EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000089428 (Gene tree)
Gene ID: 553657
Gene Symbol: rab12
Alias: zgc:111945
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 35927 bases
Position: chr2:54387710-54423636
Accession: ZDB-GENE-050522-555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000110018	MMR_HSR1	PF01926.23	7.4e-07	1	1
ENSDARP00000154059	MMR_HSR1	PF01926.23	7.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127124	-	1253	XM_021480399	ENSDARP00000110018	235 (aa)	XP_021336074	Q502Q0
ENSDART00000189236	-	6010	-	ENSDARP00000154059	235 (aa)	-	Q502Q0

Gene Model

Click here to download ENSDARG00000089428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000089428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000089428	rab12	67	44.586	ENSDARG00000018107	rab3da	93	44.586
ENSDARG00000089428	rab12	86	40.094	ENSDARG00000041878	rab11ba	78	45.000
ENSDARG00000089428	rab12	75	38.095	ENSDARG00000052290	rab33ba	78	38.095
ENSDARG00000089428	rab12	70	44.848	ENSDARG00000014340	rab11al	76	44.848
ENSDARG00000089428	rab12	80	37.766	ENSDARG00000031343	rab6bb	75	41.026
ENSDARG00000089428	rab12	83	38.776	ENSDARG00000074246	rab14	80	41.040
ENSDARG00000089428	rab12	86	40.845	ENSDARG00000041450	rab11a	95	40.845
ENSDARG00000089428	rab12	68	34.161	ENSDARG00000006553	rras	87	35.429
ENSDARG00000089428	rab12	86	42.365	ENSDARG00000114797	rab3b	77	46.746
ENSDARG00000089428	rab12	72	38.150	ENSDARG00000021287	rab7b	82	39.053
ENSDARG00000089428	rab12	83	38.614	ENSDARG00000003257	zgc:101559	81	39.267
ENSDARG00000089428	rab12	64	32.450	ENSDARG00000013161	zgc:55558	87	33.533
ENSDARG00000089428	rab12	64	32.450	ENSDARG00000010844	kras	86	33.533
ENSDARG00000089428	rab12	69	47.531	ENSDARG00000058425	rab35b	95	42.708
ENSDARG00000089428	rab12	69	48.780	ENSDARG00000055291	rab18a	79	48.780
ENSDARG00000089428	rab12	76	38.798	ENSDARG00000087243	zgc:100918	88	38.798
ENSDARG00000089428	rab12	70	49.091	ENSDARG00000033056	zgc:171927	78	49.091
ENSDARG00000089428	rab12	87	39.130	ENSDARG00000052954	rab25b	86	40.860
ENSDARG00000089428	rab12	69	30.061	ENSDARG00000038225	nras	92	31.285
ENSDARG00000089428	rab12	74	38.286	ENSDARG00000034522	rab6ba	84	38.286
ENSDARG00000089428	rab12	86	38.498	ENSDARG00000090086	rab11bb	75	44.848
ENSDARG00000089428	rab12	71	48.795	ENSDARG00000037884	rab30	82	48.795
ENSDARG00000089428	rab12	71	35.294	ENSDARG00000100379	si:dkey-34d22.2	91	35.294
ENSDARG00000089428	rab12	72	50.888	ENSDARG00000029663	rab1ab	84	50.888
ENSDARG00000089428	rab12	86	36.139	ENSDARG00000103714	rab6a	76	40.881
ENSDARG00000089428	rab12	70	47.273	ENSDARG00000102078	CABZ01072548.1	84	47.273
ENSDARG00000089428	rab12	66	38.961	ENSDARG00000004151	rab23	69	38.554
ENSDARG00000089428	rab12	67	38.509	ENSDARG00000014058	rab36	61	38.509
ENSDARG00000089428	rab12	62	37.333	ENSDARG00000010977	rab34b	63	38.509
ENSDARG00000089428	rab12	66	32.278	ENSDARG00000062865	mras	85	32.278
ENSDARG00000089428	rab12	86	37.864	ENSDARG00000034215	rab42a	80	40.698
ENSDARG00000089428	rab12	68	34.591	ENSDARG00000063321	rabl2	70	34.591
ENSDARG00000089428	rab12	72	50.296	ENSDARG00000056479	rab1bb	84	50.296
ENSDARG00000089428	rab12	69	37.423	ENSDARG00000015807	rab22a	83	37.423
ENSDARG00000089428	rab12	74	49.133	ENSDARG00000103934	megf8	99	49.133
ENSDARG00000089428	rab12	70	38.690	ENSDARG00000045027	rab9a	83	38.690
ENSDARG00000089428	rab12	86	36.318	ENSDARG00000029885	rab41	73	40.385
ENSDARG00000089428	rab12	73	49.419	ENSDARG00000034771	rab13	84	50.595
ENSDARG00000089428	rab12	69	31.707	ENSDARG00000005049	rab20	84	30.769
ENSDARG00000089428	rab12	67	37.037	ENSDARG00000045628	rab34a	66	37.654
ENSDARG00000089428	rab12	64	31.788	ENSDARG00000098497	hrasa	86	32.934
ENSDARG00000089428	rab12	70	44.910	ENSDARG00000036501	rab39bb	78	44.910
ENSDARG00000089428	rab12	80	48.421	ENSDARG00000052263	rab1aa	90	49.724
ENSDARG00000089428	rab12	79	40.323	ENSDARG00000058800	rab25a	86	40.323
ENSDARG00000089428	rab12	86	36.318	ENSDARG00000018602	rab5aa	81	38.547
ENSDARG00000089428	rab12	85	33.659	ENSDARG00000103391	rab9b	86	36.207
ENSDARG00000089428	rab12	79	43.085	ENSDARG00000026484	rab15	88	43.085
ENSDARG00000089428	rab12	79	38.947	ENSDARG00000020497	rab7a	81	38.462
ENSDARG00000089428	rab12	69	48.780	ENSDARG00000098344	rab18b	79	48.780
ENSDARG00000089428	rab12	70	44.311	ENSDARG00000019312	rab39ba	78	44.311
ENSDARG00000089428	rab12	77	37.778	ENSDARG00000007257	rab5ab	81	37.778
ENSDARG00000089428	rab12	72	49.704	ENSDARG00000058044	rab1ba	86	49.704
ENSDARG00000089428	rab12	72	34.503	ENSDARG00000102580	CU571310.1	81	34.503
ENSDARG00000089428	rab12	64	31.126	ENSDARG00000005651	hrasb	99	31.081
ENSDARG00000089428	rab12	50	33.333	ENSDARG00000057857	arfrp1	64	33.333
ENSDARG00000089428	rab12	68	31.875	ENSDARG00000036252	rras2	85	32.370
ENSDARG00000089428	rab12	73	44.444	ENSDARG00000020261	rab2a	80	44.444
ENSDARG00000089428	rab12	71	44.643	ENSDARG00000037967	si:dkey-16l2.16	88	49.524
ENSDARG00000089428	rab12	88	38.208	ENSDARG00000035188	rab14l	80	41.618
ENSDARG00000089428	rab12	66	40.000	ENSDARG00000026098	si:dkey-13a21.4	77	40.000
ENSDARG00000089428	rab12	82	36.869	ENSDARG00000057394	rab33a	69	41.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000089428	rab12	93	83.111	ENSG00000206418	RAB12	100	83.197	Homo_sapiens
ENSDARG00000089428	rab12	92	77.169	ENSAMEG00000007452	RAB12	98	78.761	Ailuropoda_melanoleuca
ENSDARG00000089428	rab12	94	93.182	ENSACIG00000020616	rab12	100	87.295	Amphilophus_citrinellus
ENSDARG00000089428	rab12	94	92.273	ENSAOCG00000002130	rab12	100	86.420	Amphiprion_ocellaris
ENSDARG00000089428	rab12	94	92.273	ENSAPEG00000013255	rab12	100	86.420	Amphiprion_percula
ENSDARG00000089428	rab12	94	92.727	ENSATEG00000019683	rab12	100	87.190	Anabas_testudineus
ENSDARG00000089428	rab12	85	88.000	ENSACAG00000003360	RAB12	88	85.965	Anolis_carolinensis
ENSDARG00000089428	rab12	94	94.091	ENSACLG00000007696	rab12	100	88.066	Astatotilapia_calliptera
ENSDARG00000089428	rab12	100	88.211	ENSAMXG00000004882	rab12	100	88.211	Astyanax_mexicanus
ENSDARG00000089428	rab12	93	82.222	ENSBTAG00000010356	RAB12	100	82.377	Bos_taurus
ENSDARG00000089428	rab12	93	82.743	ENSCJAG00000015468	RAB12	72	82.857	Callithrix_jacchus
ENSDARG00000089428	rab12	93	83.111	ENSCAFG00020023721	RAB12	84	83.197	Canis_lupus_dingo
ENSDARG00000089428	rab12	93	82.222	ENSCHIG00000016103	RAB12	100	82.377	Capra_hircus
ENSDARG00000089428	rab12	81	89.529	ENSCPOG00000022689	RAB12	100	88.571	Cavia_porcellus
ENSDARG00000089428	rab12	93	82.743	ENSCCAG00000022862	RAB12	100	82.857	Cebus_capucinus
ENSDARG00000089428	rab12	87	86.829	ENSCATG00000037784	RAB12	94	86.344	Cercocebus_atys
ENSDARG00000089428	rab12	93	81.223	ENSCSAG00000017569	RAB12	72	81.452	Chlorocebus_sabaeus
ENSDARG00000089428	rab12	93	83.628	ENSCPBG00000028375	RAB12	100	83.673	Chrysemys_picta_bellii
ENSDARG00000089428	rab12	92	83.105	ENSCANG00000031453	RAB12	99	87.215	Colobus_angolensis_palliatus
ENSDARG00000089428	rab12	93	82.589	ENSCGRG00001006958	Rab12	83	81.893	Cricetulus_griseus_chok1gshd
ENSDARG00000089428	rab12	94	93.182	ENSCSEG00000016933	rab12	100	87.654	Cynoglossus_semilaevis
ENSDARG00000089428	rab12	94	93.636	ENSCVAG00000003539	rab12	91	92.444	Cyprinodon_variegatus
ENSDARG00000089428	rab12	87	86.829	ENSDNOG00000046064	RAB12	56	83.884	Dasypus_novemcinctus
ENSDARG00000089428	rab12	88	87.019	ENSDORG00000008920	Rab12	100	86.784	Dipodomys_ordii
ENSDARG00000089428	rab12	85	64.322	ENSEBUG00000006581	rab12	96	64.322	Eptatretus_burgeri
ENSDARG00000089428	rab12	93	83.482	ENSEASG00005002926	RAB12	83	83.539	Equus_asinus_asinus
ENSDARG00000089428	rab12	93	83.482	ENSECAG00000007384	RAB12	71	83.539	Equus_caballus
ENSDARG00000089428	rab12	100	87.083	ENSELUG00000007123	rab12	100	87.083	Esox_lucius
ENSDARG00000089428	rab12	87	86.829	ENSFCAG00000027710	RAB12	72	82.787	Felis_catus
ENSDARG00000089428	rab12	93	94.037	ENSFHEG00000004319	rab12	100	87.347	Fundulus_heteroclitus
ENSDARG00000089428	rab12	86	86.893	ENSGMOG00000012335	rab12	87	87.379	Gadus_morhua
ENSDARG00000089428	rab12	93	80.519	ENSGALG00000033608	RAB12	100	82.400	Gallus_gallus
ENSDARG00000089428	rab12	89	84.332	ENSGACG00000016639	rab12	100	84.793	Gasterosteus_aculeatus
ENSDARG00000089428	rab12	93	83.628	ENSGAGG00000007278	RAB12	100	83.673	Gopherus_agassizii
ENSDARG00000089428	rab12	94	94.091	ENSHBUG00000008497	rab12	100	88.066	Haplochromis_burtoni
ENSDARG00000089428	rab12	93	83.258	ENSHGLG00000006189	RAB12	90	83.051	Heterocephalus_glaber_female
ENSDARG00000089428	rab12	100	83.951	ENSHCOG00000012376	rab12	100	83.951	Hippocampus_comes
ENSDARG00000089428	rab12	94	92.793	ENSIPUG00000017401	rab12	100	87.295	Ictalurus_punctatus
ENSDARG00000089428	rab12	93	83.182	ENSSTOG00000025122	RAB12	97	87.273	Ictidomys_tridecemlineatus
ENSDARG00000089428	rab12	88	86.538	ENSJJAG00000019064	Rab12	99	86.344	Jaculus_jaculus
ENSDARG00000089428	rab12	100	86.611	ENSKMAG00000020056	rab12	100	86.611	Kryptolebias_marmoratus
ENSDARG00000089428	rab12	94	91.818	ENSLBEG00000013756	rab12	100	86.364	Labrus_bergylta
ENSDARG00000089428	rab12	100	80.723	ENSLACG00000010461	RAB12	100	81.124	Latimeria_chalumnae
ENSDARG00000089428	rab12	88	90.821	ENSLOCG00000002680	rab12	100	83.871	Lepisosteus_oculatus
ENSDARG00000089428	rab12	93	81.938	ENSMFAG00000043551	RAB12	100	82.114	Macaca_fascicularis
ENSDARG00000089428	rab12	87	86.829	ENSMNEG00000040853	RAB12	90	86.344	Macaca_nemestrina
ENSDARG00000089428	rab12	94	93.182	ENSMAMG00000006862	rab12	100	87.603	Mastacembelus_armatus
ENSDARG00000089428	rab12	94	94.091	ENSMZEG00005024316	rab12	100	88.066	Maylandia_zebra
ENSDARG00000089428	rab12	86	84.804	ENSMGAG00000009197	RAB12	100	89.216	Meleagris_gallopavo
ENSDARG00000089428	rab12	93	82.589	ENSMAUG00000008371	Rab12	83	81.893	Mesocricetus_auratus
ENSDARG00000089428	rab12	87	86.829	ENSMICG00000030661	RAB12	99	84.388	Microcebus_murinus
ENSDARG00000089428	rab12	92	83.105	ENSMOCG00000000452	Rab12	100	87.215	Microtus_ochrogaster
ENSDARG00000089428	rab12	93	81.498	ENSMODG00000021452	RAB12	73	82.520	Monodelphis_domestica
ENSDARG00000089428	rab12	96	89.333	ENSMALG00000015762	rab12	100	85.537	Monopterus_albus
ENSDARG00000089428	rab12	93	82.589	MGP_CAROLIEiJ_G0021839	Rab12	84	82.716	Mus_caroli
ENSDARG00000089428	rab12	93	82.589	ENSMUSG00000023460	Rab12	100	82.716	Mus_musculus
ENSDARG00000089428	rab12	93	82.589	MGP_PahariEiJ_G0020826	Rab12	100	82.716	Mus_pahari
ENSDARG00000089428	rab12	93	82.589	MGP_SPRETEiJ_G0022750	Rab12	83	82.716	Mus_spretus
ENSDARG00000089428	rab12	93	83.482	ENSMLUG00000002883	RAB12	100	83.539	Myotis_lucifugus
ENSDARG00000089428	rab12	88	86.538	ENSNGAG00000024103	-	97	85.903	Nannospalax_galili
ENSDARG00000089428	rab12	94	76.339	ENSNGAG00000019722	-	100	73.251	Nannospalax_galili
ENSDARG00000089428	rab12	94	94.091	ENSNBRG00000014428	rab12	100	88.066	Neolamprologus_brichardi
ENSDARG00000089428	rab12	93	83.111	ENSNLEG00000006939	RAB12	100	83.197	Nomascus_leucogenys
ENSDARG00000089428	rab12	100	78.862	ENSMEUG00000000493	RAB12	100	82.520	Notamacropus_eugenii
ENSDARG00000089428	rab12	92	84.475	ENSODEG00000006414	RAB12	100	88.584	Octodon_degus
ENSDARG00000089428	rab12	94	93.636	ENSONIG00000018469	rab12	100	87.654	Oreochromis_niloticus
ENSDARG00000089428	rab12	94	94.545	ENSORLG00000003902	rab12	100	89.669	Oryzias_latipes
ENSDARG00000089428	rab12	94	94.091	ENSORLG00020005131	rab12	100	89.256	Oryzias_latipes_hni
ENSDARG00000089428	rab12	94	94.545	ENSORLG00015007869	rab12	100	89.256	Oryzias_latipes_hsok
ENSDARG00000089428	rab12	94	94.091	ENSOMEG00000008191	rab12	100	88.843	Oryzias_melastigma
ENSDARG00000089428	rab12	89	84.286	ENSOGAG00000028002	RAB12	99	88.571	Otolemur_garnettii
ENSDARG00000089428	rab12	81	88.482	ENSOARG00000000728	RAB12	94	83.406	Ovis_aries
ENSDARG00000089428	rab12	87	84.058	ENSPPAG00000009152	RAB12	98	88.406	Pan_paniscus
ENSDARG00000089428	rab12	87	86.829	ENSPPRG00000024521	RAB12	100	82.787	Panthera_pardus
ENSDARG00000089428	rab12	93	83.111	ENSPTRG00000009853	RAB12	100	83.197	Pan_troglodytes
ENSDARG00000089428	rab12	93	82.018	ENSPANG00000009320	RAB12	100	82.186	Papio_anubis
ENSDARG00000089428	rab12	94	90.498	ENSPKIG00000008579	rab12	100	86.250	Paramormyrops_kingsleyae
ENSDARG00000089428	rab12	100	83.884	ENSPMGG00000001890	rab12	100	84.711	Periophthalmus_magnuspinnatus
ENSDARG00000089428	rab12	93	83.036	ENSPEMG00000021032	Rab12	84	82.305	Peromyscus_maniculatus_bairdii
ENSDARG00000089428	rab12	93	82.379	ENSPCIG00000010453	RAB12	61	82.520	Phascolarctos_cinereus
ENSDARG00000089428	rab12	95	91.031	ENSPFOG00000001579	rab12	100	86.066	Poecilia_formosa
ENSDARG00000089428	rab12	95	91.031	ENSPLAG00000013594	rab12	100	86.066	Poecilia_latipinna
ENSDARG00000089428	rab12	95	91.031	ENSPMEG00000010417	rab12	100	86.066	Poecilia_mexicana
ENSDARG00000089428	rab12	95	91.031	ENSPREG00000017487	rab12	100	86.066	Poecilia_reticulata
ENSDARG00000089428	rab12	93	83.111	ENSPPYG00000009015	-	72	83.197	Pongo_abelii
ENSDARG00000089428	rab12	93	82.222	ENSPCAG00000015007	RAB12	100	82.787	Procavia_capensis
ENSDARG00000089428	rab12	93	83.111	ENSPCOG00000019816	RAB12	100	83.197	Propithecus_coquereli
ENSDARG00000089428	rab12	93	82.667	ENSPVAG00000002757	RAB12	100	82.787	Pteropus_vampyrus
ENSDARG00000089428	rab12	94	94.091	ENSPNYG00000005654	rab12	100	88.066	Pundamilia_nyererei
ENSDARG00000089428	rab12	94	94.091	ENSPNYG00000023905	rab12	100	88.066	Pundamilia_nyererei
ENSDARG00000089428	rab12	100	89.431	ENSPNAG00000015031	rab12	100	89.431	Pygocentrus_nattereri
ENSDARG00000089428	rab12	93	80.889	ENSRNOG00000019295	Rab12	91	80.000	Rattus_norvegicus
ENSDARG00000089428	rab12	87	86.829	ENSRBIG00000028760	RAB12	97	86.344	Rhinopithecus_bieti
ENSDARG00000089428	rab12	88	86.538	ENSRROG00000019249	RAB12	95	86.344	Rhinopithecus_roxellana
ENSDARG00000089428	rab12	95	79.204	ENSSBOG00000021125	RAB12	82	84.545	Saimiri_boliviensis_boliviensis
ENSDARG00000089428	rab12	92	81.858	ENSSHAG00000001489	RAB12	100	81.858	Sarcophilus_harrisii
ENSDARG00000089428	rab12	93	92.202	ENSSMAG00000012678	rab12	100	86.777	Scophthalmus_maximus
ENSDARG00000089428	rab12	94	93.182	ENSSDUG00000008505	rab12	100	87.603	Seriola_dumerili
ENSDARG00000089428	rab12	94	93.182	ENSSLDG00000022239	rab12	100	87.603	Seriola_lalandi_dorsalis
ENSDARG00000089428	rab12	93	82.819	ENSSPUG00000003222	RAB12	100	83.333	Sphenodon_punctatus
ENSDARG00000089428	rab12	94	92.727	ENSSPAG00000010822	rab12	100	86.831	Stegastes_partitus
ENSDARG00000089428	rab12	93	82.667	ENSSSCG00000038026	RAB12	100	82.377	Sus_scrofa
ENSDARG00000089428	rab12	93	80.952	ENSTGUG00000009889	RAB12	100	82.400	Taeniopygia_guttata
ENSDARG00000089428	rab12	97	89.744	ENSTRUG00000024455	rab12	97	89.744	Takifugu_rubripes
ENSDARG00000089428	rab12	100	85.537	ENSTNIG00000014859	rab12	100	85.537	Tetraodon_nigroviridis
ENSDARG00000089428	rab12	92	84.475	ENSTTRG00000008711	RAB12	99	86.758	Tursiops_truncatus
ENSDARG00000089428	rab12	93	83.111	ENSUAMG00000018092	RAB12	100	83.197	Ursus_americanus
ENSDARG00000089428	rab12	87	86.341	ENSVVUG00000011748	RAB12	99	86.878	Vulpes_vulpes
ENSDARG00000089428	rab12	89	84.762	ENSXETG00000004289	rab12	79	81.048	Xenopus_tropicalis
ENSDARG00000089428	rab12	95	89.686	ENSXCOG00000019310	rab12	100	84.836	Xiphophorus_couchianus
ENSDARG00000089428	rab12	95	90.135	ENSXMAG00000023617	rab12	100	85.246	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005802	trans-Golgi network	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process