIG00000023794	-	76	41.870	Amphilophus_citrinellus
ENSDARG00000088367	si:cabz01069013.3	96	48.538	ENSAOCG00000015369	-	89	49.020	Amphiprion_ocellaris
ENSDARG00000088367	si:cabz01069013.3	92	42.771	ENSAOCG00000013951	-	56	42.771	Amphiprion_ocellaris
ENSDARG00000088367	si:cabz01069013.3	99	45.318	ENSAPEG00000008020	-	91	46.471	Amphiprion_percula
ENSDARG00000088367	si:cabz01069013.3	95	42.771	ENSAPEG00000012229	-	56	42.771	Amphiprion_percula
ENSDARG00000088367	si:cabz01069013.3	95	40.217	ENSAPEG00000018471	-	75	40.217	Amphiprion_percula
ENSDARG00000088367	si:cabz01069013.3	76	42.915	ENSATEG00000007325	-	97	39.274	Anabas_testudineus
ENSDARG00000088367	si:cabz01069013.3	94	46.626	ENSATEG00000005519	-	97	42.714	Anabas_testudineus
ENSDARG00000088367	si:cabz01069013.3	85	36.076	ENSACLG00000006697	-	68	36.076	Astatotilapia_calliptera
ENSDARG00000088367	si:cabz01069013.3	90	37.884	ENSACLG00000006702	-	77	37.884	Astatotilapia_calliptera
ENSDARG00000088367	si:cabz01069013.3	88	45.833	ENSCSEG00000019029	-	89	45.876	Cynoglossus_semilaevis
ENSDARG00000088367	si:cabz01069013.3	93	43.558	ENSCSEG00000005974	-	90	39.739	Cynoglossus_semilaevis
ENSDARG00000088367	si:cabz01069013.3	87	41.319	ENSCVAG00000004958	-	88	41.319	Cyprinodon_variegatus
ENSDARG00000088367	si:cabz01069013.3	94	46.122	ENSFHEG00000020082	-	74	54.217	Fundulus_heteroclitus
ENSDARG00000088367	si:cabz01069013.3	87	37.594	ENSFHEG00000016830	-	61	37.594	Fundulus_heteroclitus
ENSDARG00000088367	si:cabz01069013.3	90	34.472	ENSGAFG00000012945	-	52	36.042	Gambusia_affinis
ENSDARG00000088367	si:cabz01069013.3	96	45.487	ENSHBUG00000004718	-	95	44.674	Haplochromis_burtoni
ENSDARG00000088367	si:cabz01069013.3	90	38.644	ENSHBUG00000015393	-	77	36.842	Haplochromis_burtoni
ENSDARG00000088367	si:cabz01069013.3	94	46.899	ENSKMAG00000003766	-	96	48.837	Kryptolebias_marmoratus
ENSDARG00000088367	si:cabz01069013.3	94	37.912	ENSKMAG00000001192	-	81	37.912	Kryptolebias_marmoratus
ENSDARG00000088367	si:cabz01069013.3	75	43.243	ENSKMAG00000000549	-	54	43.243	Kryptolebias_marmoratus
ENSDARG00000088367	si:cabz01069013.3	89	35.862	ENSKMAG00000001186	-	57	35.862	Kryptolebias_marmoratus
ENSDARG00000088367	si:cabz01069013.3	94	38.621	ENSMAMG00000022206	-	76	38.621	Mastacembelus_armatus
ENSDARG00000088367	si:cabz01069013.3	96	43.173	ENSMZEG00005021413	-	87	44.253	Maylandia_zebra
ENSDARG00000088367	si:cabz01069013.3	92	54.167	ENSMMOG00000017580	-	94	45.490	Mola_mola
ENSDARG00000088367	si:cabz01069013.3	89	39.655	ENSMMOG00000020970	-	78	39.655	Mola_mola
ENSDARG00000088367	si:cabz01069013.3	96	44.390	ENSMMOG00000017586	-	95	44.390	Mola_mola
ENSDARG00000088367	si:cabz01069013.3	87	43.860	ENSNBRG00000021355	-	89	44.177	Neolamprologus_brichardi
ENSDARG00000088367	si:cabz01069013.3	98	36.218	ENSNBRG00000021237	-	94	37.729	Neolamprologus_brichardi
ENSDARG00000088367	si:cabz01069013.3	96	42.366	ENSNBRG00000016577	si:dkey-182i3.9	86	42.262	Neolamprologus_brichardi
ENSDARG00000088367	si:cabz01069013.3	87	54.545	ENSORLG00000028091	-	93	51.515	Oryzias_latipes
ENSDARG00000088367	si:cabz01069013.3	87	50.694	ENSORLG00020009965	-	86	50.694	Oryzias_latipes_hni
ENSDARG00000088367	si:cabz01069013.3	96	44.322	ENSORLG00020018069	-	96	43.111	Oryzias_latipes_hni
ENSDARG00000088367	si:cabz01069013.3	87	53.774	ENSORLG00020010950	-	98	53.774	Oryzias_latipes_hni
ENSDARG00000088367	si:cabz01069013.3	89	42.246	ENSOMEG00000023293	-	73	42.246	Oryzias_melastigma
ENSDARG00000088367	si:cabz01069013.3	87	38.636	ENSOMEG00000010068	-	60	38.636	Oryzias_melastigma
ENSDARG00000088367	si:cabz01069013.3	96	36.082	ENSPMGG00000008802	-	92	36.082	Periophthalmus_magnuspinnatus
ENSDARG00000088367	si:cabz01069013.3	89	35.312	ENSPFOG00000022933	-	56	36.042	Poecilia_formosa
ENSDARG00000088367	si:cabz01069013.3	93	42.049	ENSPFOG00000010018	-	71	40.659	Poecilia_formosa
ENSDARG00000088367	si:cabz01069013.3	99	49.291	ENSPLAG00000019775	-	99	51.230	Poecilia_latipinna
ENSDARG00000088367	si:cabz01069013.3	95	42.254	ENSPLAG00000016662	-	78	46.457	Poecilia_latipinna
ENSDARG00000088367	si:cabz01069013.3	89	35.000	ENSPLAG00000006247	-	56	36.042	Poecilia_latipinna
ENSDARG00000088367	si:cabz01069013.3	89	35.312	ENSPMEG00000014986	-	56	36.042	Poecilia_mexicana
ENSDARG00000088367	si:cabz01069013.3	95	45.968	ENSPMEG00000005815	-	98	45.968	Poecilia_mexicana
ENSDARG00000088367	si:cabz01069013.3	96	50.000	ENSPMEG00000017910	-	78	50.000	Poecilia_mexicana
ENSDARG00000088367	si:cabz01069013.3	89	39.924	ENSPNYG00000010647	-	93	39.924	Pundamilia_nyererei
ENSDARG00000088367	si:cabz01069013.3	90	38.644	ENSPNYG00000010637	-	77	38.644	Pundamilia_nyererei
ENSDARG00000088367	si:cabz01069013.3	92	40.217	ENSSMAG00000014864	-	75	40.217	Scophthalmus_maximus
ENSDARG00000088367	si:cabz01069013.3	95	40.000	ENSSDUG00000000695	-	78	40.000	Seriola_dumerili
ENSDARG00000088367	si:cabz01069013.3	95	40.678	ENSSLDG00000000457	-	76	40.678	Seriola_lalandi_dorsalis
ENSDARG00000088367	si:cabz01069013.3	95	41.786	ENSSLDG00000012320	-	96	41.786	Seriola_lalandi_dorsalis
ENSDARG00000088367	si:cabz01069013.3	96	49.027	ENSSPAG00000007454	-	96	44.487	Stegastes_partitus
ENSDARG00000088367	si:cabz01069013.3	95	47.568	ENSSPAG00000022865	-	87	55.882	Stegastes_partitus
ENSDARG00000088367	si:cabz01069013.3	87	42.857	ENSSPAG00000005832	-	50	40.755	Stegastes_partitus
ENSDARG00000088367	si:cabz01069013.3	93	44.172	ENSSPAG00000015016	-	93	46.000	Stegastes_partitus
ENSDARG00000088367	si:cabz01069013.3	92	48.718	ENSXCOG00000003451	-	87	51.190	Xiphophorus_couchianus
ENSDARG00000088367	si:cabz01069013.3	95	35.193	ENSXCOG00000013066	-	87	35.193	Xiphophorus_couchianus
ENSDARG00000088367	si:cabz01069013.3	90	46.354	ENSXCOG00000019481	-	81	46.857	Xiphophorus_couchianus
ENSDARG00000088367	si:cabz01069013.3	95	48.699	ENSXMAG00000027966	-	75	55.303	Xiphophorus_maculatus
ENSDARG00000088367	si:cabz01069013.3	95	48.029	ENSXMAG00000024433	-	99	46.067	Xiphophorus_maculatus
ENSDARG00000088367	si:cabz01069013.3	85	44.248	ENSXMAG00000026568	-	65	44.248	Xiphophorus_maculatus
ENSDARG00000088367	si:cabz01069013.3	89	35.000	ENSXMAG00000021009	-	56	35.689	Xiphophorus_maculatus
ENSDARG00000088367	si:cabz01069013.3	88	49.112	ENSXMAG00000025241	-	78	41.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function