EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000092134 (Gene tree)
Gene ID: 560482
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 26099 bases
Position: chr16:26732086-26758184
Accession: ZDB-GENE-060810-50
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000145152	ResIII	PF04851.15	1.2e-08	1	1
ENSDARP00000113995	ResIII	PF04851.15	2e-08	1	1
ENSDARP00000150108	ResIII	PF04851.15	2e-08	1	1
ENSDARP00000157024	ResIII	PF04851.15	2e-08	1	1
ENSDARP00000153235	ResIII	PF04851.15	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138496	-	3229	XM_683887	ENSDARP00000113995	917 (aa)	XP_688979	E9QHY4
ENSDART00000183257	-	1926	-	ENSDARP00000145152	641 (aa)	-	A0A2R8PW92
ENSDART00000191605	-	2535	-	ENSDARP00000157024	844 (aa)	-	A0A2R8QU18
ENSDART00000185175	-	2571	-	ENSDARP00000153235	856 (aa)	-	A0A2R8QED2
ENSDART00000183552	-	2532	-	ENSDARP00000150108	843 (aa)	-	A0A2R8Q9X3

Gene Model

Click here to download ENSDARG00000092134's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000092134's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000092134	rad54b	88	44.887	ENSDARG00000018623	rad54l	81	44.590
ENSDARG00000092134	rad54b	75	31.478	ENSDARG00000073721	smarcad1b	51	31.810

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000092134	rad54b	99	60.615	ENSG00000265817	FSBP	99	57.981	Homo_sapiens
ENSDARG00000092134	rad54b	99	60.615	ENSG00000197275	RAD54B	99	53.450	Homo_sapiens
ENSDARG00000092134	rad54b	100	60.276	ENSAMEG00000005834	-	100	53.276	Ailuropoda_melanoleuca
ENSDARG00000092134	rad54b	99	68.906	ENSACIG00000013005	rad54b	99	62.809	Amphilophus_citrinellus
ENSDARG00000092134	rad54b	99	68.069	ENSAOCG00000008523	rad54b	99	62.860	Amphiprion_ocellaris
ENSDARG00000092134	rad54b	99	67.863	ENSAPEG00000001673	rad54b	99	62.916	Amphiprion_percula
ENSDARG00000092134	rad54b	99	70.000	ENSATEG00000001527	rad54b	99	64.009	Anabas_testudineus
ENSDARG00000092134	rad54b	99	62.654	ENSAPLG00000014366	-	99	56.082	Anas_platyrhynchos
ENSDARG00000092134	rad54b	99	59.375	ENSACAG00000003671	-	98	57.855	Anolis_carolinensis
ENSDARG00000092134	rad54b	99	58.769	ENSANAG00000019528	-	99	58.896	Aotus_nancymaae
ENSDARG00000092134	rad54b	99	69.688	ENSACLG00000007826	rad54b	99	64.672	Astatotilapia_calliptera
ENSDARG00000092134	rad54b	98	79.905	ENSAMXG00000039985	rad54b	97	78.175	Astyanax_mexicanus
ENSDARG00000092134	rad54b	100	59.908	ENSBTAG00000000632	RAD54B	100	53.275	Bos_taurus
ENSDARG00000092134	rad54b	85	40.000	WBGene00013792	Y116A8C.13	84	35.658	Caenorhabditis_elegans
ENSDARG00000092134	rad54b	99	60.462	ENSCJAG00000000080	-	99	57.909	Callithrix_jacchus
ENSDARG00000092134	rad54b	100	60.890	ENSCAFG00000009179	RAD54B	99	53.182	Canis_familiaris
ENSDARG00000092134	rad54b	100	61.043	ENSCAFG00020012084	-	99	53.290	Canis_lupus_dingo
ENSDARG00000092134	rad54b	100	59.908	ENSCHIG00000008230	-	100	53.275	Capra_hircus
ENSDARG00000092134	rad54b	100	60.522	ENSTSYG00000013234	-	100	53.383	Carlito_syrichta
ENSDARG00000092134	rad54b	99	60.031	ENSCPOG00000011643	-	99	53.433	Cavia_porcellus
ENSDARG00000092134	rad54b	99	60.522	ENSCCAG00000011754	-	99	58.390	Cebus_capucinus
ENSDARG00000092134	rad54b	99	60.555	ENSCATG00000030661	-	99	57.923	Cercocebus_atys
ENSDARG00000092134	rad54b	99	59.601	ENSCLAG00000010476	-	99	53.587	Chinchilla_lanigera
ENSDARG00000092134	rad54b	99	60.555	ENSCSAG00000012712	-	99	53.108	Chlorocebus_sabaeus
ENSDARG00000092134	rad54b	99	62.366	ENSCPBG00000003204	-	98	57.307	Chrysemys_picta_bellii
ENSDARG00000092134	rad54b	99	60.401	ENSCANG00000017939	-	99	57.787	Colobus_angolensis_palliatus
ENSDARG00000092134	rad54b	100	59.385	ENSCGRG00001020184	Rad54b	100	52.915	Cricetulus_griseus_chok1gshd
ENSDARG00000092134	rad54b	100	58.154	ENSCGRG00000016752	Rad54b	100	52.184	Cricetulus_griseus_crigri
ENSDARG00000092134	rad54b	99	67.344	ENSCSEG00000001601	rad54b	99	62.887	Cynoglossus_semilaevis
ENSDARG00000092134	rad54b	99	69.014	ENSCVAG00000009200	rad54b	99	63.678	Cyprinodon_variegatus
ENSDARG00000092134	rad54b	99	61.215	ENSDNOG00000015535	-	99	54.626	Dasypus_novemcinctus
ENSDARG00000092134	rad54b	100	59.908	ENSDORG00000002492	Rad54b	100	53.958	Dipodomys_ordii
ENSDARG00000092134	rad54b	81	64.773	ENSETEG00000010605	-	100	56.274	Echinops_telfairi
ENSDARG00000092134	rad54b	100	52.496	ENSEBUG00000009104	rad54b	99	46.941	Eptatretus_burgeri
ENSDARG00000092134	rad54b	100	59.601	ENSEASG00005004021	-	89	57.644	Equus_asinus_asinus
ENSDARG00000092134	rad54b	100	59.754	ENSECAG00000021949	-	99	54.713	Equus_caballus
ENSDARG00000092134	rad54b	85	49.744	ENSEEUG00000008056	-	72	51.250	Erinaceus_europaeus
ENSDARG00000092134	rad54b	99	67.812	ENSELUG00000009287	rad54b	99	62.724	Esox_lucius
ENSDARG00000092134	rad54b	100	61.137	ENSFCAG00000015513	-	100	57.959	Felis_catus
ENSDARG00000092134	rad54b	99	62.074	ENSFALG00000005467	-	99	54.784	Ficedula_albicollis
ENSDARG00000092134	rad54b	99	59.815	ENSFDAG00000020541	-	99	52.530	Fukomys_damarensis
ENSDARG00000092134	rad54b	99	66.771	ENSFHEG00000014382	rad54b	86	66.924	Fundulus_heteroclitus
ENSDARG00000092134	rad54b	99	68.062	ENSGMOG00000014774	rad54b	99	66.291	Gadus_morhua
ENSDARG00000092134	rad54b	99	62.212	ENSGALG00000043597	RAD54B	99	55.037	Gallus_gallus
ENSDARG00000092134	rad54b	99	68.545	ENSGAFG00000007901	rad54b	99	63.751	Gambusia_affinis
ENSDARG00000092134	rad54b	99	69.470	ENSGACG00000009128	rad54b	99	62.297	Gasterosteus_aculeatus
ENSDARG00000092134	rad54b	99	62.442	ENSGAGG00000018747	-	99	55.357	Gopherus_agassizii
ENSDARG00000092134	rad54b	100	60.429	ENSGGOG00000023516	-	100	53.399	Gorilla_gorilla
ENSDARG00000092134	rad54b	99	69.688	ENSHBUG00000016017	rad54b	99	62.672	Haplochromis_burtoni
ENSDARG00000092134	rad54b	100	59.181	ENSHGLG00000008263	RAD54B	99	52.046	Heterocephalus_glaber_female
ENSDARG00000092134	rad54b	100	58.133	ENSHGLG00100008108	-	99	51.357	Heterocephalus_glaber_male
ENSDARG00000092134	rad54b	99	66.562	ENSHCOG00000004764	rad54b	90	84.615	Hippocampus_comes
ENSDARG00000092134	rad54b	99	79.193	ENSIPUG00000018531	rad54b	99	73.093	Ictalurus_punctatus
ENSDARG00000092134	rad54b	99	60.465	ENSSTOG00000010791	-	99	52.884	Ictidomys_tridecemlineatus
ENSDARG00000092134	rad54b	100	59.969	ENSJJAG00000010314	Rad54b	86	58.020	Jaculus_jaculus
ENSDARG00000092134	rad54b	99	67.449	ENSKMAG00000004744	rad54b	99	62.629	Kryptolebias_marmoratus
ENSDARG00000092134	rad54b	99	63.084	ENSLACG00000000859	-	100	61.886	Latimeria_chalumnae
ENSDARG00000092134	rad54b	99	65.644	ENSLOCG00000010100	rad54b	99	60.628	Lepisosteus_oculatus
ENSDARG00000092134	rad54b	100	60.796	ENSLAFG00000015315	-	97	57.196	Loxodonta_africana
ENSDARG00000092134	rad54b	99	60.555	ENSMFAG00000031629	-	99	57.989	Macaca_fascicularis
ENSDARG00000092134	rad54b	99	60.555	ENSMMUG00000005659	-	99	53.217	Macaca_mulatta
ENSDARG00000092134	rad54b	99	60.555	ENSMNEG00000016408	-	99	53.057	Macaca_nemestrina
ENSDARG00000092134	rad54b	99	60.555	ENSMLEG00000006946	-	99	53.217	Mandrillus_leucophaeus
ENSDARG00000092134	rad54b	99	67.388	ENSMAMG00000012269	rad54b	99	62.077	Mastacembelus_armatus
ENSDARG00000092134	rad54b	99	69.797	ENSMZEG00005005281	rad54b	97	67.284	Maylandia_zebra
ENSDARG00000092134	rad54b	99	61.860	ENSMGAG00000012024	-	99	55.195	Meleagris_gallopavo
ENSDARG00000092134	rad54b	100	58.308	ENSMAUG00000013586	Rad54b	100	53.041	Mesocricetus_auratus
ENSDARG00000092134	rad54b	99	59.601	ENSMICG00000000754	-	90	58.008	Microcebus_murinus
ENSDARG00000092134	rad54b	100	59.816	ENSMOCG00000020035	Rad54b	99	52.586	Microtus_ochrogaster
ENSDARG00000092134	rad54b	99	67.863	ENSMMOG00000003394	rad54b	99	62.514	Mola_mola
ENSDARG00000092134	rad54b	99	61.550	ENSMODG00000007343	-	97	58.586	Monodelphis_domestica
ENSDARG00000092134	rad54b	99	66.823	ENSMALG00000001520	rad54b	99	67.293	Monopterus_albus
ENSDARG00000092134	rad54b	100	60.092	MGP_CAROLIEiJ_G0025810	Rad54b	100	53.208	Mus_caroli
ENSDARG00000092134	rad54b	100	59.021	ENSMUSG00000078773	Rad54b	100	52.497	Mus_musculus
ENSDARG00000092134	rad54b	100	59.877	MGP_PahariEiJ_G0023933	Rad54b	100	53.073	Mus_pahari
ENSDARG00000092134	rad54b	100	59.418	MGP_SPRETEiJ_G0026758	Rad54b	100	52.533	Mus_spretus
ENSDARG00000092134	rad54b	100	60.184	ENSMPUG00000008878	-	98	57.143	Mustela_putorius_furo
ENSDARG00000092134	rad54b	100	60.583	ENSMLUG00000008953	-	100	53.521	Myotis_lucifugus
ENSDARG00000092134	rad54b	100	59.604	ENSNGAG00000017537	Rad54b	100	52.614	Nannospalax_galili
ENSDARG00000092134	rad54b	99	70.156	ENSNBRG00000013394	rad54b	99	64.890	Neolamprologus_brichardi
ENSDARG00000092134	rad54b	99	60.462	ENSNLEG00000003062	-	99	57.708	Nomascus_leucogenys
ENSDARG00000092134	rad54b	76	70.661	ENSMEUG00000012426	-	69	61.942	Notamacropus_eugenii
ENSDARG00000092134	rad54b	100	60.215	ENSODEG00000002650	-	93	63.636	Octodon_degus
ENSDARG00000092134	rad54b	100	60.061	ENSODEG00000019564	-	100	52.548	Octodon_degus
ENSDARG00000092134	rad54b	99	70.000	ENSONIG00000006067	rad54b	99	62.778	Oreochromis_niloticus
ENSDARG00000092134	rad54b	100	61.221	ENSOANG00000011348	-	100	59.245	Ornithorhynchus_anatinus
ENSDARG00000092134	rad54b	100	60.429	ENSOCUG00000016478	-	99	54.069	Oryctolagus_cuniculus
ENSDARG00000092134	rad54b	99	69.267	ENSORLG00000008918	rad54b	99	69.051	Oryzias_latipes
ENSDARG00000092134	rad54b	99	69.051	ENSORLG00020012171	rad54b	99	69.051	Oryzias_latipes_hni
ENSDARG00000092134	rad54b	99	69.003	ENSORLG00015018536	rad54b	99	61.684	Oryzias_latipes_hsok
ENSDARG00000092134	rad54b	99	69.531	ENSOMEG00000004345	rad54b	99	68.052	Oryzias_melastigma
ENSDARG00000092134	rad54b	99	59.969	ENSOGAG00000007854	-	99	52.295	Otolemur_garnettii
ENSDARG00000092134	rad54b	100	59.754	ENSOARG00000007691	-	97	57.644	Ovis_aries
ENSDARG00000092134	rad54b	99	58.769	ENSPPAG00000029572	-	99	52.136	Pan_paniscus
ENSDARG00000092134	rad54b	100	60.983	ENSPPRG00000007571	-	100	58.095	Panthera_pardus
ENSDARG00000092134	rad54b	100	60.829	ENSPTIG00000012670	-	100	57.959	Panthera_tigris_altaica
ENSDARG00000092134	rad54b	99	60.462	ENSPTRG00000020427	-	99	57.844	Pan_troglodytes
ENSDARG00000092134	rad54b	99	60.555	ENSPANG00000019566	-	99	53.108	Papio_anubis
ENSDARG00000092134	rad54b	99	66.359	ENSPKIG00000014974	rad54b	89	72.414	Paramormyrops_kingsleyae
ENSDARG00000092134	rad54b	99	61.751	ENSPSIG00000002383	-	98	59.030	Pelodiscus_sinensis
ENSDARG00000092134	rad54b	100	58.679	ENSPEMG00000012133	Rad54b	100	51.934	Peromyscus_maniculatus_bairdii
ENSDARG00000092134	rad54b	99	60.122	ENSPMAG00000002916	rad54b	99	58.209	Petromyzon_marinus
ENSDARG00000092134	rad54b	99	62.597	ENSPCIG00000020151	-	95	58.303	Phascolarctos_cinereus
ENSDARG00000092134	rad54b	99	68.692	ENSPFOG00000023411	rad54b	99	61.774	Poecilia_formosa
ENSDARG00000092134	rad54b	99	69.003	ENSPLAG00000010430	rad54b	99	61.880	Poecilia_latipinna
ENSDARG00000092134	rad54b	99	68.692	ENSPMEG00000016873	rad54b	99	63.521	Poecilia_mexicana
ENSDARG00000092134	rad54b	99	68.799	ENSPREG00000018443	rad54b	99	63.242	Poecilia_reticulata
ENSDARG00000092134	rad54b	99	60.769	ENSPPYG00000018750	-	99	53.661	Pongo_abelii
ENSDARG00000092134	rad54b	99	59.908	ENSPCOG00000026845	-	99	57.708	Propithecus_coquereli
ENSDARG00000092134	rad54b	99	60.676	ENSPVAG00000000261	-	86	57.769	Pteropus_vampyrus
ENSDARG00000092134	rad54b	99	68.281	ENSPNYG00000018303	rad54b	95	67.005	Pundamilia_nyererei
ENSDARG00000092134	rad54b	100	80.835	ENSPNAG00000000295	rad54b	96	80.769	Pygocentrus_nattereri
ENSDARG00000092134	rad54b	100	59.385	ENSRNOG00000039949	Rad54b	100	53.726	Rattus_norvegicus
ENSDARG00000092134	rad54b	99	59.938	ENSRBIG00000020419	-	99	52.169	Rhinopithecus_bieti
ENSDARG00000092134	rad54b	99	59.938	ENSRROG00000039897	-	99	52.169	Rhinopithecus_roxellana
ENSDARG00000092134	rad54b	97	32.796	YBR073W	RDH54	88	34.062	Saccharomyces_cerevisiae
ENSDARG00000092134	rad54b	99	60.522	ENSSBOG00000028501	-	99	53.648	Saimiri_boliviensis_boliviensis
ENSDARG00000092134	rad54b	99	62.791	ENSSHAG00000017038	-	99	54.313	Sarcophilus_harrisii
ENSDARG00000092134	rad54b	90	67.938	ENSSFOG00015008483	rad54b	90	68.467	Scleropages_formosus
ENSDARG00000092134	rad54b	99	69.207	ENSSMAG00000018659	rad54b	99	63.146	Scophthalmus_maximus
ENSDARG00000092134	rad54b	95	70.178	ENSSDUG00000001122	rad54b	96	61.874	Seriola_dumerili
ENSDARG00000092134	rad54b	99	69.579	ENSSLDG00000013787	rad54b	99	61.682	Seriola_lalandi_dorsalis
ENSDARG00000092134	rad54b	99	61.290	ENSSPUG00000016497	-	99	55.889	Sphenodon_punctatus
ENSDARG00000092134	rad54b	99	68.955	ENSSPAG00000012800	rad54b	99	62.754	Stegastes_partitus
ENSDARG00000092134	rad54b	100	60.276	ENSSSCG00000006101	-	98	58.417	Sus_scrofa
ENSDARG00000092134	rad54b	99	61.883	ENSTGUG00000011880	-	88	59.656	Taeniopygia_guttata
ENSDARG00000092134	rad54b	99	68.125	ENSTRUG00000010015	rad54b	99	61.920	Takifugu_rubripes
ENSDARG00000092134	rad54b	100	56.375	ENSTTRG00000006312	-	100	50.587	Tursiops_truncatus
ENSDARG00000092134	rad54b	100	60.429	ENSUMAG00000016401	-	100	53.706	Ursus_maritimus
ENSDARG00000092134	rad54b	100	59.969	ENSVPAG00000003157	-	100	53.961	Vicugna_pacos
ENSDARG00000092134	rad54b	99	51.524	ENSXETG00000025924	rad54b	99	51.810	Xenopus_tropicalis
ENSDARG00000092134	rad54b	99	67.919	ENSXMAG00000013141	rad54b	99	63.481	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component