EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000091367 (Gene tree)
Gene ID: 323855
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 53780 bases
Position: chr23:6998633-7052412
Accession: ZDB-GENE-030131-2575
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000105670	PRP1_N	PF06424.12	4.7e-57	1	1
ENSDARP00000145312	PRP1_N	PF06424.12	5e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000192468	-	4840	-	ENSDARP00000145312	974 (aa)	-	A0A2R8PWG5
ENSDART00000127702	-	3213	-	ENSDARP00000105670	944 (aa)	-	Q6NYK7

Gene Model

Click here to download ENSDARG00000091367's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000091367's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000091367	prpf6	99	92.136	ENSG00000101161	PRPF6	100	91.711	Homo_sapiens
ENSDARG00000091367	prpf6	100	94.492	ENSAPOG00000010395	prpf6	100	93.340	Acanthochromis_polyacanthus
ENSDARG00000091367	prpf6	99	91.543	ENSAMEG00000001916	PRPF6	99	91.121	Ailuropoda_melanoleuca
ENSDARG00000091367	prpf6	100	94.915	ENSACIG00000019862	prpf6	100	93.340	Amphilophus_citrinellus
ENSDARG00000091367	prpf6	100	94.597	ENSAOCG00000012988	prpf6	100	93.443	Amphiprion_ocellaris
ENSDARG00000091367	prpf6	99	87.901	ENSAPEG00000008301	prpf6	100	87.753	Amphiprion_percula
ENSDARG00000091367	prpf6	100	94.703	ENSATEG00000005581	prpf6	100	93.340	Anabas_testudineus
ENSDARG00000091367	prpf6	99	92.202	ENSACAG00000006464	PRPF6	99	89.796	Anolis_carolinensis
ENSDARG00000091367	prpf6	99	92.242	ENSANAG00000012661	PRPF6	100	92.815	Aotus_nancymaae
ENSDARG00000091367	prpf6	100	94.386	ENSACLG00000025875	prpf6	100	92.930	Astatotilapia_calliptera
ENSDARG00000091367	prpf6	100	95.767	ENSAMXG00000001929	prpf6	100	94.974	Astyanax_mexicanus
ENSDARG00000091367	prpf6	99	92.880	ENSBTAG00000011656	PRPF6	100	92.455	Bos_taurus
ENSDARG00000091367	prpf6	99	92.242	ENSCJAG00000010616	PRPF6	100	91.817	Callithrix_jacchus
ENSDARG00000091367	prpf6	99	93.092	ENSCAFG00000013165	PRPF6	100	92.667	Canis_familiaris
ENSDARG00000091367	prpf6	99	93.092	ENSCAFG00020002050	PRPF6	100	92.667	Canis_lupus_dingo
ENSDARG00000091367	prpf6	99	92.880	ENSCHIG00000018187	PRPF6	100	92.455	Capra_hircus
ENSDARG00000091367	prpf6	99	92.667	ENSTSYG00000007814	PRPF6	100	92.242	Carlito_syrichta
ENSDARG00000091367	prpf6	96	91.930	ENSCAPG00000015077	PRPF6	100	91.058	Cavia_aperea
ENSDARG00000091367	prpf6	99	93.092	ENSCPOG00000007518	PRPF6	100	92.667	Cavia_porcellus
ENSDARG00000091367	prpf6	99	89.054	ENSCCAG00000024564	PRPF6	100	88.629	Cebus_capucinus
ENSDARG00000091367	prpf6	99	92.242	ENSCATG00000037473	PRPF6	100	91.817	Cercocebus_atys
ENSDARG00000091367	prpf6	99	89.798	ENSCLAG00000003854	PRPF6	100	89.373	Chinchilla_lanigera
ENSDARG00000091367	prpf6	99	87.223	ENSCSAG00000016742	PRPF6	100	86.800	Chlorocebus_sabaeus
ENSDARG00000091367	prpf6	84	77.236	ENSCHOG00000003315	-	98	77.025	Choloepus_hoffmanni
ENSDARG00000091367	prpf6	99	92.932	ENSCPBG00000013964	PRPF6	97	92.511	Chrysemys_picta_bellii
ENSDARG00000091367	prpf6	99	73.651	ENSCING00000008817	-	99	73.228	Ciona_intestinalis
ENSDARG00000091367	prpf6	99	92.136	ENSCANG00000038230	PRPF6	100	91.711	Colobus_angolensis_palliatus
ENSDARG00000091367	prpf6	99	93.092	ENSCGRG00001022666	Prpf6	100	92.667	Cricetulus_griseus_chok1gshd
ENSDARG00000091367	prpf6	99	89.186	ENSCSEG00000018561	prpf6	100	89.186	Cynoglossus_semilaevis
ENSDARG00000091367	prpf6	100	94.280	ENSCVAG00000010550	prpf6	100	92.520	Cyprinodon_variegatus
ENSDARG00000091367	prpf6	99	92.349	ENSDNOG00000040544	PRPF6	100	92.030	Dasypus_novemcinctus
ENSDARG00000091367	prpf6	90	92.757	ENSDORG00000005406	Prpf6	100	92.757	Dipodomys_ordii
ENSDARG00000091367	prpf6	98	70.829	FBgn0036828	CG6841	98	70.936	Drosophila_melanogaster
ENSDARG00000091367	prpf6	85	91.667	ENSETEG00000004447	PRPF6	85	91.667	Echinops_telfairi
ENSDARG00000091367	prpf6	99	85.472	ENSEBUG00000008835	prpf6	99	85.048	Eptatretus_burgeri
ENSDARG00000091367	prpf6	99	92.880	ENSEASG00005023115	PRPF6	100	92.455	Equus_asinus_asinus
ENSDARG00000091367	prpf6	99	88.629	ENSECAG00000013983	PRPF6	100	88.204	Equus_caballus
ENSDARG00000091367	prpf6	89	95.833	ENSEEUG00000000180	PRPF6	81	95.833	Erinaceus_europaeus
ENSDARG00000091367	prpf6	100	92.812	ENSELUG00000001945	prpf6	94	92.812	Esox_lucius
ENSDARG00000091367	prpf6	99	92.986	ENSFCAG00000001183	PRPF6	100	92.561	Felis_catus
ENSDARG00000091367	prpf6	99	85.941	ENSFALG00000006046	-	98	85.941	Ficedula_albicollis
ENSDARG00000091367	prpf6	100	92.130	ENSFALG00000010326	-	98	91.815	Ficedula_albicollis
ENSDARG00000091367	prpf6	99	91.605	ENSFDAG00000006451	PRPF6	100	91.180	Fukomys_damarensis
ENSDARG00000091367	prpf6	100	94.597	ENSFHEG00000000560	prpf6	99	93.018	Fundulus_heteroclitus
ENSDARG00000091367	prpf6	100	92.373	ENSGMOG00000015622	prpf6	99	91.843	Gadus_morhua
ENSDARG00000091367	prpf6	99	92.880	ENSGALG00000006001	PRPF6	100	92.561	Gallus_gallus
ENSDARG00000091367	prpf6	100	89.619	ENSGAFG00000021109	prpf6	100	88.217	Gambusia_affinis
ENSDARG00000091367	prpf6	100	93.856	ENSGACG00000002576	prpf6	99	93.856	Gasterosteus_aculeatus
ENSDARG00000091367	prpf6	99	93.038	ENSGAGG00000008653	PRPF6	97	92.616	Gopherus_agassizii
ENSDARG00000091367	prpf6	99	92.136	ENSGGOG00000016876	PRPF6	100	91.711	Gorilla_gorilla
ENSDARG00000091367	prpf6	100	94.386	ENSHBUG00000004496	prpf6	100	92.930	Haplochromis_burtoni
ENSDARG00000091367	prpf6	99	93.092	ENSHGLG00000009222	PRPF6	100	92.667	Heterocephalus_glaber_female
ENSDARG00000091367	prpf6	96	93.021	ENSHGLG00100016600	PRPF6	100	92.585	Heterocephalus_glaber_male
ENSDARG00000091367	prpf6	100	93.326	ENSHCOG00000011513	prpf6	100	91.803	Hippocampus_comes
ENSDARG00000091367	prpf6	100	95.450	ENSIPUG00000004912	prpf6	100	93.846	Ictalurus_punctatus
ENSDARG00000091367	prpf6	99	90.552	ENSSTOG00000002922	PRPF6	100	89.703	Ictidomys_tridecemlineatus
ENSDARG00000091367	prpf6	99	93.092	ENSJJAG00000000836	Prpf6	100	92.667	Jaculus_jaculus
ENSDARG00000091367	prpf6	100	94.386	ENSKMAG00000017800	prpf6	100	92.930	Kryptolebias_marmoratus
ENSDARG00000091367	prpf6	100	93.644	ENSLBEG00000012582	prpf6	100	92.213	Labrus_bergylta
ENSDARG00000091367	prpf6	99	94.186	ENSLOCG00000004827	prpf6	100	90.000	Lepisosteus_oculatus
ENSDARG00000091367	prpf6	99	92.455	ENSLAFG00000005272	PRPF6	100	92.030	Loxodonta_africana
ENSDARG00000091367	prpf6	99	92.136	ENSMFAG00000037542	PRPF6	100	91.711	Macaca_fascicularis
ENSDARG00000091367	prpf6	99	85.775	ENSMMUG00000015558	PRPF6	95	94.474	Macaca_mulatta
ENSDARG00000091367	prpf6	99	79.025	ENSMNEG00000045555	PRPF6	100	78.602	Macaca_nemestrina
ENSDARG00000091367	prpf6	100	94.492	ENSMAMG00000010718	prpf6	100	93.033	Mastacembelus_armatus
ENSDARG00000091367	prpf6	100	93.862	ENSMZEG00005015261	-	100	93.862	Maylandia_zebra
ENSDARG00000091367	prpf6	93	93.964	ENSMZEG00005026539	prpf6	100	93.964	Maylandia_zebra
ENSDARG00000091367	prpf6	96	92.803	ENSMGAG00000006634	PRPF6	100	92.475	Meleagris_gallopavo
ENSDARG00000091367	prpf6	99	93.092	ENSMAUG00000013969	Prpf6	100	92.667	Mesocricetus_auratus
ENSDARG00000091367	prpf6	87	92.214	ENSMICG00000017793	PRPF6	98	92.232	Microcebus_murinus
ENSDARG00000091367	prpf6	99	93.092	ENSMOCG00000001701	Prpf6	100	92.667	Microtus_ochrogaster
ENSDARG00000091367	prpf6	99	94.004	ENSMMOG00000020419	prpf6	100	94.004	Mola_mola
ENSDARG00000091367	prpf6	96	93.711	ENSMODG00000017051	PRPF6	99	93.218	Monodelphis_domestica
ENSDARG00000091367	prpf6	98	94.156	ENSMALG00000000089	prpf6	100	94.156	Monopterus_albus
ENSDARG00000091367	prpf6	99	86.823	MGP_CAROLIEiJ_G0024814	Prpf6	100	85.972	Mus_caroli
ENSDARG00000091367	prpf6	99	93.092	ENSMUSG00000002455	Prpf6	100	92.667	Mus_musculus
ENSDARG00000091367	prpf6	99	93.092	MGP_PahariEiJ_G0026262	Prpf6	100	92.667	Mus_pahari
ENSDARG00000091367	prpf6	99	93.092	MGP_SPRETEiJ_G0025741	Prpf6	100	92.667	Mus_spretus
ENSDARG00000091367	prpf6	90	92.951	ENSMPUG00000008673	PRPF6	99	92.473	Mustela_putorius_furo
ENSDARG00000091367	prpf6	99	93.199	ENSNGAG00000003365	Prpf6	100	92.774	Nannospalax_galili
ENSDARG00000091367	prpf6	100	94.492	ENSNBRG00000015025	prpf6	100	93.033	Neolamprologus_brichardi
ENSDARG00000091367	prpf6	99	92.242	ENSNLEG00000010208	PRPF6	100	91.817	Nomascus_leucogenys
ENSDARG00000091367	prpf6	99	84.137	ENSMEUG00000009824	-	90	84.387	Notamacropus_eugenii
ENSDARG00000091367	prpf6	99	87.354	ENSODEG00000004841	PRPF6	100	86.929	Octodon_degus
ENSDARG00000091367	prpf6	100	94.386	ENSONIG00000017406	prpf6	100	92.930	Oreochromis_niloticus
ENSDARG00000091367	prpf6	99	93.518	ENSOANG00000004920	PRPF6	100	93.092	Ornithorhynchus_anatinus
ENSDARG00000091367	prpf6	98	91.094	ENSOCUG00000014151	PRPF6	100	90.665	Oryctolagus_cuniculus
ENSDARG00000091367	prpf6	100	93.220	ENSORLG00000009592	prpf6	100	91.701	Oryzias_latipes
ENSDARG00000091367	prpf6	100	93.326	ENSORLG00020001458	prpf6	100	91.803	Oryzias_latipes_hni
ENSDARG00000091367	prpf6	100	93.326	ENSORLG00015018762	prpf6	100	91.803	Oryzias_latipes_hsok
ENSDARG00000091367	prpf6	100	93.750	ENSOMEG00000012174	prpf6	100	92.213	Oryzias_melastigma
ENSDARG00000091367	prpf6	99	85.881	ENSOGAG00000007573	PRPF6	100	85.456	Otolemur_garnettii
ENSDARG00000091367	prpf6	99	92.169	ENSOARG00000008776	PRPF6	99	91.746	Ovis_aries
ENSDARG00000091367	prpf6	99	92.136	ENSPPAG00000008686	PRPF6	100	91.711	Pan_paniscus
ENSDARG00000091367	prpf6	99	92.986	ENSPPRG00000008497	PRPF6	100	92.561	Panthera_pardus
ENSDARG00000091367	prpf6	96	92.912	ENSPTIG00000011184	PRPF6	97	92.475	Panthera_tigris_altaica
ENSDARG00000091367	prpf6	99	92.136	ENSPTRG00000013765	PRPF6	100	91.711	Pan_troglodytes
ENSDARG00000091367	prpf6	99	92.030	ENSPANG00000024135	PRPF6	100	91.605	Papio_anubis
ENSDARG00000091367	prpf6	99	94.615	ENSPKIG00000005627	prpf6	99	94.192	Paramormyrops_kingsleyae
ENSDARG00000091367	prpf6	91	93.418	ENSPSIG00000007717	PRPF6	98	93.418	Pelodiscus_sinensis
ENSDARG00000091367	prpf6	100	93.545	ENSPMGG00000008925	prpf6	99	91.179	Periophthalmus_magnuspinnatus
ENSDARG00000091367	prpf6	99	93.092	ENSPEMG00000016036	Prpf6	100	92.667	Peromyscus_maniculatus_bairdii
ENSDARG00000091367	prpf6	100	86.540	ENSPMAG00000006144	prpf6	100	86.540	Petromyzon_marinus
ENSDARG00000091367	prpf6	99	93.411	ENSPCIG00000017909	PRPF6	100	92.986	Phascolarctos_cinereus
ENSDARG00000091367	prpf6	100	93.697	ENSPFOG00000006431	prpf6	99	92.073	Poecilia_formosa
ENSDARG00000091367	prpf6	100	94.386	ENSPLAG00000005974	prpf6	100	92.725	Poecilia_latipinna
ENSDARG00000091367	prpf6	100	94.597	ENSPMEG00000009977	prpf6	100	92.930	Poecilia_mexicana
ENSDARG00000091367	prpf6	100	94.492	ENSPREG00000017993	prpf6	95	92.930	Poecilia_reticulata
ENSDARG00000091367	prpf6	99	91.605	ENSPPYG00000011256	PRPF6	100	91.180	Pongo_abelii
ENSDARG00000091367	prpf6	94	94.935	ENSPCAG00000006536	PRPF6	88	94.281	Procavia_capensis
ENSDARG00000091367	prpf6	99	92.349	ENSPCOG00000016881	PRPF6	100	91.923	Propithecus_coquereli
ENSDARG00000091367	prpf6	99	86.823	ENSPVAG00000014316	PRPF6	100	86.397	Pteropus_vampyrus
ENSDARG00000091367	prpf6	100	76.614	ENSPNYG00000001939	prpf6	100	81.557	Pundamilia_nyererei
ENSDARG00000091367	prpf6	100	96.292	ENSPNAG00000015606	prpf6	100	95.175	Pygocentrus_nattereri
ENSDARG00000091367	prpf6	99	93.199	ENSRNOG00000051498	Prpf6	100	92.774	Rattus_norvegicus
ENSDARG00000091367	prpf6	99	92.136	ENSRBIG00000043613	PRPF6	100	91.711	Rhinopithecus_bieti
ENSDARG00000091367	prpf6	99	88.995	ENSRROG00000040969	PRPF6	100	88.571	Rhinopithecus_roxellana
ENSDARG00000091367	prpf6	89	89.800	ENSSBOG00000020632	PRPF6	90	88.256	Saimiri_boliviensis_boliviensis
ENSDARG00000091367	prpf6	99	93.411	ENSSHAG00000016810	PRPF6	100	92.986	Sarcophilus_harrisii
ENSDARG00000091367	prpf6	98	95.161	ENSSFOG00015020859	prpf6	100	94.731	Scleropages_formosus
ENSDARG00000091367	prpf6	100	93.326	ENSSMAG00000008112	prpf6	97	93.326	Scophthalmus_maximus
ENSDARG00000091367	prpf6	100	94.386	ENSSDUG00000016142	prpf6	100	92.828	Seriola_dumerili
ENSDARG00000091367	prpf6	100	94.386	ENSSLDG00000025283	prpf6	99	92.828	Seriola_lalandi_dorsalis
ENSDARG00000091367	prpf6	91	91.686	ENSSPUG00000018260	PRPF6	98	91.686	Sphenodon_punctatus
ENSDARG00000091367	prpf6	100	94.386	ENSSPAG00000015850	prpf6	100	92.930	Stegastes_partitus
ENSDARG00000091367	prpf6	99	92.169	ENSSSCG00000029119	PRPF6	100	91.723	Sus_scrofa
ENSDARG00000091367	prpf6	99	92.986	ENSTGUG00000007221	PRPF6	99	92.667	Taeniopygia_guttata
ENSDARG00000091367	prpf6	100	93.856	ENSTRUG00000002920	prpf6	100	92.316	Takifugu_rubripes
ENSDARG00000091367	prpf6	99	87.182	ENSTNIG00000017873	prpf6	100	87.182	Tetraodon_nigroviridis
ENSDARG00000091367	prpf6	88	95.000	ENSTBEG00000005348	PRPF6	85	92.778	Tupaia_belangeri
ENSDARG00000091367	prpf6	99	92.880	ENSTTRG00000013068	PRPF6	100	92.455	Tursiops_truncatus
ENSDARG00000091367	prpf6	97	91.413	ENSUMAG00000021631	PRPF6	98	90.978	Ursus_maritimus
ENSDARG00000091367	prpf6	99	93.092	ENSVVUG00000014948	PRPF6	100	92.667	Vulpes_vulpes
ENSDARG00000091367	prpf6	99	91.667	ENSXETG00000012054	prpf6	98	91.245	Xenopus_tropicalis
ENSDARG00000091367	prpf6	100	94.597	ENSXCOG00000008082	prpf6	100	92.930	Xiphophorus_couchianus
ENSDARG00000091367	prpf6	100	94.597	ENSXMAG00000015581	prpf6	100	92.930	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component