EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000090788 (Gene tree)
Gene ID: 386806
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor%2C 3' pre-RNA%2C subunit 2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 26376 bases
Position: chr14:41361858-41388233
Accession: ZDB-GENE-031118-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000110939	RRM_1	PF00076.22	2.1e-24	1	1
ENSDARP00000129952	RRM_1	PF00076.22	2.2e-24	1	1
ENSDARP00000106787	RRM_1	PF00076.22	5.1e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169247	-	1681	XM_009291098	ENSDARP00000129952	508 (aa)	XP_009289373	A0A0R4I9I2
ENSDART00000125016	-	1424	-	ENSDARP00000106787	339 (aa)	-	Q7ZUX2
ENSDART00000124532	-	1719	-	ENSDARP00000110939	488 (aa)	-	F1QWP0
ENSDART00000173040	-	856	-	ENSDARP00000142205	177 (aa)	-	A0A140LG27

Gene Model

Click here to download ENSDARG00000090788's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000090788's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000090788	cstf2	93	92.188	ENSG00000101811	CSTF2	86	88.660	Homo_sapiens
ENSDARG00000090788	cstf2	96	98.333	ENSAPOG00000005630	cstf2	95	72.565	Acanthochromis_polyacanthus
ENSDARG00000090788	cstf2	93	92.188	ENSAMEG00000002082	CSTF2	73	98.182	Ailuropoda_melanoleuca
ENSDARG00000090788	cstf2	71	100.000	ENSACIG00000012852	cstf2	76	100.000	Amphilophus_citrinellus
ENSDARG00000090788	cstf2	95	98.333	ENSAOCG00000020905	cstf2	95	73.000	Amphiprion_ocellaris
ENSDARG00000090788	cstf2	95	98.333	ENSAPEG00000006526	cstf2	95	71.769	Amphiprion_percula
ENSDARG00000090788	cstf2	71	100.000	ENSATEG00000018186	cstf2	77	100.000	Anabas_testudineus
ENSDARG00000090788	cstf2	91	97.826	ENSAPLG00000007255	CSTF2	71	88.462	Anas_platyrhynchos
ENSDARG00000090788	cstf2	93	92.188	ENSANAG00000022342	CSTF2	74	98.182	Aotus_nancymaae
ENSDARG00000090788	cstf2	99	89.744	ENSACLG00000000779	cstf2	74	100.000	Astatotilapia_calliptera
ENSDARG00000090788	cstf2	96	85.846	ENSAMXG00000021477	cstf2	95	100.000	Astyanax_mexicanus
ENSDARG00000090788	cstf2	97	92.188	ENSBTAG00000003547	CSTF2	75	98.182	Bos_taurus
ENSDARG00000090788	cstf2	93	92.188	ENSCJAG00000004422	CSTF2	72	98.182	Callithrix_jacchus
ENSDARG00000090788	cstf2	93	92.188	ENSCAFG00000017551	CSTF2	71	98.182	Canis_familiaris
ENSDARG00000090788	cstf2	93	92.188	ENSCAFG00020007619	CSTF2	74	98.182	Canis_lupus_dingo
ENSDARG00000090788	cstf2	97	92.188	ENSCHIG00000016994	CSTF2	75	98.182	Capra_hircus
ENSDARG00000090788	cstf2	93	92.188	ENSTSYG00000006529	CSTF2	72	98.182	Carlito_syrichta
ENSDARG00000090788	cstf2	96	92.188	ENSCPOG00000015255	CSTF2	85	90.385	Cavia_porcellus
ENSDARG00000090788	cstf2	93	92.188	ENSCCAG00000032975	CSTF2	72	98.182	Cebus_capucinus
ENSDARG00000090788	cstf2	97	92.188	ENSCATG00000022835	CSTF2	72	98.182	Cercocebus_atys
ENSDARG00000090788	cstf2	94	92.188	ENSCLAG00000001904	CSTF2	87	88.679	Chinchilla_lanigera
ENSDARG00000090788	cstf2	93	92.188	ENSCSAG00000010360	CSTF2	72	98.182	Chlorocebus_sabaeus
ENSDARG00000090788	cstf2	97	93.750	ENSCPBG00000014293	CSTF2	73	82.000	Chrysemys_picta_bellii
ENSDARG00000090788	cstf2	93	92.188	ENSCANG00000030612	CSTF2	72	98.182	Colobus_angolensis_palliatus
ENSDARG00000090788	cstf2	91	98.305	ENSCGRG00001023023	Cstf2	71	98.182	Cricetulus_griseus_chok1gshd
ENSDARG00000090788	cstf2	91	95.000	ENSCGRG00000003897	Cstf2	74	96.364	Cricetulus_griseus_crigri
ENSDARG00000090788	cstf2	95	100.000	ENSCVAG00000005731	cstf2	66	100.000	Cyprinodon_variegatus
ENSDARG00000090788	cstf2	97	92.188	ENSDORG00000007195	Cstf2	89	88.272	Dipodomys_ordii
ENSDARG00000090788	cstf2	75	89.062	ENSETEG00000004931	CSTF2	62	82.000	Echinops_telfairi
ENSDARG00000090788	cstf2	93	93.750	ENSEASG00005001216	CSTF2	72	98.182	Equus_asinus_asinus
ENSDARG00000090788	cstf2	93	93.750	ENSECAG00000009325	CSTF2	72	98.182	Equus_caballus
ENSDARG00000090788	cstf2	93	92.188	ENSFCAG00000007000	CSTF2	72	98.182	Felis_catus
ENSDARG00000090788	cstf2	83	100.000	ENSFALG00000003859	CSTF2	70	100.000	Ficedula_albicollis
ENSDARG00000090788	cstf2	93	92.188	ENSFDAG00000002416	CSTF2	73	98.182	Fukomys_damarensis
ENSDARG00000090788	cstf2	95	98.305	ENSFHEG00000017065	cstf2	92	70.974	Fundulus_heteroclitus
ENSDARG00000090788	cstf2	72	100.000	ENSGMOG00000005145	cstf2	80	100.000	Gadus_morhua
ENSDARG00000090788	cstf2	96	92.188	ENSGALG00000006760	CSTF2	70	98.182	Gallus_gallus
ENSDARG00000090788	cstf2	68	100.000	ENSGAFG00000020027	cstf2	77	100.000	Gambusia_affinis
ENSDARG00000090788	cstf2	94	90.000	ENSGACG00000017326	cstf2	96	69.336	Gasterosteus_aculeatus
ENSDARG00000090788	cstf2	97	93.750	ENSGAGG00000006037	CSTF2	76	82.000	Gopherus_agassizii
ENSDARG00000090788	cstf2	93	92.188	ENSGGOG00000022267	CSTF2	72	98.182	Gorilla_gorilla
ENSDARG00000090788	cstf2	99	89.744	ENSHBUG00000016183	cstf2	75	100.000	Haplochromis_burtoni
ENSDARG00000090788	cstf2	92	85.246	ENSHGLG00000013455	-	80	87.273	Heterocephalus_glaber_female
ENSDARG00000090788	cstf2	93	92.188	ENSHGLG00000000659	-	88	87.273	Heterocephalus_glaber_female
ENSDARG00000090788	cstf2	92	85.246	ENSHGLG00100015391	-	80	87.273	Heterocephalus_glaber_male
ENSDARG00000090788	cstf2	93	92.188	ENSHGLG00100001130	-	88	87.273	Heterocephalus_glaber_male
ENSDARG00000090788	cstf2	94	100.000	ENSHCOG00000005157	cstf2	78	100.000	Hippocampus_comes
ENSDARG00000090788	cstf2	100	91.781	ENSIPUG00000017839	cstf2	97	84.805	Ictalurus_punctatus
ENSDARG00000090788	cstf2	93	92.188	ENSSTOG00000023445	CSTF2	87	88.679	Ictidomys_tridecemlineatus
ENSDARG00000090788	cstf2	91	98.305	ENSJJAG00000020507	Cstf2	87	88.679	Jaculus_jaculus
ENSDARG00000090788	cstf2	73	85.897	ENSKMAG00000001068	cstf2	95	71.111	Kryptolebias_marmoratus
ENSDARG00000090788	cstf2	97	95.312	ENSLACG00000015927	CSTF2	74	98.182	Latimeria_chalumnae
ENSDARG00000090788	cstf2	99	95.652	ENSLOCG00000015300	cstf2	92	76.181	Lepisosteus_oculatus
ENSDARG00000090788	cstf2	97	92.188	ENSLAFG00000000474	CSTF2	72	98.182	Loxodonta_africana
ENSDARG00000090788	cstf2	93	92.188	ENSMFAG00000043888	CSTF2	72	98.182	Macaca_fascicularis
ENSDARG00000090788	cstf2	93	92.188	ENSMMUG00000013008	CSTF2	72	98.182	Macaca_mulatta
ENSDARG00000090788	cstf2	93	92.188	ENSMNEG00000041824	CSTF2	72	98.182	Macaca_nemestrina
ENSDARG00000090788	cstf2	93	92.188	ENSMLEG00000036870	CSTF2	72	98.182	Mandrillus_leucophaeus
ENSDARG00000090788	cstf2	91	95.833	ENSMAMG00000020364	cstf2	96	70.784	Mastacembelus_armatus
ENSDARG00000090788	cstf2	99	89.744	ENSMZEG00005007200	cstf2	77	100.000	Maylandia_zebra
ENSDARG00000090788	cstf2	83	100.000	ENSMGAG00000004139	CSTF2	63	100.000	Meleagris_gallopavo
ENSDARG00000090788	cstf2	91	98.305	ENSMAUG00000000965	Cstf2	72	98.182	Mesocricetus_auratus
ENSDARG00000090788	cstf2	93	92.188	ENSMICG00000014121	CSTF2	74	98.182	Microcebus_murinus
ENSDARG00000090788	cstf2	91	98.305	ENSMOCG00000008081	Cstf2	71	98.182	Microtus_ochrogaster
ENSDARG00000090788	cstf2	75	98.305	ENSMMOG00000000538	cstf2	63	98.182	Mola_mola
ENSDARG00000090788	cstf2	97	93.750	ENSMODG00000011785	CSTF2	74	98.182	Monodelphis_domestica
ENSDARG00000090788	cstf2	91	98.305	MGP_CAROLIEiJ_G0033383	Cstf2	86	89.241	Mus_caroli
ENSDARG00000090788	cstf2	91	98.305	ENSMUSG00000031256	Cstf2	86	89.241	Mus_musculus
ENSDARG00000090788	cstf2	91	98.305	MGP_PahariEiJ_G0031923	Cstf2	74	98.182	Mus_pahari
ENSDARG00000090788	cstf2	91	98.305	MGP_SPRETEiJ_G0034548	Cstf2	86	89.241	Mus_spretus
ENSDARG00000090788	cstf2	93	92.188	ENSMPUG00000002339	CSTF2	74	98.182	Mustela_putorius_furo
ENSDARG00000090788	cstf2	97	92.188	ENSMLUG00000004598	CSTF2	74	98.182	Myotis_lucifugus
ENSDARG00000090788	cstf2	91	98.305	ENSNGAG00000021985	Cstf2	72	98.182	Nannospalax_galili
ENSDARG00000090788	cstf2	90	97.778	ENSNBRG00000021694	cstf2	79	97.778	Neolamprologus_brichardi
ENSDARG00000090788	cstf2	93	92.188	ENSNLEG00000007510	CSTF2	72	98.182	Nomascus_leucogenys
ENSDARG00000090788	cstf2	97	93.750	ENSMEUG00000011186	-	72	98.182	Notamacropus_eugenii
ENSDARG00000090788	cstf2	88	64.343	ENSMEUG00000014025	-	100	62.475	Notamacropus_eugenii
ENSDARG00000090788	cstf2	97	93.750	ENSMEUG00000007875	-	72	98.182	Notamacropus_eugenii
ENSDARG00000090788	cstf2	81	75.500	ENSOPRG00000003106	CSTF2	80	81.967	Ochotona_princeps
ENSDARG00000090788	cstf2	96	92.188	ENSODEG00000002059	CSTF2	72	98.182	Octodon_degus
ENSDARG00000090788	cstf2	75	100.000	ENSONIG00000002631	cstf2	84	88.235	Oreochromis_niloticus
ENSDARG00000090788	cstf2	83	93.878	ENSOANG00000004208	CSTF2	71	84.000	Ornithorhynchus_anatinus
ENSDARG00000090788	cstf2	93	92.188	ENSOCUG00000010468	CSTF2	71	98.182	Oryctolagus_cuniculus
ENSDARG00000090788	cstf2	94	98.305	ENSORLG00000001380	cstf2	77	98.182	Oryzias_latipes
ENSDARG00000090788	cstf2	94	98.305	ENSORLG00020021917	cstf2	77	98.182	Oryzias_latipes_hni
ENSDARG00000090788	cstf2	94	98.305	ENSORLG00015011996	cstf2	77	98.182	Oryzias_latipes_hsok
ENSDARG00000090788	cstf2	96	96.667	ENSOMEG00000015507	cstf2	77	98.182	Oryzias_melastigma
ENSDARG00000090788	cstf2	94	92.188	ENSOGAG00000011192	CSTF2	72	98.182	Otolemur_garnettii
ENSDARG00000090788	cstf2	97	92.188	ENSOARG00000001022	CSTF2	75	98.182	Ovis_aries
ENSDARG00000090788	cstf2	93	92.188	ENSPPAG00000031804	CSTF2	72	98.182	Pan_paniscus
ENSDARG00000090788	cstf2	93	92.188	ENSPPRG00000022492	CSTF2	72	98.182	Panthera_pardus
ENSDARG00000090788	cstf2	93	90.625	ENSPTIG00000009922	CSTF2	72	96.364	Panthera_tigris_altaica
ENSDARG00000090788	cstf2	93	92.188	ENSPTRG00000022090	CSTF2	72	98.182	Pan_troglodytes
ENSDARG00000090788	cstf2	93	92.188	ENSPANG00000002303	CSTF2	74	98.182	Papio_anubis
ENSDARG00000090788	cstf2	96	90.411	ENSPKIG00000005033	cstf2	96	78.079	Paramormyrops_kingsleyae
ENSDARG00000090788	cstf2	94	100.000	ENSPMGG00000006534	cstf2	77	100.000	Periophthalmus_magnuspinnatus
ENSDARG00000090788	cstf2	91	98.305	ENSPEMG00000019415	Cstf2	72	98.182	Peromyscus_maniculatus_bairdii
ENSDARG00000090788	cstf2	97	93.750	ENSPCIG00000002989	CSTF2	73	98.182	Phascolarctos_cinereus
ENSDARG00000090788	cstf2	69	100.000	ENSPLAG00000011176	cstf2	77	100.000	Poecilia_latipinna
ENSDARG00000090788	cstf2	69	100.000	ENSPMEG00000017743	cstf2	77	100.000	Poecilia_mexicana
ENSDARG00000090788	cstf2	97	76.286	ENSPREG00000011481	cstf2	80	100.000	Poecilia_reticulata
ENSDARG00000090788	cstf2	93	92.188	ENSPPYG00000020541	CSTF2	72	98.182	Pongo_abelii
ENSDARG00000090788	cstf2	93	92.188	ENSPCOG00000027744	CSTF2	72	98.182	Propithecus_coquereli
ENSDARG00000090788	cstf2	81	96.000	ENSPVAG00000008342	CSTF2	55	96.000	Pteropus_vampyrus
ENSDARG00000090788	cstf2	71	89.744	ENSPNYG00000010852	cstf2	93	92.754	Pundamilia_nyererei
ENSDARG00000090788	cstf2	96	98.305	ENSPNAG00000018887	cstf2	97	87.942	Pygocentrus_nattereri
ENSDARG00000090788	cstf2	92	98.305	ENSRNOG00000048025	Cstf2	71	98.182	Rattus_norvegicus
ENSDARG00000090788	cstf2	93	92.188	ENSRBIG00000030745	CSTF2	71	98.182	Rhinopithecus_bieti
ENSDARG00000090788	cstf2	93	92.188	ENSRROG00000045042	CSTF2	72	98.182	Rhinopithecus_roxellana
ENSDARG00000090788	cstf2	93	92.188	ENSSBOG00000021649	CSTF2	74	98.182	Saimiri_boliviensis_boliviensis
ENSDARG00000090788	cstf2	92	97.826	ENSSHAG00000003681	CSTF2	67	97.826	Sarcophilus_harrisii
ENSDARG00000090788	cstf2	92	100.000	ENSSFOG00015006348	cstf2	97	76.541	Scleropages_formosus
ENSDARG00000090788	cstf2	97	71.815	ENSSMAG00000013463	cstf2	77	100.000	Scophthalmus_maximus
ENSDARG00000090788	cstf2	97	92.188	ENSSPUG00000005288	-	65	98.182	Sphenodon_punctatus
ENSDARG00000090788	cstf2	93	92.188	ENSSSCG00000012486	CSTF2	75	98.182	Sus_scrofa
ENSDARG00000090788	cstf2	96	92.188	ENSTGUG00000002253	CSTF2	70	98.182	Taeniopygia_guttata
ENSDARG00000090788	cstf2	91	100.000	ENSTNIG00000016860	cstf2	98	71.346	Tetraodon_nigroviridis
ENSDARG00000090788	cstf2	93	92.188	ENSTTRG00000013556	CSTF2	74	98.182	Tursiops_truncatus
ENSDARG00000090788	cstf2	93	92.188	ENSUAMG00000026605	CSTF2	74	98.182	Ursus_americanus
ENSDARG00000090788	cstf2	93	90.625	ENSUMAG00000012417	CSTF2	95	73.835	Ursus_maritimus
ENSDARG00000090788	cstf2	70	89.062	ENSVPAG00000006466	CSTF2	59	71.257	Vicugna_pacos
ENSDARG00000090788	cstf2	93	92.188	ENSVVUG00000004717	CSTF2	71	98.182	Vulpes_vulpes
ENSDARG00000090788	cstf2	97	92.188	ENSXETG00000009642	cstf2	98	69.819	Xenopus_tropicalis
ENSDARG00000090788	cstf2	94	100.000	ENSXCOG00000016436	cstf2	90	98.387	Xiphophorus_couchianus
ENSDARG00000090788	cstf2	55	100.000	ENSXMAG00000013524	cstf2	79	100.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0031124	mRNA 3'-end processing	-	IEA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process