EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000088619 (Gene tree)
Gene ID: 100333127
Gene Symbol: rexo4
Alias: im:7156740|si:ch73-209e20.4
Full Name: REX4 homolog%2C 3'-5' exonuclease
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 12745 bases
Position: chr21:5926777-5939521
Accession: ZDB-GENE-050411-124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000150422	RNase_T	PF00929.24	4.4e-21	1	1
ENSDARP00000109366	RNase_T	PF00929.24	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000121769	-	1870	XM_002665867	ENSDARP00000109366	418 (aa)	XP_002665913	F1QJP9
ENSDART00000151552	-	609	-	-	- (aa)	-	-
ENSDART00000151230	-	178	-	-	- (aa)	-	-
ENSDART00000193767	-	2084	-	ENSDARP00000150422	270 (aa)	-	A0A2R8QBP0

Gene Model

Click here to download ENSDARG00000088619's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000088619's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000088619	rexo4	61	41.176	ENSDARG00000079783	isg20	50	41.176
ENSDARG00000088619	rexo4	63	45.143	ENSDARG00000102266	isg20l2	55	45.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000088619	rexo4	79	67.757	ENSG00000148300	REXO4	90	47.938	Homo_sapiens
ENSDARG00000088619	rexo4	88	75.949	ENSAPOG00000019264	rexo4	99	54.751	Acanthochromis_polyacanthus
ENSDARG00000088619	rexo4	82	65.158	ENSAMEG00000011649	REXO4	88	48.677	Ailuropoda_melanoleuca
ENSDARG00000088619	rexo4	88	76.151	ENSAOCG00000004087	rexo4	99	54.186	Amphiprion_ocellaris
ENSDARG00000088619	rexo4	88	76.151	ENSAPEG00000009106	rexo4	99	54.186	Amphiprion_percula
ENSDARG00000088619	rexo4	88	75.314	ENSATEG00000017662	rexo4	98	54.884	Anabas_testudineus
ENSDARG00000088619	rexo4	80	70.642	ENSAPLG00000005865	REXO4	89	57.325	Anas_platyrhynchos
ENSDARG00000088619	rexo4	79	65.421	ENSANAG00000028404	REXO4	90	45.455	Aotus_nancymaae
ENSDARG00000088619	rexo4	86	73.950	ENSACLG00000006007	rexo4	99	51.693	Astatotilapia_calliptera
ENSDARG00000088619	rexo4	87	74.576	ENSAMXG00000013291	rexo4	85	60.372	Astyanax_mexicanus
ENSDARG00000088619	rexo4	79	63.084	ENSBTAG00000019721	REXO4	83	47.091	Bos_taurus
ENSDARG00000088619	rexo4	79	67.290	ENSCJAG00000009774	REXO4	85	49.311	Callithrix_jacchus
ENSDARG00000088619	rexo4	79	66.038	ENSCAFG00000019767	REXO4	50	66.038	Canis_familiaris
ENSDARG00000088619	rexo4	82	63.964	ENSCAFG00020000983	-	51	63.964	Canis_lupus_dingo
ENSDARG00000088619	rexo4	79	63.551	ENSCHIG00000009517	REXO4	83	48.433	Capra_hircus
ENSDARG00000088619	rexo4	82	63.348	ENSTSYG00000027492	REXO4	83	46.556	Carlito_syrichta
ENSDARG00000088619	rexo4	79	65.888	ENSCAPG00000014583	REXO4	62	65.888	Cavia_aperea
ENSDARG00000088619	rexo4	79	65.421	ENSCPOG00000001386	REXO4	81	48.476	Cavia_porcellus
ENSDARG00000088619	rexo4	79	67.757	ENSCATG00000028646	REXO4	90	48.187	Cercocebus_atys
ENSDARG00000088619	rexo4	79	63.084	ENSCLAG00000006919	REXO4	63	63.256	Chinchilla_lanigera
ENSDARG00000088619	rexo4	79	68.224	ENSCSAG00000015280	REXO4	90	47.668	Chlorocebus_sabaeus
ENSDARG00000088619	rexo4	81	72.146	ENSCPBG00000021152	REXO4	86	53.406	Chrysemys_picta_bellii
ENSDARG00000088619	rexo4	81	59.091	ENSCING00000010751	-	90	55.731	Ciona_intestinalis
ENSDARG00000088619	rexo4	79	67.290	ENSCANG00000029855	REXO4	50	67.290	Colobus_angolensis_palliatus
ENSDARG00000088619	rexo4	79	64.953	ENSCGRG00001013126	Rexo4	81	47.592	Cricetulus_griseus_chok1gshd
ENSDARG00000088619	rexo4	79	64.953	ENSCGRG00000009819	Rexo4	84	47.592	Cricetulus_griseus_crigri
ENSDARG00000088619	rexo4	87	72.803	ENSCSEG00000019343	rexo4	81	57.225	Cynoglossus_semilaevis
ENSDARG00000088619	rexo4	87	72.034	ENSCVAG00000014963	rexo4	69	67.315	Cyprinodon_variegatus
ENSDARG00000088619	rexo4	82	51.825	ENSDNOG00000002429	REXO4	84	42.410	Dasypus_novemcinctus
ENSDARG00000088619	rexo4	84	63.158	ENSDORG00000006190	Rexo4	65	63.158	Dipodomys_ordii
ENSDARG00000088619	rexo4	63	51.765	FBgn0036405	CG6833	69	47.525	Drosophila_melanogaster
ENSDARG00000088619	rexo4	54	65.986	ENSEASG00005009915	-	50	63.636	Equus_asinus_asinus
ENSDARG00000088619	rexo4	79	65.421	ENSECAG00000007896	REXO4	76	48.169	Equus_caballus
ENSDARG00000088619	rexo4	63	68.824	ENSEEUG00000012135	-	52	68.824	Erinaceus_europaeus
ENSDARG00000088619	rexo4	81	78.636	ENSELUG00000003539	rexo4	91	51.685	Esox_lucius
ENSDARG00000088619	rexo4	84	61.404	ENSFCAG00000011652	REXO4	81	47.778	Felis_catus
ENSDARG00000088619	rexo4	80	71.296	ENSFALG00000001520	REXO4	86	54.571	Ficedula_albicollis
ENSDARG00000088619	rexo4	79	64.019	ENSFDAG00000016050	REXO4	82	48.739	Fukomys_damarensis
ENSDARG00000088619	rexo4	81	77.064	ENSFHEG00000002413	rexo4	99	51.049	Fundulus_heteroclitus
ENSDARG00000088619	rexo4	82	62.896	ENSGMOG00000012876	rexo4	66	62.896	Gadus_morhua
ENSDARG00000088619	rexo4	60	76.398	ENSGALG00000030609	REXO4	94	76.398	Gallus_gallus
ENSDARG00000088619	rexo4	54	75.172	ENSGAFG00000015404	-	87	48.077	Gambusia_affinis
ENSDARG00000088619	rexo4	88	72.385	ENSGACG00000008065	rexo4	100	53.396	Gasterosteus_aculeatus
ENSDARG00000088619	rexo4	81	72.936	ENSGAGG00000010260	REXO4	86	54.039	Gopherus_agassizii
ENSDARG00000088619	rexo4	79	68.224	ENSGGOG00000014508	REXO4	50	68.224	Gorilla_gorilla
ENSDARG00000088619	rexo4	88	72.840	ENSHBUG00000000542	rexo4	99	52.511	Haplochromis_burtoni
ENSDARG00000088619	rexo4	79	64.789	ENSHGLG00000016901	REXO4	82	48.034	Heterocephalus_glaber_female
ENSDARG00000088619	rexo4	79	64.789	ENSHGLG00100017444	REXO4	82	48.034	Heterocephalus_glaber_male
ENSDARG00000088619	rexo4	90	64.754	ENSHCOG00000018196	rexo4	63	64.754	Hippocampus_comes
ENSDARG00000088619	rexo4	86	72.152	ENSIPUG00000021084	rexo4	96	52.471	Ictalurus_punctatus
ENSDARG00000088619	rexo4	81	65.000	ENSSTOG00000003754	REXO4	82	49.030	Ictidomys_tridecemlineatus
ENSDARG00000088619	rexo4	82	63.801	ENSJJAG00000013002	Rexo4	79	49.858	Jaculus_jaculus
ENSDARG00000088619	rexo4	86	73.077	ENSKMAG00000015039	rexo4	56	73.077	Kryptolebias_marmoratus
ENSDARG00000088619	rexo4	89	73.029	ENSLBEG00000025570	rexo4	99	52.326	Labrus_bergylta
ENSDARG00000088619	rexo4	81	69.683	ENSLACG00000012399	REXO4	88	50.255	Latimeria_chalumnae
ENSDARG00000088619	rexo4	89	68.595	ENSLOCG00000003577	rexo4	86	51.862	Lepisosteus_oculatus
ENSDARG00000088619	rexo4	83	61.062	ENSLAFG00000011274	REXO4	54	61.062	Loxodonta_africana
ENSDARG00000088619	rexo4	79	68.224	ENSMFAG00000042425	REXO4	50	68.224	Macaca_fascicularis
ENSDARG00000088619	rexo4	79	68.224	ENSMMUG00000000935	REXO4	50	68.224	Macaca_mulatta
ENSDARG00000088619	rexo4	79	68.224	ENSMNEG00000031604	REXO4	90	47.668	Macaca_nemestrina
ENSDARG00000088619	rexo4	79	68.224	ENSMLEG00000037716	REXO4	90	49.354	Mandrillus_leucophaeus
ENSDARG00000088619	rexo4	89	73.859	ENSMAMG00000011251	rexo4	99	52.546	Mastacembelus_armatus
ENSDARG00000088619	rexo4	86	73.950	ENSMZEG00005012336	rexo4	98	51.357	Maylandia_zebra
ENSDARG00000088619	rexo4	81	70.909	ENSMGAG00000006521	REXO4	98	53.056	Meleagris_gallopavo
ENSDARG00000088619	rexo4	89	60.166	ENSMAUG00000015137	Rexo4	53	60.166	Mesocricetus_auratus
ENSDARG00000088619	rexo4	82	63.801	ENSMICG00000008422	REXO4	85	48.209	Microcebus_murinus
ENSDARG00000088619	rexo4	79	66.822	ENSMOCG00000020607	Rexo4	82	48.324	Microtus_ochrogaster
ENSDARG00000088619	rexo4	80	70.507	ENSMODG00000012817	REXO4	87	51.302	Monodelphis_domestica
ENSDARG00000088619	rexo4	86	73.391	ENSMALG00000019705	rexo4	86	56.749	Monopterus_albus
ENSDARG00000088619	rexo4	83	64.444	MGP_CAROLIEiJ_G0023332	-	54	63.877	Mus_caroli
ENSDARG00000088619	rexo4	84	63.436	ENSMUSG00000052406	Rexo4	54	63.436	Mus_musculus
ENSDARG00000088619	rexo4	79	66.822	MGP_PahariEiJ_G0024789	Rexo4	51	66.822	Mus_pahari
ENSDARG00000088619	rexo4	84	63.877	MGP_SPRETEiJ_G0024249	-	54	63.877	Mus_spretus
ENSDARG00000088619	rexo4	81	62.273	ENSMPUG00000012315	REXO4	61	62.273	Mustela_putorius_furo
ENSDARG00000088619	rexo4	91	59.350	ENSNGAG00000010700	Rexo4	84	49.422	Nannospalax_galili
ENSDARG00000088619	rexo4	85	74.153	ENSNBRG00000011712	rexo4	98	51.636	Neolamprologus_brichardi
ENSDARG00000088619	rexo4	79	65.888	ENSNLEG00000007556	-	52	65.888	Nomascus_leucogenys
ENSDARG00000088619	rexo4	82	65.611	ENSNLEG00000013130	-	90	47.938	Nomascus_leucogenys
ENSDARG00000088619	rexo4	80	49.309	ENSMEUG00000006513	-	52	49.309	Notamacropus_eugenii
ENSDARG00000088619	rexo4	84	61.233	ENSODEG00000015721	REXO4	64	61.233	Octodon_degus
ENSDARG00000088619	rexo4	86	74.370	ENSONIG00000020052	rexo4	100	53.647	Oreochromis_niloticus
ENSDARG00000088619	rexo4	83	69.196	ENSOANG00000002453	REXO4	93	49.448	Ornithorhynchus_anatinus
ENSDARG00000088619	rexo4	89	73.029	ENSORLG00000006904	rexo4	87	57.880	Oryzias_latipes
ENSDARG00000088619	rexo4	88	73.222	ENSORLG00020013768	rexo4	87	57.682	Oryzias_latipes_hni
ENSDARG00000088619	rexo4	88	72.803	ENSORLG00015012070	rexo4	94	55.362	Oryzias_latipes_hsok
ENSDARG00000088619	rexo4	88	72.083	ENSOMEG00000018327	rexo4	86	55.435	Oryzias_melastigma
ENSDARG00000088619	rexo4	79	66.355	ENSOGAG00000014040	REXO4	86	48.066	Otolemur_garnettii
ENSDARG00000088619	rexo4	79	67.757	ENSPPAG00000027911	REXO4	50	67.757	Pan_paniscus
ENSDARG00000088619	rexo4	84	62.719	ENSPPRG00000002894	REXO4	86	46.944	Panthera_pardus
ENSDARG00000088619	rexo4	79	67.757	ENSPTRG00000023363	REXO4	90	47.287	Pan_troglodytes
ENSDARG00000088619	rexo4	79	68.224	ENSPANG00000026040	REXO4	90	49.354	Papio_anubis
ENSDARG00000088619	rexo4	88	71.130	ENSPKIG00000024761	rexo4	99	48.908	Paramormyrops_kingsleyae
ENSDARG00000088619	rexo4	82	71.946	ENSPSIG00000016908	REXO4	85	53.951	Pelodiscus_sinensis
ENSDARG00000088619	rexo4	87	71.795	ENSPMGG00000005312	rexo4	89	51.699	Periophthalmus_magnuspinnatus
ENSDARG00000088619	rexo4	79	65.421	ENSPEMG00000017982	Rexo4	51	65.421	Peromyscus_maniculatus_bairdii
ENSDARG00000088619	rexo4	80	70.046	ENSPCIG00000017379	REXO4	87	48.744	Phascolarctos_cinereus
ENSDARG00000088619	rexo4	80	76.852	ENSPFOG00000017751	rexo4	87	56.522	Poecilia_formosa
ENSDARG00000088619	rexo4	80	76.852	ENSPLAG00000010487	rexo4	86	55.946	Poecilia_latipinna
ENSDARG00000088619	rexo4	80	76.852	ENSPMEG00000020767	rexo4	87	56.250	Poecilia_mexicana
ENSDARG00000088619	rexo4	80	77.315	ENSPREG00000021841	rexo4	99	51.972	Poecilia_reticulata
ENSDARG00000088619	rexo4	81	65.909	ENSPPYG00000019735	REXO4	91	47.208	Pongo_abelii
ENSDARG00000088619	rexo4	84	59.735	ENSPCAG00000010581	REXO4	54	59.735	Procavia_capensis
ENSDARG00000088619	rexo4	79	64.019	ENSPCOG00000025466	REXO4	85	46.966	Propithecus_coquereli
ENSDARG00000088619	rexo4	79	55.869	ENSPVAG00000001429	REXO4	87	41.823	Pteropus_vampyrus
ENSDARG00000088619	rexo4	86	73.529	ENSPNYG00000013712	rexo4	99	51.467	Pundamilia_nyererei
ENSDARG00000088619	rexo4	87	77.778	ENSPNAG00000019227	rexo4	94	57.277	Pygocentrus_nattereri
ENSDARG00000088619	rexo4	79	65.888	ENSRNOG00000027867	Rexo4	83	50.427	Rattus_norvegicus
ENSDARG00000088619	rexo4	79	67.757	ENSRBIG00000037515	REXO4	50	67.757	Rhinopithecus_bieti
ENSDARG00000088619	rexo4	79	67.757	ENSRROG00000028864	REXO4	50	67.757	Rhinopithecus_roxellana
ENSDARG00000088619	rexo4	60	51.220	YOL080C	-	59	49.714	Saccharomyces_cerevisiae
ENSDARG00000088619	rexo4	83	50.673	ENSSBOG00000032587	REXO4	88	38.961	Saimiri_boliviensis_boliviensis
ENSDARG00000088619	rexo4	80	69.585	ENSSHAG00000005827	REXO4	89	50.806	Sarcophilus_harrisii
ENSDARG00000088619	rexo4	81	73.182	ENSSFOG00015017394	rexo4	61	73.182	Scleropages_formosus
ENSDARG00000088619	rexo4	86	77.778	ENSSMAG00000015441	rexo4	97	52.315	Scophthalmus_maximus
ENSDARG00000088619	rexo4	81	79.358	ENSSDUG00000023346	rexo4	97	53.864	Seriola_dumerili
ENSDARG00000088619	rexo4	81	80.275	ENSSLDG00000011085	rexo4	99	55.841	Seriola_lalandi_dorsalis
ENSDARG00000088619	rexo4	83	70.089	ENSSPUG00000015868	REXO4	97	50.000	Sphenodon_punctatus
ENSDARG00000088619	rexo4	89	75.314	ENSSPAG00000007221	rexo4	89	54.987	Stegastes_partitus
ENSDARG00000088619	rexo4	83	62.555	ENSSSCG00000023173	REXO4	82	47.632	Sus_scrofa
ENSDARG00000088619	rexo4	79	74.178	ENSTGUG00000005537	REXO4	89	53.067	Taeniopygia_guttata
ENSDARG00000088619	rexo4	86	77.253	ENSTRUG00000013225	rexo4	63	77.253	Takifugu_rubripes
ENSDARG00000088619	rexo4	88	74.790	ENSTNIG00000005873	rexo4	100	56.649	Tetraodon_nigroviridis
ENSDARG00000088619	rexo4	82	64.706	ENSUAMG00000018676	REXO4	86	47.619	Ursus_americanus
ENSDARG00000088619	rexo4	82	58.824	ENSUMAG00000023164	REXO4	74	50.883	Ursus_maritimus
ENSDARG00000088619	rexo4	82	63.964	ENSVVUG00000027337	REXO4	51	63.964	Vulpes_vulpes
ENSDARG00000088619	rexo4	63	74.556	ENSXETG00000023096	rexo4	90	47.321	Xenopus_tropicalis
ENSDARG00000088619	rexo4	81	75.688	ENSXMAG00000013686	rexo4	89	55.827	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	-	IEA	Function