EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000090179 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-117c9.1
Alias: -
Full Name: si:ch211-117c9.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 17309 bases
Position: chr23:6926183-6943491
Accession: ZDB-GENE-110411-282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124396	RIO1	PF01163.22	9.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149882	-	944	XM_005174116	ENSDARP00000124396	286 (aa)	XP_005174173	F8W3F0

Gene Model

Click here to download ENSDARG00000090179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000090179's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000090179	si:ch211-117c9.1	91	33.818	ENSDARG00000103666	dapk2b	74	33.818
ENSDARG00000090179	si:ch211-117c9.1	88	35.606	ENSDARG00000034210	si:dkey-240h12.4	73	35.606
ENSDARG00000090179	si:ch211-117c9.1	91	48.846	ENSDARG00000019345	mark3a	51	48.846
ENSDARG00000090179	si:ch211-117c9.1	88	37.379	ENSDARG00000044436	rps6ka4	62	37.379
ENSDARG00000090179	si:ch211-117c9.1	88	36.187	ENSDARG00000017994	tssk6	95	36.187
ENSDARG00000090179	si:ch211-117c9.1	88	35.338	ENSDARG00000074447	dapk3	58	35.338
ENSDARG00000090179	si:ch211-117c9.1	90	35.338	ENSDARG00000044526	camk1ga	61	35.338
ENSDARG00000090179	si:ch211-117c9.1	88	36.090	ENSDARG00000061096	dapk2a	54	36.090

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000090179	si:ch211-117c9.1	93	72.556	ENSACIG00000017871	-	52	72.556	Amphilophus_citrinellus
ENSDARG00000090179	si:ch211-117c9.1	93	66.165	ENSFALG00000000621	NUAK2	52	66.165	Ficedula_albicollis
ENSDARG00000090179	si:ch211-117c9.1	79	74.890	ENSGMOG00000017452	-	86	74.890	Gadus_morhua
ENSDARG00000090179	si:ch211-117c9.1	93	66.917	ENSMGAG00000002936	NUAK2	58	66.917	Meleagris_gallopavo
ENSDARG00000090179	si:ch211-117c9.1	93	62.366	ENSMODG00000001769	-	76	62.366	Monodelphis_domestica
ENSDARG00000090179	si:ch211-117c9.1	93	66.165	ENSOCUG00000002318	NUAK2	55	66.165	Oryctolagus_cuniculus
ENSDARG00000090179	si:ch211-117c9.1	97	66.426	ENSORLG00020008332	nuak2	51	66.426	Oryzias_latipes_hni
ENSDARG00000090179	si:ch211-117c9.1	93	65.038	ENSTTRG00000006600	NUAK2	59	65.038	Tursiops_truncatus
ENSDARG00000090179	si:ch211-117c9.1	93	66.917	ENSXCOG00000003678	nuak2	100	66.160	Xiphophorus_couchianus