EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000092584 (Gene tree)
Gene ID: 101886651
Gene Symbol: si:ch1073-385f13.3
Alias: -
Full Name: si:ch1073-385f13.3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 3812 bases
Position: chr25:479997-483808
Accession: ZDB-GENE-131127-357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000095491	RNase_T	PF00929.24	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000104720	-	1331	XM_005174215	ENSDARP00000095491	244 (aa)	XP_005174272	E7FAN2

Gene Model

Click here to download ENSDARG00000092584's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000092584's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000092584	si:ch1073-385f13.3	77	46.809	ENSDARG00000093773	si:ch1073-296i8.2	79	46.809

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000092584	si:ch1073-385f13.3	78	39.912	ENSAOCG00000011593	si:ch1073-296i8.2	81	39.912	Amphiprion_ocellaris
ENSDARG00000092584	si:ch1073-385f13.3	78	40.175	ENSAPEG00000012492	si:ch1073-296i8.2	81	40.175	Amphiprion_percula
ENSDARG00000092584	si:ch1073-385f13.3	78	47.917	ENSATEG00000021547	si:ch1073-296i8.2	74	47.917	Anabas_testudineus
ENSDARG00000092584	si:ch1073-385f13.3	74	50.549	ENSATEG00000021542	si:ch1073-385f13.3	92	50.549	Anabas_testudineus
ENSDARG00000092584	si:ch1073-385f13.3	75	45.109	ENSACLG00000023991	-	55	45.109	Astatotilapia_calliptera
ENSDARG00000092584	si:ch1073-385f13.3	78	32.719	ENSCPBG00000008273	TREX2	77	32.719	Chrysemys_picta_bellii
ENSDARG00000092584	si:ch1073-385f13.3	79	45.876	ENSCVAG00000001533	-	97	45.876	Cyprinodon_variegatus
ENSDARG00000092584	si:ch1073-385f13.3	82	47.500	ENSFHEG00000018188	si:ch1073-296i8.2	80	47.500	Fundulus_heteroclitus
ENSDARG00000092584	si:ch1073-385f13.3	75	45.355	ENSFHEG00000018181	-	91	45.355	Fundulus_heteroclitus
ENSDARG00000092584	si:ch1073-385f13.3	73	45.251	ENSGMOG00000019335	si:ch1073-296i8.2	99	45.251	Gadus_morhua
ENSDARG00000092584	si:ch1073-385f13.3	73	47.222	ENSGMOG00000019565	-	94	47.222	Gadus_morhua
ENSDARG00000092584	si:ch1073-385f13.3	74	50.829	ENSGACG00000007185	si:ch1073-296i8.2	99	50.829	Gasterosteus_aculeatus
ENSDARG00000092584	si:ch1073-385f13.3	79	49.485	ENSHBUG00000007541	si:ch1073-385f13.3	97	49.485	Haplochromis_burtoni
ENSDARG00000092584	si:ch1073-385f13.3	79	44.330	ENSHCOG00000008574	si:ch1073-296i8.2	81	44.330	Hippocampus_comes
ENSDARG00000092584	si:ch1073-385f13.3	75	46.448	ENSKMAG00000015669	-	91	46.448	Kryptolebias_marmoratus
ENSDARG00000092584	si:ch1073-385f13.3	78	48.438	ENSKMAG00000015660	si:ch1073-296i8.2	85	48.438	Kryptolebias_marmoratus
ENSDARG00000092584	si:ch1073-385f13.3	73	49.162	ENSLBEG00000019623	si:ch1073-296i8.2	69	49.162	Labrus_bergylta
ENSDARG00000092584	si:ch1073-385f13.3	77	51.309	ENSLOCG00000014933	-	95	51.309	Lepisosteus_oculatus
ENSDARG00000092584	si:ch1073-385f13.3	75	53.005	ENSMAMG00000023075	si:ch1073-385f13.3	93	53.005	Mastacembelus_armatus
ENSDARG00000092584	si:ch1073-385f13.3	59	49.315	ENSMMOG00000018979	si:ch1073-296i8.2	68	49.315	Mola_mola
ENSDARG00000092584	si:ch1073-385f13.3	75	52.174	ENSMALG00000015952	si:ch1073-385f13.3	93	52.174	Monopterus_albus
ENSDARG00000092584	si:ch1073-385f13.3	79	48.969	ENSONIG00000012794	si:ch1073-385f13.3	97	48.969	Oreochromis_niloticus
ENSDARG00000092584	si:ch1073-385f13.3	75	48.634	ENSORLG00000030645	si:ch1073-385f13.3	81	48.634	Oryzias_latipes
ENSDARG00000092584	si:ch1073-385f13.3	84	45.631	ENSORLG00000023958	si:ch1073-296i8.2	92	45.631	Oryzias_latipes
ENSDARG00000092584	si:ch1073-385f13.3	75	46.995	ENSORLG00020021903	-	92	46.995	Oryzias_latipes_hni
ENSDARG00000092584	si:ch1073-385f13.3	79	47.980	ENSORLG00020021912	si:ch1073-296i8.2	88	47.980	Oryzias_latipes_hni
ENSDARG00000092584	si:ch1073-385f13.3	79	47.692	ENSORLG00015015303	si:ch1073-296i8.2	87	47.692	Oryzias_latipes_hsok
ENSDARG00000092584	si:ch1073-385f13.3	77	46.842	ENSPKIG00000023552	-	87	46.842	Paramormyrops_kingsleyae
ENSDARG00000092584	si:ch1073-385f13.3	74	48.619	ENSPFOG00000021742	-	94	48.619	Poecilia_formosa
ENSDARG00000092584	si:ch1073-385f13.3	73	43.889	ENSPFOG00000005521	si:ch1073-385f13.3	90	43.889	Poecilia_formosa
ENSDARG00000092584	si:ch1073-385f13.3	78	42.188	ENSPMEG00000013096	si:ch1073-385f13.3	96	42.188	Poecilia_mexicana
ENSDARG00000092584	si:ch1073-385f13.3	74	48.619	ENSPMEG00000013087	si:ch1073-385f13.3	93	48.619	Poecilia_mexicana
ENSDARG00000092584	si:ch1073-385f13.3	73	42.029	ENSPREG00000013537	-	78	42.029	Poecilia_reticulata
ENSDARG00000092584	si:ch1073-385f13.3	78	63.158	ENSPNAG00000018956	si:ch1073-385f13.3	100	63.158	Pygocentrus_nattereri
ENSDARG00000092584	si:ch1073-385f13.3	84	48.309	ENSSMAG00000004874	si:ch1073-296i8.2	79	48.309	Scophthalmus_maximus
ENSDARG00000092584	si:ch1073-385f13.3	79	52.577	ENSSLDG00000002379	si:ch1073-385f13.3	97	52.577	Seriola_lalandi_dorsalis
ENSDARG00000092584	si:ch1073-385f13.3	77	48.148	ENSSPAG00000012797	si:ch1073-296i8.2	95	48.148	Stegastes_partitus
ENSDARG00000092584	si:ch1073-385f13.3	73	45.556	ENSTNIG00000010399	si:ch1073-296i8.2	78	45.556	Tetraodon_nigroviridis
ENSDARG00000092584	si:ch1073-385f13.3	78	44.792	ENSXMAG00000021869	si:ch1073-385f13.3	96	44.792	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008296	3'-5'-exodeoxyribonuclease activity	21873635.	IBA	Function