EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000090202 (Gene tree)
Gene ID: 100526814
Gene Symbol: rbm11
Alias: si:dkey-71d15.3
Full Name: RNA binding motif protein 11
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13316 bases
Position: chr21:34976600-34989915
Accession: ZDB-GENE-091204-317
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000144887	RRM_1	PF00076.22	1.3e-11	1	1
ENSDARP00000122066	RRM_1	PF00076.22	2.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000132711	-	393	-	ENSDARP00000114098	116 (aa)	-	F1QMY4
ENSDART00000139635	-	900	XM_003200887	ENSDARP00000122066	186 (aa)	XP_003200935	E9QHV4
ENSDART00000191672	-	3303	-	ENSDARP00000144887	156 (aa)	-	A0A2R8PYB4

Gene Model

Click here to download ENSDARG00000090202's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000090202's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000090202	rbm11	55	53.409	ENSG00000076053	RBM7	72	52.273	Homo_sapiens
ENSDARG00000090202	rbm11	50	50.000	ENSACIG00000021769	-	86	50.000	Amphilophus_citrinellus
ENSDARG00000090202	rbm11	50	48.750	ENSATEG00000000596	-	85	48.750	Anabas_testudineus
ENSDARG00000090202	rbm11	55	52.273	ENSANAG00000031879	-	78	42.149	Aotus_nancymaae
ENSDARG00000090202	rbm11	55	51.136	ENSANAG00000031340	-	79	40.323	Aotus_nancymaae
ENSDARG00000090202	rbm11	83	48.855	ENSAMXG00000032439	rbm11	80	41.848	Astyanax_mexicanus
ENSDARG00000090202	rbm11	71	46.667	ENSCJAG00000011949	-	80	42.975	Callithrix_jacchus
ENSDARG00000090202	rbm11	55	52.273	ENSCAFG00020002518	-	78	45.000	Canis_lupus_dingo
ENSDARG00000090202	rbm11	55	53.409	ENSCATG00000037361	-	62	40.237	Cercocebus_atys
ENSDARG00000090202	rbm11	55	52.809	ENSCHOG00000012747	-	81	41.667	Choloepus_hoffmanni
ENSDARG00000090202	rbm11	73	40.876	ENSCPBG00000009366	-	65	40.876	Chrysemys_picta_bellii
ENSDARG00000090202	rbm11	55	53.409	ENSCANG00000031398	-	55	46.667	Colobus_angolensis_palliatus
ENSDARG00000090202	rbm11	50	52.500	ENSDORG00000000801	Rbm11	56	52.500	Dipodomys_ordii
ENSDARG00000090202	rbm11	50	53.750	ENSEBUG00000009746	rbm7	53	53.750	Eptatretus_burgeri
ENSDARG00000090202	rbm11	56	50.000	ENSEEUG00000015854	-	70	34.574	Erinaceus_europaeus
ENSDARG00000090202	rbm11	87	37.566	ENSELUG00000020964	-	72	37.368	Esox_lucius
ENSDARG00000090202	rbm11	78	39.516	ENSELUG00000017868	rbm7	55	35.664	Esox_lucius
ENSDARG00000090202	rbm11	50	47.500	ENSFHEG00000000845	-	89	47.500	Fundulus_heteroclitus
ENSDARG00000090202	rbm11	55	53.409	ENSGGOG00000009941	-	59	55.696	Gorilla_gorilla
ENSDARG00000090202	rbm11	58	50.000	ENSHGLG00000014428	-	74	50.575	Heterocephalus_glaber_female
ENSDARG00000090202	rbm11	58	50.000	ENSHGLG00100011703	-	74	50.575	Heterocephalus_glaber_male
ENSDARG00000090202	rbm11	54	42.353	ENSHGLG00100008973	-	73	42.353	Heterocephalus_glaber_male
ENSDARG00000090202	rbm11	50	48.750	ENSHCOG00000010866	-	84	48.750	Hippocampus_comes
ENSDARG00000090202	rbm11	55	53.409	ENSMFAG00000000965	-	55	46.667	Macaca_fascicularis
ENSDARG00000090202	rbm11	55	53.409	ENSMMUG00000012270	RBM7	54	43.697	Macaca_mulatta
ENSDARG00000090202	rbm11	55	53.409	ENSMNEG00000005397	-	55	46.667	Macaca_nemestrina
ENSDARG00000090202	rbm11	55	53.409	ENSMLEG00000041953	-	62	37.870	Mandrillus_leucophaeus
ENSDARG00000090202	rbm11	55	51.136	ENSMAUG00000017938	-	57	51.136	Mesocricetus_auratus
ENSDARG00000090202	rbm11	55	51.136	ENSMUSG00000042396	Rbm7	55	51.724	Mus_musculus
ENSDARG00000090202	rbm11	55	53.409	ENSNLEG00000029494	-	56	43.697	Nomascus_leucogenys
ENSDARG00000090202	rbm11	55	52.273	ENSODEG00000010164	-	80	43.220	Octodon_degus
ENSDARG00000090202	rbm11	55	53.409	ENSPPAG00000027572	-	55	46.667	Pan_paniscus
ENSDARG00000090202	rbm11	55	53.409	ENSPTRG00000004305	RBM7	55	46.667	Pan_troglodytes
ENSDARG00000090202	rbm11	55	53.409	ENSPANG00000009431	-	55	46.667	Papio_anubis
ENSDARG00000090202	rbm11	50	43.750	ENSPMGG00000001523	rbm7	89	43.038	Periophthalmus_magnuspinnatus
ENSDARG00000090202	rbm11	74	43.220	ENSPCAG00000008368	-	80	43.220	Procavia_capensis
ENSDARG00000090202	rbm11	55	53.409	ENSRBIG00000044762	-	57	46.667	Rhinopithecus_bieti
ENSDARG00000090202	rbm11	55	53.409	ENSRROG00000032280	-	55	46.667	Rhinopithecus_roxellana
ENSDARG00000090202	rbm11	55	53.409	ENSSBOG00000027830	-	57	46.667	Saimiri_boliviensis_boliviensis
ENSDARG00000090202	rbm11	50	63.750	ENSSFOG00015013138	rbm11	64	62.963	Scleropages_formosus
ENSDARG00000090202	rbm11	76	39.860	ENSSPUG00000011684	RBM11	51	39.860	Sphenodon_punctatus
ENSDARG00000090202	rbm11	50	50.000	ENSSPAG00000019320	rbm7	63	50.000	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component