EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000091652 (Gene tree)
Gene ID: 394008
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 50249 bases
Position: chr2:16597011-16647259
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000105487	XRN_N	PF03159.18	4.4e-96	1	1
ENSDARP00000141389	XRN_N	PF03159.18	4.7e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000160641	-	1694	-	ENSDARP00000141389	483 (aa)	-	A0A0R4IYZ5
ENSDART00000125413	-	6418	XM_005163317	ENSDARP00000105487	1697 (aa)	XP_005163374	F1Q4U5

Gene Model

Click here to download ENSDARG00000091652's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000091652's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000091652	xrn1	98	36.496	ENSDARG00000101900	xrn2	78	43.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000091652	xrn1	98	79.325	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSDARG00000091652	xrn1	98	83.755	ENSAPOG00000000622	xrn1	99	80.519	Acanthochromis_polyacanthus
ENSDARG00000091652	xrn1	98	79.114	ENSAMEG00000012538	XRN1	99	61.953	Ailuropoda_melanoleuca
ENSDARG00000091652	xrn1	98	83.579	ENSACIG00000001057	xrn1	98	80.360	Amphilophus_citrinellus
ENSDARG00000091652	xrn1	98	83.544	ENSAOCG00000014097	xrn1	100	72.706	Amphiprion_ocellaris
ENSDARG00000091652	xrn1	98	83.333	ENSAPEG00000006620	xrn1	99	72.959	Amphiprion_percula
ENSDARG00000091652	xrn1	98	78.992	ENSATEG00000009752	xrn1	100	77.484	Anabas_testudineus
ENSDARG00000091652	xrn1	98	80.973	ENSAPLG00000004905	XRN1	100	63.379	Anas_platyrhynchos
ENSDARG00000091652	xrn1	98	79.493	ENSACAG00000004985	XRN1	99	61.680	Anolis_carolinensis
ENSDARG00000091652	xrn1	98	79.958	ENSANAG00000029013	XRN1	99	75.397	Aotus_nancymaae
ENSDARG00000091652	xrn1	98	81.435	ENSACLG00000004806	xrn1	99	71.338	Astatotilapia_calliptera
ENSDARG00000091652	xrn1	100	77.138	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSDARG00000091652	xrn1	98	79.747	ENSBTAG00000011524	XRN1	99	62.472	Bos_taurus
ENSDARG00000091652	xrn1	98	48.321	WBGene00012730	xrn-1	79	38.217	Caenorhabditis_elegans
ENSDARG00000091652	xrn1	98	79.958	ENSCJAG00000001872	XRN1	99	64.341	Callithrix_jacchus
ENSDARG00000091652	xrn1	98	80.761	ENSCAFG00000007783	XRN1	99	63.077	Canis_familiaris
ENSDARG00000091652	xrn1	98	80.380	ENSCAFG00020009120	XRN1	99	76.656	Canis_lupus_dingo
ENSDARG00000091652	xrn1	98	79.325	ENSCHIG00000019192	XRN1	99	62.535	Capra_hircus
ENSDARG00000091652	xrn1	98	79.114	ENSTSYG00000002705	XRN1	99	62.980	Carlito_syrichta
ENSDARG00000091652	xrn1	98	58.650	ENSCAPG00000004604	-	98	61.944	Cavia_aperea
ENSDARG00000091652	xrn1	98	80.169	ENSCCAG00000034800	XRN1	99	79.239	Cebus_capucinus
ENSDARG00000091652	xrn1	98	79.958	ENSCATG00000041794	XRN1	99	63.164	Cercocebus_atys
ENSDARG00000091652	xrn1	98	79.958	ENSCLAG00000001451	XRN1	99	79.873	Chinchilla_lanigera
ENSDARG00000091652	xrn1	98	79.958	ENSCSAG00000011265	XRN1	99	62.621	Chlorocebus_sabaeus
ENSDARG00000091652	xrn1	53	94.805	ENSCHOG00000013961	-	55	94.805	Choloepus_hoffmanni
ENSDARG00000091652	xrn1	99	58.212	ENSCING00000001334	-	95	72.900	Ciona_intestinalis
ENSDARG00000091652	xrn1	98	58.351	ENSCSAVG00000008584	-	91	51.195	Ciona_savignyi
ENSDARG00000091652	xrn1	98	79.958	ENSCANG00000037495	XRN1	99	79.081	Colobus_angolensis_palliatus
ENSDARG00000091652	xrn1	98	79.958	ENSCGRG00001019411	Xrn1	99	79.239	Cricetulus_griseus_chok1gshd
ENSDARG00000091652	xrn1	98	79.958	ENSCGRG00000012464	Xrn1	99	79.239	Cricetulus_griseus_crigri
ENSDARG00000091652	xrn1	98	82.700	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSDARG00000091652	xrn1	98	78.224	ENSCVAG00000013089	xrn1	99	79.682	Cyprinodon_variegatus
ENSDARG00000091652	xrn1	98	79.958	ENSDORG00000013833	Xrn1	99	62.564	Dipodomys_ordii
ENSDARG00000091652	xrn1	98	50.106	FBgn0020261	pcm	71	40.989	Drosophila_melanogaster
ENSDARG00000091652	xrn1	98	61.814	ENSETEG00000003978	XRN1	88	73.554	Echinops_telfairi
ENSDARG00000091652	xrn1	98	80.421	ENSEASG00005002687	XRN1	99	80.032	Equus_asinus_asinus
ENSDARG00000091652	xrn1	98	80.169	ENSECAG00000008301	XRN1	99	62.914	Equus_caballus
ENSDARG00000091652	xrn1	98	79.493	ENSEEUG00000011323	XRN1	89	82.723	Erinaceus_europaeus
ENSDARG00000091652	xrn1	98	85.624	ENSELUG00000000169	xrn1	100	74.827	Esox_lucius
ENSDARG00000091652	xrn1	98	67.158	ENSFCAG00000027589	XRN1	99	81.878	Felis_catus
ENSDARG00000091652	xrn1	98	80.761	ENSFALG00000007021	XRN1	100	63.469	Ficedula_albicollis
ENSDARG00000091652	xrn1	98	79.536	ENSFDAG00000020494	XRN1	99	79.715	Fukomys_damarensis
ENSDARG00000091652	xrn1	99	72.614	ENSFHEG00000017356	-	98	72.822	Fundulus_heteroclitus
ENSDARG00000091652	xrn1	98	78.013	ENSGMOG00000006396	xrn1	87	74.874	Gadus_morhua
ENSDARG00000091652	xrn1	98	80.761	ENSGALG00000002706	XRN1	100	63.866	Gallus_gallus
ENSDARG00000091652	xrn1	98	80.842	ENSGACG00000014328	xrn1	100	68.261	Gasterosteus_aculeatus
ENSDARG00000091652	xrn1	98	80.761	ENSGAGG00000017535	XRN1	99	65.105	Gopherus_agassizii
ENSDARG00000091652	xrn1	98	79.325	ENSGGOG00000008047	XRN1	99	63.475	Gorilla_gorilla
ENSDARG00000091652	xrn1	100	77.893	ENSHBUG00000005908	xrn1	97	76.398	Haplochromis_burtoni
ENSDARG00000091652	xrn1	98	79.536	ENSHGLG00000014476	XRN1	99	79.398	Heterocephalus_glaber_female
ENSDARG00000091652	xrn1	98	79.536	ENSHGLG00100015130	XRN1	99	79.398	Heterocephalus_glaber_male
ENSDARG00000091652	xrn1	98	80.665	ENSHCOG00000014062	xrn1	99	77.124	Hippocampus_comes
ENSDARG00000091652	xrn1	98	87.104	ENSIPUG00000015229	xrn1	100	76.044	Ictalurus_punctatus
ENSDARG00000091652	xrn1	98	79.536	ENSSTOG00000013552	XRN1	99	78.922	Ictidomys_tridecemlineatus
ENSDARG00000091652	xrn1	98	80.084	ENSJJAG00000010863	Xrn1	99	79.475	Jaculus_jaculus
ENSDARG00000091652	xrn1	98	82.664	ENSKMAG00000021356	xrn1	95	81.172	Kryptolebias_marmoratus
ENSDARG00000091652	xrn1	100	81.893	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSDARG00000091652	xrn1	98	79.915	ENSLACG00000009020	XRN1	99	63.391	Latimeria_chalumnae
ENSDARG00000091652	xrn1	98	84.567	ENSLOCG00000007944	xrn1	100	71.429	Lepisosteus_oculatus
ENSDARG00000091652	xrn1	98	79.915	ENSLAFG00000015426	XRN1	99	75.094	Loxodonta_africana
ENSDARG00000091652	xrn1	98	79.958	ENSMFAG00000032599	XRN1	99	63.050	Macaca_fascicularis
ENSDARG00000091652	xrn1	98	79.958	ENSMMUG00000014038	XRN1	99	63.050	Macaca_mulatta
ENSDARG00000091652	xrn1	98	79.747	ENSMNEG00000034217	XRN1	99	62.993	Macaca_nemestrina
ENSDARG00000091652	xrn1	74	77.933	ENSMLEG00000041349	-	99	81.400	Mandrillus_leucophaeus
ENSDARG00000091652	xrn1	100	83.023	ENSMAMG00000013219	xrn1	99	79.206	Mastacembelus_armatus
ENSDARG00000091652	xrn1	98	81.435	ENSMZEG00005015099	xrn1	99	71.239	Maylandia_zebra
ENSDARG00000091652	xrn1	98	76.101	ENSMGAG00000006333	XRN1	99	62.392	Meleagris_gallopavo
ENSDARG00000091652	xrn1	98	79.958	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSDARG00000091652	xrn1	98	79.958	ENSMOCG00000008665	Xrn1	99	79.239	Microtus_ochrogaster
ENSDARG00000091652	xrn1	99	77.500	ENSMMOG00000020896	-	96	73.077	Mola_mola
ENSDARG00000091652	xrn1	98	80.973	ENSMODG00000021236	XRN1	99	62.266	Monodelphis_domestica
ENSDARG00000091652	xrn1	95	75.328	ENSMALG00000004098	xrn1	100	67.768	Monopterus_albus
ENSDARG00000091652	xrn1	98	80.380	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSDARG00000091652	xrn1	98	80.169	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSDARG00000091652	xrn1	98	80.550	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSDARG00000091652	xrn1	98	80.169	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSDARG00000091652	xrn1	98	80.169	ENSMPUG00000012040	XRN1	99	63.269	Mustela_putorius_furo
ENSDARG00000091652	xrn1	98	79.958	ENSMLUG00000016885	XRN1	99	62.752	Myotis_lucifugus
ENSDARG00000091652	xrn1	98	73.629	ENSNGAG00000023964	Xrn1	99	75.436	Nannospalax_galili
ENSDARG00000091652	xrn1	98	80.169	ENSNLEG00000004726	XRN1	99	63.014	Nomascus_leucogenys
ENSDARG00000091652	xrn1	63	96.907	ENSMEUG00000014473	-	64	97.087	Notamacropus_eugenii
ENSDARG00000091652	xrn1	90	70.805	ENSOPRG00000007337	-	64	71.533	Ochotona_princeps
ENSDARG00000091652	xrn1	98	81.875	ENSONIG00000016673	xrn1	99	73.964	Oreochromis_niloticus
ENSDARG00000091652	xrn1	90	79.863	ENSOANG00000006735	XRN1	99	59.396	Ornithorhynchus_anatinus
ENSDARG00000091652	xrn1	98	79.747	ENSOCUG00000001861	XRN1	99	62.571	Oryctolagus_cuniculus
ENSDARG00000091652	xrn1	98	82.068	ENSORLG00000013005	xrn1	98	69.486	Oryzias_latipes
ENSDARG00000091652	xrn1	98	82.068	ENSORLG00020005559	xrn1	100	69.240	Oryzias_latipes_hni
ENSDARG00000091652	xrn1	98	82.068	ENSORLG00015022523	xrn1	100	68.897	Oryzias_latipes_hsok
ENSDARG00000091652	xrn1	98	82.911	ENSOMEG00000015397	xrn1	99	80.606	Oryzias_melastigma
ENSDARG00000091652	xrn1	98	74.051	ENSOGAG00000000170	XRN1	99	60.502	Otolemur_garnettii
ENSDARG00000091652	xrn1	98	79.536	ENSOARG00000006343	XRN1	99	62.436	Ovis_aries
ENSDARG00000091652	xrn1	98	79.536	ENSPPAG00000010180	XRN1	99	63.454	Pan_paniscus
ENSDARG00000091652	xrn1	98	80.000	ENSPPRG00000007125	XRN1	99	63.423	Panthera_pardus
ENSDARG00000091652	xrn1	98	80.000	ENSPTIG00000021081	XRN1	99	63.423	Panthera_tigris_altaica
ENSDARG00000091652	xrn1	98	79.536	ENSPTRG00000015482	XRN1	99	63.454	Pan_troglodytes
ENSDARG00000091652	xrn1	98	79.958	ENSPANG00000010638	XRN1	99	62.993	Papio_anubis
ENSDARG00000091652	xrn1	98	80.842	ENSPSIG00000018050	XRN1	100	61.905	Pelodiscus_sinensis
ENSDARG00000091652	xrn1	98	80.973	ENSPMGG00000002648	xrn1	99	81.732	Periophthalmus_magnuspinnatus
ENSDARG00000091652	xrn1	98	80.169	ENSPEMG00000020610	Xrn1	99	79.081	Peromyscus_maniculatus_bairdii
ENSDARG00000091652	xrn1	98	57.439	ENSPMAG00000002975	xrn1	99	53.085	Petromyzon_marinus
ENSDARG00000091652	xrn1	98	80.761	ENSPCIG00000028735	XRN1	99	80.476	Phascolarctos_cinereus
ENSDARG00000091652	xrn1	98	81.474	ENSPFOG00000013932	xrn1	99	73.202	Poecilia_formosa
ENSDARG00000091652	xrn1	98	81.818	ENSPLAG00000021653	xrn1	99	73.325	Poecilia_latipinna
ENSDARG00000091652	xrn1	98	81.646	ENSPMEG00000003076	xrn1	95	73.777	Poecilia_mexicana
ENSDARG00000091652	xrn1	98	81.551	ENSPREG00000021147	xrn1	100	70.419	Poecilia_reticulata
ENSDARG00000091652	xrn1	98	79.958	ENSPPYG00000014172	XRN1	99	62.670	Pongo_abelii
ENSDARG00000091652	xrn1	98	79.281	ENSPCAG00000005638	XRN1	92	81.752	Procavia_capensis
ENSDARG00000091652	xrn1	98	79.114	ENSPCOG00000013089	XRN1	99	78.605	Propithecus_coquereli
ENSDARG00000091652	xrn1	98	71.730	ENSPVAG00000016265	XRN1	96	71.737	Pteropus_vampyrus
ENSDARG00000091652	xrn1	98	81.857	ENSPNYG00000010570	xrn1	99	70.886	Pundamilia_nyererei
ENSDARG00000091652	xrn1	98	83.789	ENSPNAG00000023531	xrn1	100	77.146	Pygocentrus_nattereri
ENSDARG00000091652	xrn1	98	80.591	ENSRNOG00000042951	Xrn1	99	62.307	Rattus_norvegicus
ENSDARG00000091652	xrn1	98	79.747	ENSRBIG00000041227	XRN1	99	62.816	Rhinopithecus_bieti
ENSDARG00000091652	xrn1	74	77.374	ENSRROG00000033764	-	100	96.117	Rhinopithecus_roxellana
ENSDARG00000091652	xrn1	98	38.657	YGL173C	XRN1	73	54.076	Saccharomyces_cerevisiae
ENSDARG00000091652	xrn1	98	80.169	ENSSBOG00000029561	XRN1	99	62.735	Saimiri_boliviensis_boliviensis
ENSDARG00000091652	xrn1	98	81.184	ENSSHAG00000016207	XRN1	99	61.292	Sarcophilus_harrisii
ENSDARG00000091652	xrn1	98	83.721	ENSSFOG00015024211	xrn1	100	70.671	Scleropages_formosus
ENSDARG00000091652	xrn1	98	82.664	ENSSMAG00000016534	xrn1	99	77.484	Scophthalmus_maximus
ENSDARG00000091652	xrn1	98	85.201	ENSSDUG00000010306	xrn1	97	81.633	Seriola_dumerili
ENSDARG00000091652	xrn1	98	85.412	ENSSLDG00000021543	xrn1	100	76.792	Seriola_lalandi_dorsalis
ENSDARG00000091652	xrn1	98	79.493	ENSSARG00000007741	-	82	69.175	Sorex_araneus
ENSDARG00000091652	xrn1	99	79.253	ENSSPUG00000010779	-	96	79.253	Sphenodon_punctatus
ENSDARG00000091652	xrn1	99	81.856	ENSSPAG00000009856	-	95	80.041	Stegastes_partitus
ENSDARG00000091652	xrn1	98	80.761	ENSTGUG00000008498	XRN1	100	63.352	Taeniopygia_guttata
ENSDARG00000091652	xrn1	98	80.591	ENSTRUG00000004895	xrn1	96	80.000	Takifugu_rubripes
ENSDARG00000091652	xrn1	98	81.053	ENSTNIG00000017615	xrn1	100	65.861	Tetraodon_nigroviridis
ENSDARG00000091652	xrn1	82	82.784	ENSTBEG00000003256	XRN1	83	86.828	Tupaia_belangeri
ENSDARG00000091652	xrn1	98	77.004	ENSTTRG00000012914	XRN1	99	59.430	Tursiops_truncatus
ENSDARG00000091652	xrn1	98	75.105	ENSUAMG00000001608	XRN1	99	75.436	Ursus_americanus
ENSDARG00000091652	xrn1	98	79.958	ENSUMAG00000013625	XRN1	99	62.877	Ursus_maritimus
ENSDARG00000091652	xrn1	98	79.747	ENSVPAG00000004690	XRN1	99	60.969	Vicugna_pacos
ENSDARG00000091652	xrn1	98	79.958	ENSVVUG00000024461	XRN1	99	79.744	Vulpes_vulpes
ENSDARG00000091652	xrn1	98	80.591	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSDARG00000091652	xrn1	98	81.184	ENSXCOG00000007917	xrn1	100	67.718	Xiphophorus_couchianus
ENSDARG00000091652	xrn1	98	79.704	ENSXMAG00000018320	xrn1	99	78.278	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0008409	5'-3' exonuclease activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function