EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000089954 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-189e2.3
Alias: fj98d01|wu:fj98d01
Full Name: si:ch211-189e2.3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 37858 bases
Position: chr17:6603691-6641548
Accession: ZDB-GENE-030131-6454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	1	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	2	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	3	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	4	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	5	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	6	7
ENSDARP00000144434	TUDOR	PF00567.24	2e-140	7	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	1	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	2	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	3	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	4	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	5	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	6	7
ENSDARP00000127821	TUDOR	PF00567.24	2.4e-140	7	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	1	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	2	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	3	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	4	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	5	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	6	7
ENSDARP00000150080	TUDOR	PF00567.24	2.6e-140	7	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	1	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	2	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	3	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	4	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	5	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	6	7
ENSDARP00000155558	TUDOR	PF00567.24	2.6e-140	7	7

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000175024	-	6007	-	ENSDARP00000144434	1780 (aa)	-	A0A286YB87
ENSDART00000180384	-	6294	-	ENSDARP00000150080	1817 (aa)	-	A0A2R8QE00
ENSDART00000154540	-	5764	XM_021467282	ENSDARP00000127821	1814 (aa)	XP_021322957	X1WC78
ENSDART00000184486	-	6281	-	ENSDARP00000155558	1817 (aa)	-	A0A2R8QE00

Gene Model

Click here to download ENSDARG00000089954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000089954's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000089954	si:ch211-189e2.3	92	39.655	ENSDARG00000070052	tdrd6	79	39.655

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000089954	si:ch211-189e2.3	94	40.141	ENSAPOG00000020893	-	98	40.141	Acanthochromis_polyacanthus
ENSDARG00000089954	si:ch211-189e2.3	93	30.028	ENSAPOG00000023805	tdrd6	87	30.028	Acanthochromis_polyacanthus
ENSDARG00000089954	si:ch211-189e2.3	92	35.322	ENSAMEG00000001687	TDRD6	80	35.322	Ailuropoda_melanoleuca
ENSDARG00000089954	si:ch211-189e2.3	80	34.641	ENSACIG00000012633	-	98	34.641	Amphilophus_citrinellus
ENSDARG00000089954	si:ch211-189e2.3	92	49.738	ENSACIG00000009194	-	99	49.738	Amphilophus_citrinellus
ENSDARG00000089954	si:ch211-189e2.3	94	37.793	ENSAOCG00000017073	-	99	37.793	Amphiprion_ocellaris
ENSDARG00000089954	si:ch211-189e2.3	98	30.096	ENSAOCG00000013365	tdrd6	77	30.108	Amphiprion_ocellaris
ENSDARG00000089954	si:ch211-189e2.3	94	38.462	ENSAPEG00000011090	-	98	38.462	Amphiprion_percula
ENSDARG00000089954	si:ch211-189e2.3	97	30.149	ENSAPEG00000015328	tdrd6	90	30.161	Amphiprion_percula
ENSDARG00000089954	si:ch211-189e2.3	93	32.214	ENSATEG00000001389	si:ch211-189e2.3	99	31.706	Anabas_testudineus
ENSDARG00000089954	si:ch211-189e2.3	90	45.455	ENSATEG00000016586	tdrd6	79	45.455	Anabas_testudineus
ENSDARG00000089954	si:ch211-189e2.3	97	34.529	ENSANAG00000004725	TDRD6	87	34.529	Aotus_nancymaae
ENSDARG00000089954	si:ch211-189e2.3	93	32.381	ENSACLG00000003092	-	99	32.245	Astatotilapia_calliptera
ENSDARG00000089954	si:ch211-189e2.3	94	30.517	ENSACLG00000007717	-	85	30.466	Astatotilapia_calliptera
ENSDARG00000089954	si:ch211-189e2.3	92	44.025	ENSAMXG00000032110	si:ch211-189e2.3	99	44.025	Astyanax_mexicanus
ENSDARG00000089954	si:ch211-189e2.3	94	39.191	ENSAMXG00000010029	tdrd6	74	39.347	Astyanax_mexicanus
ENSDARG00000089954	si:ch211-189e2.3	97	32.943	ENSCJAG00000012035	TDRD6	87	33.792	Callithrix_jacchus
ENSDARG00000089954	si:ch211-189e2.3	92	33.172	ENSCAFG00000002036	TDRD6	81	33.172	Canis_familiaris
ENSDARG00000089954	si:ch211-189e2.3	92	33.172	ENSCAFG00020012649	TDRD6	80	33.172	Canis_lupus_dingo
ENSDARG00000089954	si:ch211-189e2.3	94	32.166	ENSTSYG00000007971	TDRD6	83	32.166	Carlito_syrichta
ENSDARG00000089954	si:ch211-189e2.3	92	34.222	ENSCCAG00000027454	TDRD6	82	34.222	Cebus_capucinus
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSCATG00000023914	TDRD6	87	34.598	Cercocebus_atys
ENSDARG00000089954	si:ch211-189e2.3	83	31.504	ENSCLAG00000009187	TDRD6	79	31.504	Chinchilla_lanigera
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSCSAG00000012578	TDRD6	86	34.598	Chlorocebus_sabaeus
ENSDARG00000089954	si:ch211-189e2.3	81	40.394	ENSCHOG00000000169	TDRD6	71	34.081	Choloepus_hoffmanni
ENSDARG00000089954	si:ch211-189e2.3	79	32.414	ENSCPBG00000021664	TDRD6	69	32.414	Chrysemys_picta_bellii
ENSDARG00000089954	si:ch211-189e2.3	97	34.000	ENSCANG00000030562	TDRD6	87	34.000	Colobus_angolensis_palliatus
ENSDARG00000089954	si:ch211-189e2.3	92	43.069	ENSCSEG00000003495	-	98	43.627	Cynoglossus_semilaevis
ENSDARG00000089954	si:ch211-189e2.3	52	50.588	ENSCVAG00000001528	-	91	50.588	Cyprinodon_variegatus
ENSDARG00000089954	si:ch211-189e2.3	85	34.452	ENSDORG00000023218	Tdrd6	82	32.779	Dipodomys_ordii
ENSDARG00000089954	si:ch211-189e2.3	88	33.850	ENSETEG00000015260	TDRD6	75	33.850	Echinops_telfairi
ENSDARG00000089954	si:ch211-189e2.3	97	30.422	ENSECAG00000024889	TDRD6	82	30.448	Equus_caballus
ENSDARG00000089954	si:ch211-189e2.3	95	31.295	ENSELUG00000010350	tdrd6	77	31.295	Esox_lucius
ENSDARG00000089954	si:ch211-189e2.3	93	40.820	ENSELUG00000018873	-	99	40.820	Esox_lucius
ENSDARG00000089954	si:ch211-189e2.3	97	30.980	ENSFCAG00000023001	TDRD6	85	30.980	Felis_catus
ENSDARG00000089954	si:ch211-189e2.3	92	33.023	ENSFALG00000001522	TDRD6	77	33.256	Ficedula_albicollis
ENSDARG00000089954	si:ch211-189e2.3	88	47.917	ENSFDAG00000005622	TDRD6	77	32.203	Fukomys_damarensis
ENSDARG00000089954	si:ch211-189e2.3	91	38.660	ENSFHEG00000022915	tdrd6	74	38.660	Fundulus_heteroclitus
ENSDARG00000089954	si:ch211-189e2.3	91	44.812	ENSGMOG00000005132	tdrd6	97	34.008	Gadus_morhua
ENSDARG00000089954	si:ch211-189e2.3	84	32.701	ENSGALG00000044279	-	67	30.508	Gallus_gallus
ENSDARG00000089954	si:ch211-189e2.3	92	37.762	ENSGAFG00000009328	tdrd6	77	37.762	Gambusia_affinis
ENSDARG00000089954	si:ch211-189e2.3	92	35.253	ENSGACG00000004820	tdrd6	92	35.253	Gasterosteus_aculeatus
ENSDARG00000089954	si:ch211-189e2.3	92	32.258	ENSGAGG00000019966	TDRD6	83	32.258	Gopherus_agassizii
ENSDARG00000089954	si:ch211-189e2.3	97	32.157	ENSGGOG00000012971	TDRD6	87	32.157	Gorilla_gorilla
ENSDARG00000089954	si:ch211-189e2.3	94	30.667	ENSHBUG00000012579	tdrd6	80	30.671	Haplochromis_burtoni
ENSDARG00000089954	si:ch211-189e2.3	93	32.517	ENSHBUG00000000351	-	99	32.517	Haplochromis_burtoni
ENSDARG00000089954	si:ch211-189e2.3	92	42.857	ENSHCOG00000017328	-	100	42.857	Hippocampus_comes
ENSDARG00000089954	si:ch211-189e2.3	91	42.117	ENSHCOG00000019950	tdrd6	90	42.117	Hippocampus_comes
ENSDARG00000089954	si:ch211-189e2.3	95	31.834	ENSIPUG00000023805	tdrd6	79	31.834	Ictalurus_punctatus
ENSDARG00000089954	si:ch211-189e2.3	92	34.450	ENSSTOG00000028193	TDRD6	81	34.450	Ictidomys_tridecemlineatus
ENSDARG00000089954	si:ch211-189e2.3	73	37.398	ENSKMAG00000003969	-	88	37.324	Kryptolebias_marmoratus
ENSDARG00000089954	si:ch211-189e2.3	92	45.550	ENSKMAG00000015790	-	97	45.550	Kryptolebias_marmoratus
ENSDARG00000089954	si:ch211-189e2.3	95	37.500	ENSLBEG00000004565	-	100	37.500	Labrus_bergylta
ENSDARG00000089954	si:ch211-189e2.3	94	30.778	ENSLBEG00000022955	tdrd6	85	30.778	Labrus_bergylta
ENSDARG00000089954	si:ch211-189e2.3	90	40.751	ENSLOCG00000016482	tdrd6	99	40.751	Lepisosteus_oculatus
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSMFAG00000002656	TDRD6	87	34.598	Macaca_fascicularis
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSMMUG00000019252	TDRD6	87	34.598	Macaca_mulatta
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSMNEG00000039397	TDRD6	87	34.598	Macaca_nemestrina
ENSDARG00000089954	si:ch211-189e2.3	89	37.793	ENSMLEG00000039418	TDRD6	84	31.827	Mandrillus_leucophaeus
ENSDARG00000089954	si:ch211-189e2.3	92	47.644	ENSMAMG00000000227	-	99	47.644	Mastacembelus_armatus
ENSDARG00000089954	si:ch211-189e2.3	93	34.195	ENSMAMG00000007725	tdrd6	82	34.195	Mastacembelus_armatus
ENSDARG00000089954	si:ch211-189e2.3	94	30.517	ENSMZEG00005003573	tdrd6	79	30.522	Maylandia_zebra
ENSDARG00000089954	si:ch211-189e2.3	93	32.381	ENSMZEG00005012754	-	99	32.381	Maylandia_zebra
ENSDARG00000089954	si:ch211-189e2.3	77	31.681	ENSMGAG00000014281	-	71	31.681	Meleagris_gallopavo
ENSDARG00000089954	si:ch211-189e2.3	78	37.452	ENSMICG00000030777	TDRD6	83	31.631	Microcebus_murinus
ENSDARG00000089954	si:ch211-189e2.3	92	39.000	ENSMMOG00000015651	tdrd6	78	39.000	Mola_mola
ENSDARG00000089954	si:ch211-189e2.3	94	35.698	ENSMODG00000018889	TDRD6	82	30.000	Monodelphis_domestica
ENSDARG00000089954	si:ch211-189e2.3	92	30.891	ENSMALG00000019679	tdrd6	78	30.891	Monopterus_albus
ENSDARG00000089954	si:ch211-189e2.3	85	47.150	ENSMALG00000019184	-	92	47.150	Monopterus_albus
ENSDARG00000089954	si:ch211-189e2.3	94	35.189	ENSMUSG00000040140	Tdrd6	74	35.189	Mus_musculus
ENSDARG00000089954	si:ch211-189e2.3	91	35.337	ENSMPUG00000012444	TDRD6	83	35.337	Mustela_putorius_furo
ENSDARG00000089954	si:ch211-189e2.3	92	33.996	ENSMLUG00000015316	TDRD6	81	32.657	Myotis_lucifugus
ENSDARG00000089954	si:ch211-189e2.3	92	32.854	ENSNGAG00000024357	Tdrd6	81	32.854	Nannospalax_galili
ENSDARG00000089954	si:ch211-189e2.3	94	31.407	ENSNBRG00000018258	tdrd6	90	31.407	Neolamprologus_brichardi
ENSDARG00000089954	si:ch211-189e2.3	88	46.774	ENSNBRG00000007041	-	99	46.774	Neolamprologus_brichardi
ENSDARG00000089954	si:ch211-189e2.3	93	35.938	ENSMEUG00000014304	TDRD6	77	35.938	Notamacropus_eugenii
ENSDARG00000089954	si:ch211-189e2.3	92	30.888	ENSONIG00000001218	tdrd6	100	30.835	Oreochromis_niloticus
ENSDARG00000089954	si:ch211-189e2.3	95	30.049	ENSOANG00000008274	-	80	31.373	Ornithorhynchus_anatinus
ENSDARG00000089954	si:ch211-189e2.3	92	40.107	ENSORLG00000015951	amh	82	40.107	Oryzias_latipes
ENSDARG00000089954	si:ch211-189e2.3	92	40.449	ENSORLG00020005897	amh	78	41.667	Oryzias_latipes_hni
ENSDARG00000089954	si:ch211-189e2.3	92	42.778	ENSORLG00015001382	amh	82	42.778	Oryzias_latipes_hsok
ENSDARG00000089954	si:ch211-189e2.3	92	42.991	ENSOMEG00000014481	tdrd6	77	42.991	Oryzias_melastigma
ENSDARG00000089954	si:ch211-189e2.3	92	34.967	ENSOGAG00000000404	TDRD6	83	35.412	Otolemur_garnettii
ENSDARG00000089954	si:ch211-189e2.3	56	31.400	ENSPPAG00000013878	-	75	31.400	Pan_paniscus
ENSDARG00000089954	si:ch211-189e2.3	97	31.818	ENSPPRG00000007625	TDRD6	85	31.818	Panthera_pardus
ENSDARG00000089954	si:ch211-189e2.3	84	32.164	ENSPTIG00000013853	TDRD6	83	32.164	Panthera_tigris_altaica
ENSDARG00000089954	si:ch211-189e2.3	94	34.375	ENSPTRG00000018237	TDRD6	87	34.375	Pan_troglodytes
ENSDARG00000089954	si:ch211-189e2.3	97	34.598	ENSPANG00000005761	TDRD6	87	34.598	Papio_anubis
ENSDARG00000089954	si:ch211-189e2.3	95	37.553	ENSPKIG00000012265	tdrd6	85	37.553	Paramormyrops_kingsleyae
ENSDARG00000089954	si:ch211-189e2.3	78	30.114	ENSPSIG00000000397	-	97	30.114	Pelodiscus_sinensis
ENSDARG00000089954	si:ch211-189e2.3	92	30.461	ENSPSIG00000017275	-	57	30.461	Pelodiscus_sinensis
ENSDARG00000089954	si:ch211-189e2.3	93	35.637	ENSPMGG00000014626	tdrd6	99	35.637	Periophthalmus_magnuspinnatus
ENSDARG00000089954	si:ch211-189e2.3	86	30.601	ENSPMAG00000008166	-	97	30.601	Petromyzon_marinus
ENSDARG00000089954	si:ch211-189e2.3	91	39.386	ENSPFOG00000012487	tdrd6	99	39.386	Poecilia_formosa
ENSDARG00000089954	si:ch211-189e2.3	92	36.986	ENSPLAG00000020472	tdrd6	75	36.986	Poecilia_latipinna
ENSDARG00000089954	si:ch211-189e2.3	92	36.902	ENSPMEG00000000075	tdrd6	75	36.902	Poecilia_mexicana
ENSDARG00000089954	si:ch211-189e2.3	92	36.281	ENSPREG00000018829	tdrd6	76	36.281	Poecilia_reticulata
ENSDARG00000089954	si:ch211-189e2.3	83	35.065	ENSPCAG00000012381	TDRD6	66	35.065	Procavia_capensis
ENSDARG00000089954	si:ch211-189e2.3	92	35.056	ENSPCOG00000011534	TDRD6	77	35.056	Propithecus_coquereli
ENSDARG00000089954	si:ch211-189e2.3	93	45.876	ENSPNYG00000008466	-	99	45.876	Pundamilia_nyererei
ENSDARG00000089954	si:ch211-189e2.3	94	34.459	ENSPNYG00000021847	tdrd6	89	34.708	Pundamilia_nyererei
ENSDARG00000089954	si:ch211-189e2.3	98	45.344	ENSPNAG00000000359	si:ch211-189e2.3	99	45.344	Pygocentrus_nattereri
ENSDARG00000089954	si:ch211-189e2.3	94	37.984	ENSPNAG00000008860	tdrd6	89	31.042	Pygocentrus_nattereri
ENSDARG00000089954	si:ch211-189e2.3	97	34.821	ENSRBIG00000030252	TDRD6	85	34.821	Rhinopithecus_bieti
ENSDARG00000089954	si:ch211-189e2.3	97	34.821	ENSRROG00000043964	TDRD6	87	32.024	Rhinopithecus_roxellana
ENSDARG00000089954	si:ch211-189e2.3	92	33.778	ENSSBOG00000031889	TDRD6	82	33.778	Saimiri_boliviensis_boliviensis
ENSDARG00000089954	si:ch211-189e2.3	91	49.771	ENSSFOG00015014356	tdrd6	77	41.505	Scleropages_formosus
ENSDARG00000089954	si:ch211-189e2.3	87	36.073	ENSSMAG00000014450	-	98	36.073	Scophthalmus_maximus
ENSDARG00000089954	si:ch211-189e2.3	92	36.468	ENSSDUG00000006559	tdrd6	70	36.468	Seriola_dumerili
ENSDARG00000089954	si:ch211-189e2.3	92	36.173	ENSSDUG00000007597	-	98	35.874	Seriola_dumerili
ENSDARG00000089954	si:ch211-189e2.3	92	35.833	ENSSLDG00000002178	-	99	36.090	Seriola_lalandi_dorsalis
ENSDARG00000089954	si:ch211-189e2.3	92	37.071	ENSSLDG00000004470	tdrd6	72	37.071	Seriola_lalandi_dorsalis
ENSDARG00000089954	si:ch211-189e2.3	98	34.236	ENSSPAG00000013194	tdrd6	95	34.236	Stegastes_partitus
ENSDARG00000089954	si:ch211-189e2.3	92	32.767	ENSTGUG00000013234	TDRD6	100	32.767	Taeniopygia_guttata
ENSDARG00000089954	si:ch211-189e2.3	72	48.947	ENSTRUG00000006534	-	95	48.947	Takifugu_rubripes
ENSDARG00000089954	si:ch211-189e2.3	54	36.681	ENSTRUG00000023197	-	94	36.681	Takifugu_rubripes
ENSDARG00000089954	si:ch211-189e2.3	79	47.959	ENSTNIG00000019317	-	87	47.959	Tetraodon_nigroviridis
ENSDARG00000089954	si:ch211-189e2.3	82	37.456	ENSTTRG00000008440	TDRD6	78	37.456	Tursiops_truncatus
ENSDARG00000089954	si:ch211-189e2.3	87	34.368	ENSUAMG00000014941	TDRD6	81	34.368	Ursus_americanus
ENSDARG00000089954	si:ch211-189e2.3	75	34.368	ENSUMAG00000005127	TDRD6	73	34.368	Ursus_maritimus
ENSDARG00000089954	si:ch211-189e2.3	90	34.753	ENSVVUG00000029302	TDRD6	84	32.192	Vulpes_vulpes
ENSDARG00000089954	si:ch211-189e2.3	92	33.416	ENSXETG00000016255	tdrd6	100	33.416	Xenopus_tropicalis
ENSDARG00000089954	si:ch211-189e2.3	92	30.524	ENSXCOG00000008476	tdrd6	93	30.524	Xiphophorus_couchianus
ENSDARG00000089954	si:ch211-189e2.3	92	36.301	ENSXMAG00000025787	tdrd6	78	36.301	Xiphophorus_maculatus