EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000089715 (Gene tree)
Gene ID: 103910994
Gene Symbol: si:cabz01054394.7
Alias: -
Full Name: si:cabz01054394.7
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7465 bases
Position: chr4:72612792-72620256
Accession: ZDB-GENE-161017-111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	1	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	2	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	3	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	4	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	5	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	6	7
ENSDARP00000097031	zf-C2H2	PF00096.26	2e-48	7	7
ENSDARP00000097031	zf-met	PF12874.7	1.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000106253	-	1484	XM_009300984	ENSDARP00000097031	353 (aa)	XP_009299259	E7F8S6

Gene Model

Click here to download ENSDARG00000089715's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000089715's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000089715	si:cabz01054394.7	96	46.354	ENSDARG00000094558	si:dkeyp-53e4.1	99	51.795
ENSDARG00000089715	si:cabz01054394.7	96	45.946	ENSDARG00000102008	si:dkey-72l17.6	99	45.946
ENSDARG00000089715	si:cabz01054394.7	99	52.577	ENSDARG00000101327	znf1076	99	52.577
ENSDARG00000089715	si:cabz01054394.7	99	45.643	ENSDARG00000089598	si:cabz01054396.2	100	54.651
ENSDARG00000089715	si:cabz01054394.7	94	45.278	ENSDARG00000074365	zgc:171901	100	56.098
ENSDARG00000089715	si:cabz01054394.7	99	52.577	ENSDARG00000099736	CABZ01075078.1	99	52.577
ENSDARG00000089715	si:cabz01054394.7	96	51.795	ENSDARG00000103636	zgc:173702	99	51.795
ENSDARG00000089715	si:cabz01054394.7	99	48.905	ENSDARG00000098430	znf1078	99	48.905
ENSDARG00000089715	si:cabz01054394.7	95	51.613	ENSDARG00000096828	si:ch73-144d13.7	98	51.613
ENSDARG00000089715	si:cabz01054394.7	95	50.000	ENSDARG00000113808	si:dkeyp-82b4.6	100	50.000
ENSDARG00000089715	si:cabz01054394.7	99	48.026	ENSDARG00000101365	si:cabz01021430.2	99	48.026
ENSDARG00000089715	si:cabz01054394.7	96	47.500	ENSDARG00000096041	si:ch211-162i8.2	99	50.000
ENSDARG00000089715	si:cabz01054394.7	94	43.094	ENSDARG00000105137	zgc:173705	99	43.094
ENSDARG00000089715	si:cabz01054394.7	96	52.632	ENSDARG00000074298	znf1015	100	58.120
ENSDARG00000089715	si:cabz01054394.7	96	45.509	ENSDARG00000098087	si:dkey-30f3.2	99	45.509
ENSDARG00000089715	si:cabz01054394.7	96	46.296	ENSDARG00000090160	zgc:173709	99	50.510
ENSDARG00000089715	si:cabz01054394.7	96	51.020	ENSDARG00000103471	si:dkey-199m13.4	99	51.364
ENSDARG00000089715	si:cabz01054394.7	94	44.578	ENSDARG00000110658	zgc:174696	99	44.578
ENSDARG00000089715	si:cabz01054394.7	94	43.544	ENSDARG00000112103	si:dkey-16p19.1	99	43.544
ENSDARG00000089715	si:cabz01054394.7	99	53.333	ENSDARG00000114947	BX465848.1	99	53.333
ENSDARG00000089715	si:cabz01054394.7	94	49.407	ENSDARG00000101137	znf999	100	45.283
ENSDARG00000089715	si:cabz01054394.7	98	50.554	ENSDARG00000091393	si:ch211-161m3.6	99	50.554
ENSDARG00000089715	si:cabz01054394.7	99	53.333	ENSDARG00000098196	znf1077	99	53.333
ENSDARG00000089715	si:cabz01054394.7	96	48.148	ENSDARG00000100842	si:ch211-223a21.4	99	49.545
ENSDARG00000089715	si:cabz01054394.7	94	53.448	ENSDARG00000100001	znf1096	99	43.923
ENSDARG00000089715	si:cabz01054394.7	93	44.545	ENSDARG00000102561	AL645691.1	97	44.545
ENSDARG00000089715	si:cabz01054394.7	94	43.923	ENSDARG00000109381	CU457778.2	99	43.923
ENSDARG00000089715	si:cabz01054394.7	94	45.210	ENSDARG00000102791	zgc:174704	99	45.210
ENSDARG00000089715	si:cabz01054394.7	93	49.444	ENSDARG00000110229	zgc:173702	99	52.308
ENSDARG00000089715	si:cabz01054394.7	94	43.646	ENSDARG00000096189	si:dkey-54j5.2	99	43.646
ENSDARG00000089715	si:cabz01054394.7	98	49.772	ENSDARG00000096856	znf1012	100	49.772
ENSDARG00000089715	si:cabz01054394.7	94	43.646	ENSDARG00000115450	CABZ01012382.1	99	43.646
ENSDARG00000089715	si:cabz01054394.7	94	45.045	ENSDARG00000103721	si:dkey-122c11.7	99	45.045
ENSDARG00000089715	si:cabz01054394.7	94	43.923	ENSDARG00000112725	si:dkey-22h13.2	99	43.923
ENSDARG00000089715	si:cabz01054394.7	99	45.882	ENSDARG00000100961	zgc:174653	100	52.713
ENSDARG00000089715	si:cabz01054394.7	99	53.886	ENSDARG00000115655	znf1078	99	47.273
ENSDARG00000089715	si:cabz01054394.7	99	47.191	ENSDARG00000090942	CABZ01054394.1	98	47.191
ENSDARG00000089715	si:cabz01054394.7	92	46.130	ENSDARG00000075417	zgc:175107	97	46.130
ENSDARG00000089715	si:cabz01054394.7	96	57.143	ENSDARG00000104887	znf1105	96	51.103
ENSDARG00000089715	si:cabz01054394.7	99	57.949	ENSDARG00000116216	znf1046	94	57.949

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000089715	si:cabz01054394.7	79	51.042	ENSATEG00000023773	-	52	51.042	Anabas_testudineus
ENSDARG00000089715	si:cabz01054394.7	88	39.456	ENSACLG00000026130	-	51	39.726	Astatotilapia_calliptera
ENSDARG00000089715	si:cabz01054394.7	72	44.512	ENSCSEG00000005456	si:ch211-79k12.2	55	39.779	Cynoglossus_semilaevis
ENSDARG00000089715	si:cabz01054394.7	80	39.286	ENSCSEG00000011817	-	60	39.286	Cynoglossus_semilaevis
ENSDARG00000089715	si:cabz01054394.7	74	53.333	ENSGMOG00000020024	-	100	53.333	Gadus_morhua
ENSDARG00000089715	si:cabz01054394.7	94	35.000	ENSKMAG00000011441	-	85	35.000	Kryptolebias_marmoratus
ENSDARG00000089715	si:cabz01054394.7	80	51.111	ENSMAMG00000020468	-	51	51.111	Mastacembelus_armatus
ENSDARG00000089715	si:cabz01054394.7	88	39.456	ENSMZEG00005006464	-	51	39.726	Maylandia_zebra
ENSDARG00000089715	si:cabz01054394.7	73	44.915	ENSNBRG00000019881	-	60	44.915	Neolamprologus_brichardi
ENSDARG00000089715	si:cabz01054394.7	94	46.193	ENSORLG00000012434	znf1064	77	46.193	Oryzias_latipes
ENSDARG00000089715	si:cabz01054394.7	83	48.649	ENSORLG00015013828	-	67	39.416	Oryzias_latipes_hsok
ENSDARG00000089715	si:cabz01054394.7	77	49.438	ENSOMEG00000005928	-	61	41.830	Oryzias_melastigma
ENSDARG00000089715	si:cabz01054394.7	77	45.729	ENSPFOG00000003366	-	52	45.714	Poecilia_formosa
ENSDARG00000089715	si:cabz01054394.7	77	39.623	ENSPLAG00000010547	-	72	39.623	Poecilia_latipinna
ENSDARG00000089715	si:cabz01054394.7	94	37.943	ENSPLAG00000023537	-	93	37.943	Poecilia_latipinna
ENSDARG00000089715	si:cabz01054394.7	90	56.410	ENSPREG00000003816	-	77	56.410	Poecilia_reticulata
ENSDARG00000089715	si:cabz01054394.7	72	53.659	ENSSMAG00000002598	-	52	44.366	Scophthalmus_maximus
ENSDARG00000089715	si:cabz01054394.7	83	50.000	ENSSPAG00000017203	-	64	50.000	Stegastes_partitus
ENSDARG00000089715	si:cabz01054394.7	65	62.500	ENSTRUG00000022969	-	67	62.500	Takifugu_rubripes
ENSDARG00000089715	si:cabz01054394.7	74	50.610	ENSXETG00000031310	-	55	50.610	Xenopus_tropicalis
ENSDARG00000089715	si:cabz01054394.7	78	52.941	ENSXCOG00000003499	-	57	52.941	Xiphophorus_couchianus
ENSDARG00000089715	si:cabz01054394.7	65	41.899	ENSXMAG00000024816	-	50	41.899	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function