EuRBPDB

Description

Ensembl ID: ENSDARG00000090337 (Gene tree)
Gene ID: 100002463
Gene Symbol: pprc1
Alias: cb478|sb:cb478|wu:fb72d09|wu:fj86g08
Full Name: peroxisome proliferator-activated receptor gamma%2C coactivator-related 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 13663 bases
Position: chr13:12007904-12021566
Accession: ZDB-GENE-030131-9858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107880	RRM_1	PF00076.22	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000125430	-	4265	XM_001338200	ENSDARP00000107880	1220 (aa)	XP_001338236	E7F4W0

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000090337	pprc1	77	42.056	ENSDARG00000098666	si:dkey-93h22.8	53	44.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000090337	pprc1	81	63.077	ENSAPOG00000001094	si:dkey-93h22.8	51	52.874	Acanthochromis_polyacanthus
ENSDARG00000090337	pprc1	68	75.000	ENSACIG00000022532	pprc1	89	68.072	Amphilophus_citrinellus
ENSDARG00000090337	pprc1	80	62.581	ENSIPUG00000021651	si:dkey-93h22.8	54	62.581	Ictalurus_punctatus
ENSDARG00000090337	pprc1	93	73.718	ENSIPUG00000007999	pprc1	91	73.718	Ictalurus_punctatus
ENSDARG00000090337	pprc1	96	41.725	ENSPREG00000020657	pprc1	76	79.259	Poecilia_reticulata
ENSDARG00000090337	pprc1	64	62.025	ENSPNAG00000023094	si:dkey-93h22.8	67	62.025	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003712	transcription coregulator activity	21873635.	IBA	Function
GO:0003712	transcription coregulator activity	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008134	transcription factor binding	-	IEA	Function
GO:0030374	nuclear receptor transcription coactivator activity	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0051091	positive regulation of DNA-binding transcription factor activity	21873635.	IBA	Process