EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDARG00000089663 (Gene tree)
Gene ID
100535720
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
11603 bases
Position
chr22:31660964-31672566
Accession
ZDB-GENE-161207-2
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000104495LSMPF01423.225.3e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000128247-1650XM_003201131ENSDARP00000104495102 (aa)XP_003201179E7EZE6
Gene Model
Click here to download ENSDARG00000089663's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
dre03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000089663's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000089663lsm37732.927ENSDARG00000040440snrpd26932.927
ENSDARG00000089663lsm37436.000ENSDARG00000071573lsm58236.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000089663lsm310097.059ENSG00000170860LSM310097.059Homo_sapiens
ENSDARG00000089663lsm310096.078ENSAPOG00000018947lsm310096.078Acanthochromis_polyacanthus
ENSDARG00000089663lsm310097.059ENSAMEG00000009405LSM310097.059Ailuropoda_melanoleuca
ENSDARG00000089663lsm310095.098ENSACIG00000004574lsm37195.098Amphilophus_citrinellus
ENSDARG00000089663lsm310096.078ENSAOCG00000007658lsm310096.078Amphiprion_ocellaris
ENSDARG00000089663lsm310096.078ENSAPEG00000018621lsm310096.078Amphiprion_percula
ENSDARG00000089663lsm310096.078ENSATEG00000005153lsm310096.078Anabas_testudineus
ENSDARG00000089663lsm39398.947ENSAPLG00000014499LSM310098.947Anas_platyrhynchos
ENSDARG00000089663lsm310096.078ENSACAG00000013503LSM310096.078Anolis_carolinensis
ENSDARG00000089663lsm310097.059ENSANAG00000034627LSM310097.059Aotus_nancymaae
ENSDARG00000089663lsm310094.118ENSANAG00000002903-10094.118Aotus_nancymaae
ENSDARG00000089663lsm39597.938ENSACLG00000001726-9497.938Astatotilapia_calliptera
ENSDARG00000089663lsm310098.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSDARG00000089663lsm39498.958ENSBTAG00000007363LSM310098.958Bos_taurus
ENSDARG00000089663lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSDARG00000089663lsm310095.098ENSCAFG00000001760LSM310095.098Canis_familiaris
ENSDARG00000089663lsm310094.118ENSCAFG00020026452-10094.118Canis_lupus_dingo
ENSDARG00000089663lsm310095.098ENSCAFG00020017266-10095.098Canis_lupus_dingo
ENSDARG00000089663lsm310088.235ENSCAFG00020016680-10088.235Canis_lupus_dingo
ENSDARG00000089663lsm310086.916ENSCAFG00020020950-10086.916Canis_lupus_dingo
ENSDARG00000089663lsm310095.098ENSCAFG00020021584-10095.098Canis_lupus_dingo
ENSDARG00000089663lsm310097.059ENSCHIG00000024650LSM310097.059Capra_hircus
ENSDARG00000089663lsm310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSDARG00000089663lsm39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSDARG00000089663lsm39498.958ENSCAPG00000015760LSM310098.958Cavia_aperea
ENSDARG00000089663lsm310097.059ENSCPOG00000034071LSM310097.059Cavia_porcellus
ENSDARG00000089663lsm310077.451ENSCCAG00000032763-10077.451Cebus_capucinus
ENSDARG00000089663lsm310097.059ENSCCAG00000036499-10097.059Cebus_capucinus
ENSDARG00000089663lsm310097.059ENSCCAG00000019503-10097.059Cebus_capucinus
ENSDARG00000089663lsm310097.059ENSCATG00000039421LSM310097.059Cercocebus_atys
ENSDARG00000089663lsm39977.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSDARG00000089663lsm310097.059ENSCLAG00000015997LSM310097.059Chinchilla_lanigera
ENSDARG00000089663lsm310092.157ENSCSAG00000019525-10092.157Chlorocebus_sabaeus
ENSDARG00000089663lsm310096.078ENSCPBG00000014531LSM310096.078Chrysemys_picta_bellii
ENSDARG00000089663lsm310081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSDARG00000089663lsm310094.118ENSCANG00000038037-10094.118Colobus_angolensis_palliatus
ENSDARG00000089663lsm310097.059ENSCANG00000033944-10097.059Colobus_angolensis_palliatus
ENSDARG00000089663lsm310092.157ENSCANG00000018782-10092.157Colobus_angolensis_palliatus
ENSDARG00000089663lsm310073.786ENSCGRG00001008639-10073.786Cricetulus_griseus_chok1gshd
ENSDARG00000089663lsm310097.059ENSCGRG00001017598Lsm310097.059Cricetulus_griseus_chok1gshd
ENSDARG00000089663lsm39884.000ENSCGRG00001011396-10084.000Cricetulus_griseus_chok1gshd
ENSDARG00000089663lsm310097.059ENSCGRG00000016159Lsm310097.059Cricetulus_griseus_crigri
ENSDARG00000089663lsm39384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSDARG00000089663lsm310096.078ENSCSEG00000015071lsm37796.078Cynoglossus_semilaevis
ENSDARG00000089663lsm310095.098ENSCVAG00000006933lsm310095.098Cyprinodon_variegatus
ENSDARG00000089663lsm310097.059ENSDNOG00000030808LSM310097.059Dasypus_novemcinctus
ENSDARG00000089663lsm310097.059ENSDORG00000006894-10097.059Dipodomys_ordii
ENSDARG00000089663lsm310077.451ENSDORG00000024490-10077.451Dipodomys_ordii
ENSDARG00000089663lsm310078.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSDARG00000089663lsm310097.059ENSETEG00000016207LSM310097.059Echinops_telfairi
ENSDARG00000089663lsm310090.196ENSEBUG00000004943lsm310090.196Eptatretus_burgeri
ENSDARG00000089663lsm310097.059ENSEASG00005015443LSM310097.059Equus_asinus_asinus
ENSDARG00000089663lsm310097.059ENSECAG00000007803LSM310097.059Equus_caballus
ENSDARG00000089663lsm310097.059ENSELUG00000018922lsm310097.059Esox_lucius
ENSDARG00000089663lsm310073.529ENSFCAG00000044344-10073.529Felis_catus
ENSDARG00000089663lsm310097.059ENSFCAG00000038453LSM310097.059Felis_catus
ENSDARG00000089663lsm310096.078ENSFALG00000012644LSM310096.078Ficedula_albicollis
ENSDARG00000089663lsm310097.059ENSFDAG00000011470LSM310097.059Fukomys_damarensis
ENSDARG00000089663lsm310096.078ENSFHEG00000000876lsm310096.078Fundulus_heteroclitus
ENSDARG00000089663lsm39397.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSDARG00000089663lsm310096.078ENSGAFG00000013965lsm310096.078Gambusia_affinis
ENSDARG00000089663lsm310096.078ENSGACG00000003488lsm310096.078Gasterosteus_aculeatus
ENSDARG00000089663lsm310096.078ENSGAGG00000025707LSM310096.078Gopherus_agassizii
ENSDARG00000089663lsm310097.059ENSGGOG00000010006LSM310097.059Gorilla_gorilla
ENSDARG00000089663lsm310096.078ENSHBUG00000022399lsm310096.078Haplochromis_burtoni
ENSDARG00000089663lsm310097.059ENSHGLG00000000651LSM310097.059Heterocephalus_glaber_female
ENSDARG00000089663lsm310077.451ENSHGLG00000015564-10077.451Heterocephalus_glaber_female
ENSDARG00000089663lsm310077.451ENSHGLG00100010658-10077.451Heterocephalus_glaber_male
ENSDARG00000089663lsm310097.059ENSHGLG00100011343LSM310097.059Heterocephalus_glaber_male
ENSDARG00000089663lsm310095.098ENSHCOG00000013481lsm310095.098Hippocampus_comes
ENSDARG00000089663lsm310098.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSDARG00000089663lsm310097.059ENSSTOG00000006842LSM310097.059Ictidomys_tridecemlineatus
ENSDARG00000089663lsm310088.235ENSJJAG00000012797-10088.235Jaculus_jaculus
ENSDARG00000089663lsm39975.490ENSJJAG00000018311-10075.490Jaculus_jaculus
ENSDARG00000089663lsm310097.059ENSJJAG00000017351Lsm310097.059Jaculus_jaculus
ENSDARG00000089663lsm310095.098ENSKMAG00000015182lsm310095.098Kryptolebias_marmoratus
ENSDARG00000089663lsm39596.907ENSLBEG00000021292lsm39996.907Labrus_bergylta
ENSDARG00000089663lsm310096.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSDARG00000089663lsm310096.117ENSLAFG00000023308LSM310096.117Loxodonta_africana
ENSDARG00000089663lsm310097.059ENSMFAG00000003185LSM310097.059Macaca_fascicularis
ENSDARG00000089663lsm39380.000ENSMMUG00000002294-9180.000Macaca_mulatta
ENSDARG00000089663lsm310097.059ENSMMUG00000023126LSM310097.059Macaca_mulatta
ENSDARG00000089663lsm310075.490ENSMMUG00000043596-10075.490Macaca_mulatta
ENSDARG00000089663lsm310097.059ENSMNEG00000043632LSM310097.059Macaca_nemestrina
ENSDARG00000089663lsm39979.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSDARG00000089663lsm310097.059ENSMLEG00000036162LSM310097.059Mandrillus_leucophaeus
ENSDARG00000089663lsm310096.078ENSMAMG00000012807lsm310096.078Mastacembelus_armatus
ENSDARG00000089663lsm310096.078ENSMZEG00005016682lsm37396.078Maylandia_zebra
ENSDARG00000089663lsm39498.958ENSMGAG00000007776LSM310098.958Meleagris_gallopavo
ENSDARG00000089663lsm310082.353ENSMICG00000027821-10082.353Microcebus_murinus
ENSDARG00000089663lsm310096.078ENSMICG00000032361-10096.078Microcebus_murinus
ENSDARG00000089663lsm310097.059ENSMOCG00000014269Lsm310097.059Microtus_ochrogaster
ENSDARG00000089663lsm310095.098ENSMMOG00000020715lsm310095.098Mola_mola
ENSDARG00000089663lsm310098.039ENSMODG00000007275LSM310098.039Monodelphis_domestica
ENSDARG00000089663lsm310096.078ENSMALG00000006485lsm310096.078Monopterus_albus
ENSDARG00000089663lsm310097.059ENSMUSG00000034192Lsm310097.059Mus_musculus
ENSDARG00000089663lsm310097.059MGP_PahariEiJ_G0022402Lsm310097.059Mus_pahari
ENSDARG00000089663lsm310097.059MGP_SPRETEiJ_G0029681Lsm310097.059Mus_spretus
ENSDARG00000089663lsm38389.412ENSMPUG00000017256-10089.412Mustela_putorius_furo
ENSDARG00000089663lsm39785.859ENSMPUG00000019120-9785.859Mustela_putorius_furo
ENSDARG00000089663lsm310092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSDARG00000089663lsm310097.059ENSMLUG00000010677LSM310097.059Myotis_lucifugus
ENSDARG00000089663lsm39978.218ENSNGAG00000010207-9978.218Nannospalax_galili
ENSDARG00000089663lsm310072.549ENSNGAG00000013716-10072.549Nannospalax_galili
ENSDARG00000089663lsm310097.059ENSNGAG00000022450Lsm310097.059Nannospalax_galili
ENSDARG00000089663lsm310096.078ENSNBRG00000014318lsm310096.078Neolamprologus_brichardi
ENSDARG00000089663lsm310097.059ENSNLEG00000005079LSM310097.059Nomascus_leucogenys
ENSDARG00000089663lsm310088.235ENSNLEG00000030229-10088.235Nomascus_leucogenys
ENSDARG00000089663lsm310095.098ENSODEG00000019158-10095.098Octodon_degus
ENSDARG00000089663lsm310097.059ENSODEG00000001726LSM310097.059Octodon_degus
ENSDARG00000089663lsm310096.078ENSODEG00000019740-10096.078Octodon_degus
ENSDARG00000089663lsm310089.216ENSODEG00000019403-10089.216Octodon_degus
ENSDARG00000089663lsm310096.078ENSONIG00000021369-10096.078Oreochromis_niloticus
ENSDARG00000089663lsm310096.078ENSONIG00000000370lsm310096.078Oreochromis_niloticus
ENSDARG00000089663lsm310098.039ENSOANG00000012273LSM310098.039Ornithorhynchus_anatinus
ENSDARG00000089663lsm310097.059ENSOCUG00000027653-10097.059Oryctolagus_cuniculus
ENSDARG00000089663lsm310092.157ENSOCUG00000011088-10092.157Oryctolagus_cuniculus
ENSDARG00000089663lsm310096.078ENSORLG00000025900lsm310096.078Oryzias_latipes
ENSDARG00000089663lsm310096.078ENSORLG00020007125lsm310096.078Oryzias_latipes_hni
ENSDARG00000089663lsm310096.078ENSORLG00015002944lsm310096.078Oryzias_latipes_hsok
ENSDARG00000089663lsm310096.078ENSOMEG00000001915lsm310096.078Oryzias_melastigma
ENSDARG00000089663lsm39696.939ENSOGAG00000028858-10096.939Otolemur_garnettii
ENSDARG00000089663lsm310097.059ENSOGAG00000007659-10097.059Otolemur_garnettii
ENSDARG00000089663lsm310087.255ENSOGAG00000033051-10087.255Otolemur_garnettii
ENSDARG00000089663lsm310096.117ENSOARG00000000600LSM310096.117Ovis_aries
ENSDARG00000089663lsm310097.059ENSPPAG00000034074LSM310097.059Pan_paniscus
ENSDARG00000089663lsm310097.059ENSPPRG00000012912-10097.059Panthera_pardus
ENSDARG00000089663lsm310096.078ENSPPRG00000020953-10096.078Panthera_pardus
ENSDARG00000089663lsm39990.099ENSPPRG00000010610-8990.099Panthera_pardus
ENSDARG00000089663lsm310097.059ENSPTIG00000003463-10097.059Panthera_tigris_altaica
ENSDARG00000089663lsm310097.059ENSPTIG00000013072-10097.059Panthera_tigris_altaica
ENSDARG00000089663lsm310097.059ENSPTRG00000014650LSM310097.059Pan_troglodytes
ENSDARG00000089663lsm310076.471ENSPANG00000032192-10076.471Papio_anubis
ENSDARG00000089663lsm310097.059ENSPANG00000009378LSM310097.059Papio_anubis
ENSDARG00000089663lsm310097.059ENSPKIG00000008037lsm39197.059Paramormyrops_kingsleyae
ENSDARG00000089663lsm310096.078ENSPSIG00000015720LSM310096.078Pelodiscus_sinensis
ENSDARG00000089663lsm39692.857ENSPMGG00000012103lsm39992.857Periophthalmus_magnuspinnatus
ENSDARG00000089663lsm310080.392ENSPEMG00000020213-10080.392Peromyscus_maniculatus_bairdii
ENSDARG00000089663lsm310097.059ENSPEMG00000015797Lsm310097.059Peromyscus_maniculatus_bairdii
ENSDARG00000089663lsm310096.078ENSPFOG00000008372lsm310096.078Poecilia_formosa
ENSDARG00000089663lsm310096.078ENSPLAG00000000563lsm310096.078Poecilia_latipinna
ENSDARG00000089663lsm310096.078ENSPMEG00000022052lsm310096.078Poecilia_mexicana
ENSDARG00000089663lsm310096.078ENSPREG00000022485lsm310096.078Poecilia_reticulata
ENSDARG00000089663lsm310097.059ENSPPYG00000013402LSM310097.059Pongo_abelii
ENSDARG00000089663lsm310097.059ENSPCAG00000017077LSM310097.059Procavia_capensis
ENSDARG00000089663lsm310096.078ENSPCOG00000016217-10096.078Propithecus_coquereli
ENSDARG00000089663lsm39475.000ENSPCOG00000014435-9875.000Propithecus_coquereli
ENSDARG00000089663lsm310097.059ENSPVAG00000016795LSM310097.059Pteropus_vampyrus
ENSDARG00000089663lsm310096.078ENSPNYG00000009552lsm37396.078Pundamilia_nyererei
ENSDARG00000089663lsm310098.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSDARG00000089663lsm310097.059ENSRNOG00000008733Lsm310097.059Rattus_norvegicus
ENSDARG00000089663lsm310081.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSDARG00000089663lsm310097.059ENSRBIG00000034399LSM310097.059Rhinopithecus_bieti
ENSDARG00000089663lsm310082.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSDARG00000089663lsm310086.275ENSRROG00000044047-10086.275Rhinopithecus_roxellana
ENSDARG00000089663lsm310097.059ENSRROG00000033276-10097.059Rhinopithecus_roxellana
ENSDARG00000089663lsm310079.412ENSRROG00000044056-10079.412Rhinopithecus_roxellana
ENSDARG00000089663lsm310097.059ENSSBOG00000024310LSM310097.059Saimiri_boliviensis_boliviensis
ENSDARG00000089663lsm310098.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSDARG00000089663lsm310096.078ENSSMAG00000001818lsm310096.078Scophthalmus_maximus
ENSDARG00000089663lsm310096.078ENSSDUG00000006040lsm310096.078Seriola_dumerili
ENSDARG00000089663lsm310096.078ENSSLDG00000006399lsm310096.078Seriola_lalandi_dorsalis
ENSDARG00000089663lsm35798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSDARG00000089663lsm39398.947ENSSPUG00000017047-9998.947Sphenodon_punctatus
ENSDARG00000089663lsm310086.275ENSSPUG00000005394LSM310086.275Sphenodon_punctatus
ENSDARG00000089663lsm310084.314ENSSPAG00000000934lsm310084.314Stegastes_partitus
ENSDARG00000089663lsm310097.059ENSSSCG00000011601LSM310097.059Sus_scrofa
ENSDARG00000089663lsm39574.227ENSSSCG00000023718-9974.227Sus_scrofa
ENSDARG00000089663lsm310096.078ENSTGUG00000008327LSM310096.078Taeniopygia_guttata
ENSDARG00000089663lsm310095.098ENSTRUG00000023175lsm310095.098Takifugu_rubripes
ENSDARG00000089663lsm310095.098ENSTNIG00000005589lsm310095.098Tetraodon_nigroviridis
ENSDARG00000089663lsm310087.255ENSTBEG00000001050-9987.255Tupaia_belangeri
ENSDARG00000089663lsm310097.059ENSTTRG00000011197LSM310097.059Tursiops_truncatus
ENSDARG00000089663lsm310097.059ENSUAMG00000017250-10097.059Ursus_americanus
ENSDARG00000089663lsm310097.059ENSUMAG00000015905LSM310097.059Ursus_maritimus
ENSDARG00000089663lsm39398.947ENSVPAG00000010709LSM310098.947Vicugna_pacos
ENSDARG00000089663lsm310088.235ENSVVUG00000024228-10088.235Vulpes_vulpes
ENSDARG00000089663lsm310093.137ENSVVUG00000007332-9193.137Vulpes_vulpes
ENSDARG00000089663lsm310092.157ENSVVUG00000005684-10092.157Vulpes_vulpes
ENSDARG00000089663lsm310092.157ENSVVUG00000006481-10092.157Vulpes_vulpes
ENSDARG00000089663lsm310093.137ENSVVUG00000029294-10093.137Vulpes_vulpes
ENSDARG00000089663lsm310098.039ENSXETG00000011534lsm310098.039Xenopus_tropicalis
ENSDARG00000089663lsm310096.078ENSXCOG00000017432LSM310096.078Xiphophorus_couchianus
ENSDARG00000089663lsm310096.078ENSXMAG00000009151lsm310096.078Xiphophorus_maculatus

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