EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000091656 (Gene tree)
Gene ID: 566017
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2565 bases
Position: chr4:9536860-9539424
Accession: ZDB-GENE-070629-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000104545	LSM	PF01423.22	8.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000130083	-	628	-	ENSDARP00000104545	96 (aa)	-	E7EZ02

Gene Model

Click here to download ENSDARG00000091656's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000091656's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000091656	lsm8	76	33.333	ENSDARG00000043177	lsm1	56	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000091656	lsm8	100	91.667	ENSG00000128534	LSM8	100	97.333	Homo_sapiens
ENSDARG00000091656	lsm8	100	96.875	ENSAPOG00000008649	lsm8	100	96.875	Acanthochromis_polyacanthus
ENSDARG00000091656	lsm8	100	91.667	ENSAMEG00000001162	LSM8	100	91.667	Ailuropoda_melanoleuca
ENSDARG00000091656	lsm8	78	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSDARG00000091656	lsm8	100	96.875	ENSAOCG00000013926	lsm8	100	96.875	Amphiprion_ocellaris
ENSDARG00000091656	lsm8	100	96.875	ENSAPEG00000023502	lsm8	100	96.875	Amphiprion_percula
ENSDARG00000091656	lsm8	78	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSDARG00000091656	lsm8	89	96.471	ENSAPLG00000005115	LSM8	86	96.471	Anas_platyrhynchos
ENSDARG00000091656	lsm8	100	91.667	ENSANAG00000027771	LSM8	100	94.595	Aotus_nancymaae
ENSDARG00000091656	lsm8	100	96.875	ENSACLG00000011253	lsm8	100	96.875	Astatotilapia_calliptera
ENSDARG00000091656	lsm8	100	96.875	ENSAMXG00000042902	lsm8	100	96.875	Astyanax_mexicanus
ENSDARG00000091656	lsm8	100	91.667	ENSBTAG00000012649	LSM8	100	91.667	Bos_taurus
ENSDARG00000091656	lsm8	98	55.319	WBGene00003082	lsm-8	96	55.319	Caenorhabditis_elegans
ENSDARG00000091656	lsm8	100	91.667	ENSCJAG00000046406	LSM8	100	94.595	Callithrix_jacchus
ENSDARG00000091656	lsm8	98	92.553	ENSCAFG00000016459	LSM8	95	92.553	Canis_familiaris
ENSDARG00000091656	lsm8	89	90.588	ENSCAFG00020012800	-	66	90.588	Canis_lupus_dingo
ENSDARG00000091656	lsm8	100	91.667	ENSCAFG00020007643	-	100	91.667	Canis_lupus_dingo
ENSDARG00000091656	lsm8	89	95.294	ENSCHIG00000014201	LSM8	90	95.294	Capra_hircus
ENSDARG00000091656	lsm8	100	91.667	ENSTSYG00000032434	LSM8	100	91.667	Carlito_syrichta
ENSDARG00000091656	lsm8	77	95.946	ENSCAPG00000008253	LSM8	100	95.946	Cavia_aperea
ENSDARG00000091656	lsm8	100	91.667	ENSCPOG00000035673	LSM8	100	91.667	Cavia_porcellus
ENSDARG00000091656	lsm8	100	91.667	ENSCCAG00000021329	LSM8	100	94.595	Cebus_capucinus
ENSDARG00000091656	lsm8	100	91.667	ENSCATG00000045302	LSM8	100	94.595	Cercocebus_atys
ENSDARG00000091656	lsm8	100	91.667	ENSCLAG00000003726	LSM8	100	91.667	Chinchilla_lanigera
ENSDARG00000091656	lsm8	100	91.667	ENSCSAG00000010802	-	100	91.667	Chlorocebus_sabaeus
ENSDARG00000091656	lsm8	100	87.500	ENSCSAG00000019007	-	100	87.500	Chlorocebus_sabaeus
ENSDARG00000091656	lsm8	89	95.294	ENSCPBG00000008154	LSM8	87	95.294	Chrysemys_picta_bellii
ENSDARG00000091656	lsm8	100	73.958	ENSCING00000024877	-	100	73.958	Ciona_intestinalis
ENSDARG00000091656	lsm8	100	91.667	ENSCANG00000040728	LSM8	100	94.595	Colobus_angolensis_palliatus
ENSDARG00000091656	lsm8	100	91.667	ENSCGRG00001000450	Lsm8	100	91.667	Cricetulus_griseus_chok1gshd
ENSDARG00000091656	lsm8	89	95.294	ENSCGRG00000005587	Lsm8	100	95.294	Cricetulus_griseus_crigri
ENSDARG00000091656	lsm8	100	82.292	ENSCSEG00000004164	lsm8	100	82.292	Cynoglossus_semilaevis
ENSDARG00000091656	lsm8	100	95.833	ENSCVAG00000020547	lsm8	100	95.833	Cyprinodon_variegatus
ENSDARG00000091656	lsm8	100	91.667	ENSDNOG00000034613	LSM8	100	91.667	Dasypus_novemcinctus
ENSDARG00000091656	lsm8	100	91.667	ENSDORG00000027868	Lsm8	100	91.667	Dipodomys_ordii
ENSDARG00000091656	lsm8	98	68.085	FBgn0035271	CG2021	99	68.085	Drosophila_melanogaster
ENSDARG00000091656	lsm8	100	92.708	ENSETEG00000011594	LSM8	100	92.708	Echinops_telfairi
ENSDARG00000091656	lsm8	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSDARG00000091656	lsm8	100	91.667	ENSEASG00005008932	LSM8	62	91.667	Equus_asinus_asinus
ENSDARG00000091656	lsm8	89	95.294	ENSECAG00000024025	LSM8	77	95.294	Equus_caballus
ENSDARG00000091656	lsm8	100	93.750	ENSELUG00000010138	lsm8	100	93.750	Esox_lucius
ENSDARG00000091656	lsm8	100	91.667	ENSFCAG00000036620	-	100	91.667	Felis_catus
ENSDARG00000091656	lsm8	85	70.732	ENSFCAG00000044794	-	83	70.732	Felis_catus
ENSDARG00000091656	lsm8	100	92.708	ENSFALG00000010023	LSM8	100	92.708	Ficedula_albicollis
ENSDARG00000091656	lsm8	100	91.667	ENSFDAG00000019530	LSM8	100	91.667	Fukomys_damarensis
ENSDARG00000091656	lsm8	100	96.875	ENSFHEG00000013729	lsm8	100	96.875	Fundulus_heteroclitus
ENSDARG00000091656	lsm8	100	92.708	ENSGALG00000009110	LSM8	100	92.708	Gallus_gallus
ENSDARG00000091656	lsm8	100	95.833	ENSGAFG00000001135	lsm8	100	95.833	Gambusia_affinis
ENSDARG00000091656	lsm8	100	91.667	ENSGAGG00000017366	LSM8	100	91.667	Gopherus_agassizii
ENSDARG00000091656	lsm8	100	91.667	ENSGGOG00000041883	LSM8	100	91.667	Gorilla_gorilla
ENSDARG00000091656	lsm8	100	96.875	ENSHBUG00000003646	lsm8	100	96.875	Haplochromis_burtoni
ENSDARG00000091656	lsm8	100	85.417	ENSHGLG00000019782	-	100	85.417	Heterocephalus_glaber_female
ENSDARG00000091656	lsm8	71	89.706	ENSHGLG00000001988	-	99	89.706	Heterocephalus_glaber_female
ENSDARG00000091656	lsm8	98	90.426	ENSHGLG00100003934	-	94	90.426	Heterocephalus_glaber_male
ENSDARG00000091656	lsm8	100	87.500	ENSHGLG00100012166	-	100	87.500	Heterocephalus_glaber_male
ENSDARG00000091656	lsm8	100	95.833	ENSHCOG00000005037	lsm8	100	95.833	Hippocampus_comes
ENSDARG00000091656	lsm8	100	96.875	ENSIPUG00000019811	NAA38	100	96.875	Ictalurus_punctatus
ENSDARG00000091656	lsm8	100	91.667	ENSSTOG00000009039	LSM8	100	91.667	Ictidomys_tridecemlineatus
ENSDARG00000091656	lsm8	92	81.818	ENSSTOG00000034801	-	81	81.818	Ictidomys_tridecemlineatus
ENSDARG00000091656	lsm8	100	91.667	ENSJJAG00000009031	Lsm8	99	91.667	Jaculus_jaculus
ENSDARG00000091656	lsm8	100	96.875	ENSKMAG00000018983	lsm8	100	96.875	Kryptolebias_marmoratus
ENSDARG00000091656	lsm8	100	92.708	ENSLACG00000010231	LSM8	100	92.708	Latimeria_chalumnae
ENSDARG00000091656	lsm8	100	95.833	ENSLOCG00000015580	lsm8	100	95.833	Lepisosteus_oculatus
ENSDARG00000091656	lsm8	100	90.722	ENSLAFG00000011242	LSM8	100	90.722	Loxodonta_africana
ENSDARG00000091656	lsm8	100	91.667	ENSMFAG00000035798	LSM8	100	94.595	Macaca_fascicularis
ENSDARG00000091656	lsm8	100	87.500	ENSMFAG00000013044	-	100	87.500	Macaca_fascicularis
ENSDARG00000091656	lsm8	100	91.667	ENSMMUG00000046401	LSM8	100	94.595	Macaca_mulatta
ENSDARG00000091656	lsm8	78	93.333	ENSMNEG00000011141	-	100	93.333	Macaca_nemestrina
ENSDARG00000091656	lsm8	100	91.667	ENSMNEG00000036764	-	100	94.595	Macaca_nemestrina
ENSDARG00000091656	lsm8	100	91.667	ENSMLEG00000035828	-	100	94.595	Mandrillus_leucophaeus
ENSDARG00000091656	lsm8	100	76.042	ENSMLEG00000039324	-	100	76.042	Mandrillus_leucophaeus
ENSDARG00000091656	lsm8	78	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSDARG00000091656	lsm8	100	96.875	ENSMZEG00005019138	lsm8	100	96.875	Maylandia_zebra
ENSDARG00000091656	lsm8	100	92.708	ENSMGAG00000008808	LSM8	100	92.708	Meleagris_gallopavo
ENSDARG00000091656	lsm8	100	85.417	ENSMAUG00000015721	-	100	85.417	Mesocricetus_auratus
ENSDARG00000091656	lsm8	75	90.278	ENSMAUG00000020287	-	100	87.838	Mesocricetus_auratus
ENSDARG00000091656	lsm8	100	72.917	ENSMAUG00000015356	-	100	72.917	Mesocricetus_auratus
ENSDARG00000091656	lsm8	100	91.667	ENSMICG00000042730	LSM8	100	91.667	Microcebus_murinus
ENSDARG00000091656	lsm8	100	91.667	ENSMOCG00000001688	Lsm8	100	91.667	Microtus_ochrogaster
ENSDARG00000091656	lsm8	78	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSDARG00000091656	lsm8	76	85.333	ENSMODG00000015729	LSM8	96	85.333	Monodelphis_domestica
ENSDARG00000091656	lsm8	100	95.833	ENSMALG00000000405	lsm8	100	95.833	Monopterus_albus
ENSDARG00000091656	lsm8	100	91.667	MGP_CAROLIEiJ_G0028125	-	100	91.667	Mus_caroli
ENSDARG00000091656	lsm8	100	91.667	ENSMUSG00000044155	Lsm8	100	91.667	Mus_musculus
ENSDARG00000091656	lsm8	100	91.667	MGP_PahariEiJ_G0021881	Lsm8	100	97.333	Mus_pahari
ENSDARG00000091656	lsm8	100	91.667	MGP_SPRETEiJ_G0029125	-	100	91.667	Mus_spretus
ENSDARG00000091656	lsm8	100	91.667	ENSMLUG00000006837	-	100	91.667	Myotis_lucifugus
ENSDARG00000091656	lsm8	100	90.625	ENSMLUG00000027762	-	100	90.625	Myotis_lucifugus
ENSDARG00000091656	lsm8	100	91.667	ENSNGAG00000016554	Lsm8	100	91.667	Nannospalax_galili
ENSDARG00000091656	lsm8	100	96.875	ENSNBRG00000014441	lsm8	100	96.875	Neolamprologus_brichardi
ENSDARG00000091656	lsm8	100	91.667	ENSNLEG00000011768	LSM8	100	91.667	Nomascus_leucogenys
ENSDARG00000091656	lsm8	100	80.208	ENSMEUG00000007801	LSM8	100	80.208	Notamacropus_eugenii
ENSDARG00000091656	lsm8	89	95.294	ENSOPRG00000014809	LSM8	100	95.294	Ochotona_princeps
ENSDARG00000091656	lsm8	90	74.419	ENSODEG00000020290	-	100	74.419	Octodon_degus
ENSDARG00000091656	lsm8	100	91.667	ENSODEG00000000418	-	100	91.667	Octodon_degus
ENSDARG00000091656	lsm8	100	90.625	ENSOANG00000014536	LSM8	100	90.625	Ornithorhynchus_anatinus
ENSDARG00000091656	lsm8	100	90.722	ENSOCUG00000017359	LSM8	100	90.722	Oryctolagus_cuniculus
ENSDARG00000091656	lsm8	100	84.375	ENSORLG00000017432	lsm8	100	84.375	Oryzias_latipes
ENSDARG00000091656	lsm8	100	84.375	ENSORLG00020004376	lsm8	100	84.375	Oryzias_latipes_hni
ENSDARG00000091656	lsm8	100	96.875	ENSORLG00015003757	lsm8	100	96.875	Oryzias_latipes_hsok
ENSDARG00000091656	lsm8	100	82.292	ENSOMEG00000022509	lsm8	100	83.333	Oryzias_melastigma
ENSDARG00000091656	lsm8	100	91.667	ENSOGAG00000013377	LSM8	100	91.667	Otolemur_garnettii
ENSDARG00000091656	lsm8	100	91.667	ENSOARG00000017974	LSM8	100	91.667	Ovis_aries
ENSDARG00000091656	lsm8	78	97.333	ENSPPAG00000043228	-	100	97.333	Pan_paniscus
ENSDARG00000091656	lsm8	100	91.667	ENSPPRG00000006444	LSM8	100	91.667	Panthera_pardus
ENSDARG00000091656	lsm8	100	91.667	ENSPTIG00000004722	LSM8	100	91.667	Panthera_tigris_altaica
ENSDARG00000091656	lsm8	78	97.333	ENSPTRG00000046596	-	100	97.333	Pan_troglodytes
ENSDARG00000091656	lsm8	100	91.667	ENSPANG00000035470	-	100	94.595	Papio_anubis
ENSDARG00000091656	lsm8	100	86.458	ENSPANG00000019395	-	100	86.458	Papio_anubis
ENSDARG00000091656	lsm8	89	95.294	ENSPKIG00000006092	lsm8	86	95.294	Paramormyrops_kingsleyae
ENSDARG00000091656	lsm8	78	97.333	ENSPSIG00000017054	LSM8	100	97.333	Pelodiscus_sinensis
ENSDARG00000091656	lsm8	78	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSDARG00000091656	lsm8	77	94.595	ENSPEMG00000009153	Lsm8	100	94.595	Peromyscus_maniculatus_bairdii
ENSDARG00000091656	lsm8	97	92.473	ENSPCIG00000021467	LSM8	98	92.473	Phascolarctos_cinereus
ENSDARG00000091656	lsm8	100	95.833	ENSPFOG00000012340	lsm8	100	95.833	Poecilia_formosa
ENSDARG00000091656	lsm8	100	87.500	ENSPLAG00000000516	lsm8	100	87.500	Poecilia_latipinna
ENSDARG00000091656	lsm8	100	95.833	ENSPMEG00000022567	lsm8	100	95.833	Poecilia_mexicana
ENSDARG00000091656	lsm8	76	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSDARG00000091656	lsm8	100	91.667	ENSPPYG00000017942	LSM8	100	91.667	Pongo_abelii
ENSDARG00000091656	lsm8	97	72.043	ENSPCOG00000017982	-	97	72.043	Propithecus_coquereli
ENSDARG00000091656	lsm8	100	91.667	ENSPCOG00000003309	-	100	91.667	Propithecus_coquereli
ENSDARG00000091656	lsm8	89	94.118	ENSPVAG00000000990	LSM8	100	94.118	Pteropus_vampyrus
ENSDARG00000091656	lsm8	100	96.875	ENSPNYG00000011448	lsm8	100	96.875	Pundamilia_nyererei
ENSDARG00000091656	lsm8	100	96.875	ENSPNAG00000010252	lsm8	100	96.875	Pygocentrus_nattereri
ENSDARG00000091656	lsm8	100	91.667	ENSRNOG00000058677	Lsm8	100	91.667	Rattus_norvegicus
ENSDARG00000091656	lsm8	100	91.667	ENSRBIG00000032851	LSM8	100	94.595	Rhinopithecus_bieti
ENSDARG00000091656	lsm8	100	91.667	ENSRROG00000039618	LSM8	100	94.595	Rhinopithecus_roxellana
ENSDARG00000091656	lsm8	100	91.667	ENSSBOG00000023223	LSM8	100	94.595	Saimiri_boliviensis_boliviensis
ENSDARG00000091656	lsm8	100	91.667	ENSSHAG00000018435	-	100	91.667	Sarcophilus_harrisii
ENSDARG00000091656	lsm8	100	95.833	ENSSFOG00015004412	lsm8	100	95.833	Scleropages_formosus
ENSDARG00000091656	lsm8	78	94.667	ENSSMAG00000009458	lsm8	100	94.667	Scophthalmus_maximus
ENSDARG00000091656	lsm8	100	96.875	ENSSDUG00000014702	lsm8	100	96.875	Seriola_dumerili
ENSDARG00000091656	lsm8	78	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSDARG00000091656	lsm8	75	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSDARG00000091656	lsm8	100	91.667	ENSSPUG00000017419	LSM8	100	91.667	Sphenodon_punctatus
ENSDARG00000091656	lsm8	100	96.875	ENSSPAG00000021422	lsm8	100	96.875	Stegastes_partitus
ENSDARG00000091656	lsm8	100	91.667	ENSSSCG00000021652	LSM8	100	91.667	Sus_scrofa
ENSDARG00000091656	lsm8	100	92.708	ENSTGUG00000004730	-	100	92.708	Taeniopygia_guttata
ENSDARG00000091656	lsm8	100	91.667	ENSTGUG00000016823	-	100	91.667	Taeniopygia_guttata
ENSDARG00000091656	lsm8	100	96.875	ENSTRUG00000025192	lsm8	100	96.875	Takifugu_rubripes
ENSDARG00000091656	lsm8	100	96.875	ENSTNIG00000002864	lsm8	100	96.875	Tetraodon_nigroviridis
ENSDARG00000091656	lsm8	100	91.667	ENSTTRG00000001023	LSM8	100	91.667	Tursiops_truncatus
ENSDARG00000091656	lsm8	89	95.294	ENSUAMG00000006943	-	89	95.294	Ursus_americanus
ENSDARG00000091656	lsm8	89	95.294	ENSUMAG00000003073	LSM8	90	95.294	Ursus_maritimus
ENSDARG00000091656	lsm8	100	91.667	ENSVPAG00000001530	LSM8	100	91.667	Vicugna_pacos
ENSDARG00000091656	lsm8	78	94.667	ENSVVUG00000013248	-	82	94.667	Vulpes_vulpes
ENSDARG00000091656	lsm8	93	94.382	ENSXETG00000021829	lsm8	92	94.382	Xenopus_tropicalis
ENSDARG00000091656	lsm8	100	93.750	ENSXCOG00000012938	lsm8	100	93.750	Xiphophorus_couchianus
ENSDARG00000091656	lsm8	100	95.833	ENSXMAG00000025919	lsm8	100	95.833	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005688	U6 snRNP	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006397	mRNA processing	27880902.	IMP	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0008380	RNA splicing	27880902.	IMP	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0030217	T cell differentiation	27880902.	IGI	Process
GO:0030217	T cell differentiation	27880902.	IMP	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	IEA	Component