EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000090836 (Gene tree)
Gene ID: 101882796
Gene Symbol: si:ch211-191d2.2
Alias: -
Full Name: si:ch211-191d2.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9854 bases
Position: chr20:23657860-23667713
Accession: ZDB-GENE-110407-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	1	6
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	2	6
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	3	6
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	4	6
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	5	6
ENSDARP00000155040	zf-C2H2	PF00096.26	2.3e-33	6	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	1	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	2	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	3	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	4	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	5	6
ENSDARP00000124764	zf-C2H2	PF00096.26	2.6e-33	6	6
ENSDARP00000155040	zf-met	PF12874.7	4.2e-07	1	2
ENSDARP00000155040	zf-met	PF12874.7	4.2e-07	2	2
ENSDARP00000124764	zf-met	PF12874.7	4.6e-07	1	2
ENSDARP00000124764	zf-met	PF12874.7	4.6e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149108	-	1677	XM_009294675	ENSDARP00000124764	499 (aa)	XP_009292950	F8W2D9
ENSDART00000192145	-	3575	-	ENSDARP00000155040	495 (aa)	-	A0A2R8QL33

Gene Model

Click here to download ENSDARG00000090836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000090836's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000090836	si:ch211-191d2.2	100	80.808	ENSDARG00000104807	si:ch73-221f6.3	100	80.368
ENSDARG00000090836	si:ch211-191d2.2	99	75.911	ENSDARG00000104783	si:ch73-221f6.4	99	74.494
ENSDARG00000090836	si:ch211-191d2.2	63	44.918	ENSDARG00000091679	FO704858.1	95	45.183
ENSDARG00000090836	si:ch211-191d2.2	100	71.236	ENSDARG00000096528	si:ch73-236c18.9	98	69.112
ENSDARG00000090836	si:ch211-191d2.2	62	45.804	ENSDARG00000103777	znf1001	100	45.745
ENSDARG00000090836	si:ch211-191d2.2	88	42.353	ENSDARG00000105295	LO017784.1	77	79.710
ENSDARG00000090836	si:ch211-191d2.2	100	78.514	ENSDARG00000104904	si:ch73-221f6.1	98	78.112

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000090836	si:ch211-191d2.2	65	46.411	ENSATEG00000008320	-	83	46.411	Anabas_testudineus
ENSDARG00000090836	si:ch211-191d2.2	65	52.970	ENSPNAG00000007266	-	100	48.485	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function