EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000091393 (Gene tree)
Gene ID: 100005838
Gene Symbol: si:ch211-161m3.6
Alias: -
Full Name: si:ch211-161m3.6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 16758 bases
Position: chr4:72436227-72452984
Accession: ZDB-GENE-161017-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	1	6
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	2	6
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	3	6
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	4	6
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	5	6
ENSDARP00000109281	zf-C2H2	PF00096.26	1.2e-45	6	6
ENSDARP00000109281	zf-met	PF12874.7	0.00044	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000125726	-	4221	-	ENSDARP00000109281	295 (aa)	-	E7EZN1

Gene Model

Click here to download ENSDARG00000091393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000091393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000091393	si:ch211-161m3.6	96	48.582	ENSDARG00000101365	si:cabz01021430.2	100	52.632
ENSDARG00000091393	si:ch211-161m3.6	99	50.980	ENSDARG00000105692	CABZ01069022.1	92	58.519
ENSDARG00000091393	si:ch211-161m3.6	96	57.554	ENSDARG00000102008	si:dkey-72l17.6	79	51.639
ENSDARG00000091393	si:ch211-161m3.6	96	56.115	ENSDARG00000113808	si:dkeyp-82b4.6	90	53.448
ENSDARG00000091393	si:ch211-161m3.6	97	44.599	ENSDARG00000074298	znf1015	100	57.265
ENSDARG00000091393	si:ch211-161m3.6	99	50.554	ENSDARG00000089715	si:cabz01054394.7	98	50.554
ENSDARG00000091393	si:ch211-161m3.6	99	58.289	ENSDARG00000074365	zgc:171901	99	63.415
ENSDARG00000091393	si:ch211-161m3.6	99	56.150	ENSDARG00000101137	znf999	100	44.444
ENSDARG00000091393	si:ch211-161m3.6	99	48.677	ENSDARG00000089598	si:cabz01054396.2	100	53.684
ENSDARG00000091393	si:ch211-161m3.6	99	49.351	ENSDARG00000104678	CU467646.6	80	49.351
ENSDARG00000091393	si:ch211-161m3.6	92	57.055	ENSDARG00000088367	si:cabz01069013.3	93	57.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000091393	si:ch211-161m3.6	66	40.426	ENSATEG00000023773	-	50	40.426	Anabas_testudineus
ENSDARG00000091393	si:ch211-161m3.6	67	40.816	ENSCSEG00000011817	-	60	40.816	Cynoglossus_semilaevis
ENSDARG00000091393	si:ch211-161m3.6	93	52.672	ENSFHEG00000020010	-	52	52.672	Fundulus_heteroclitus
ENSDARG00000091393	si:ch211-161m3.6	68	54.945	ENSGMOG00000020024	-	100	54.945	Gadus_morhua
ENSDARG00000091393	si:ch211-161m3.6	64	40.385	ENSGAFG00000013839	-	56	40.385	Gambusia_affinis
ENSDARG00000091393	si:ch211-161m3.6	79	46.429	ENSKMAG00000014002	si:ch211-79k12.2	79	46.429	Kryptolebias_marmoratus
ENSDARG00000091393	si:ch211-161m3.6	63	43.103	ENSNBRG00000019881	-	64	41.026	Neolamprologus_brichardi
ENSDARG00000091393	si:ch211-161m3.6	87	50.625	ENSORLG00000024194	-	55	50.625	Oryzias_latipes
ENSDARG00000091393	si:ch211-161m3.6	63	42.254	ENSOMEG00000005928	-	58	40.940	Oryzias_melastigma
ENSDARG00000091393	si:ch211-161m3.6	83	51.872	ENSPFOG00000003366	-	52	50.495	Poecilia_formosa
ENSDARG00000091393	si:ch211-161m3.6	86	49.697	ENSPLAG00000023537	-	83	49.697	Poecilia_latipinna
ENSDARG00000091393	si:ch211-161m3.6	71	56.489	ENSPREG00000005015	-	94	52.632	Poecilia_reticulata
ENSDARG00000091393	si:ch211-161m3.6	65	39.103	ENSSPAG00000017203	-	73	36.464	Stegastes_partitus
ENSDARG00000091393	si:ch211-161m3.6	72	49.412	ENSTRUG00000022969	-	97	49.412	Takifugu_rubripes
ENSDARG00000091393	si:ch211-161m3.6	89	53.254	ENSXCOG00000003499	-	78	53.254	Xiphophorus_couchianus
ENSDARG00000091393	si:ch211-161m3.6	64	48.214	ENSXCOG00000015435	-	81	48.214	Xiphophorus_couchianus
ENSDARG00000091393	si:ch211-161m3.6	67	38.202	ENSXMAG00000024816	-	52	38.202	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function