EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000092954 (Gene tree)
Gene ID: 552972
Gene Symbol: mrpl34
Alias: im:6901724|si:dkey-77a20.7
Full Name: mitochondrial ribosomal protein L34
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 2719 bases
Position: chr2:24317465-24320183
Accession: ZDB-GENE-070912-582
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000114531	Ribosomal_L34	PF00468.17	1.5e-18	1	1
ENSDARP00000121717	Ribosomal_L34	PF00468.17	1.5e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000139339	-	937	-	ENSDARP00000121717	121 (aa)	-	E9QEZ5
ENSDART00000136284	-	694	-	ENSDARP00000114531	120 (aa)	-	E9QF21

Gene Model

Click here to download ENSDARG00000092954's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000092954's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000092954	mrpl34	100	55.118	ENSAPOG00000000430	mrpl34	100	51.969	Acanthochromis_polyacanthus
ENSDARG00000092954	mrpl34	100	53.968	ENSACIG00000020814	mrpl34	100	52.800	Amphilophus_citrinellus
ENSDARG00000092954	mrpl34	100	55.118	ENSAOCG00000012210	mrpl34	100	52.756	Amphiprion_ocellaris
ENSDARG00000092954	mrpl34	100	55.118	ENSAPEG00000015541	mrpl34	100	52.756	Amphiprion_percula
ENSDARG00000092954	mrpl34	100	52.381	ENSATEG00000018636	mrpl34	100	50.794	Anabas_testudineus
ENSDARG00000092954	mrpl34	100	54.400	ENSACLG00000008247	mrpl34	59	77.143	Astatotilapia_calliptera
ENSDARG00000092954	mrpl34	100	56.098	ENSAMXG00000038851	mrpl34	55	79.032	Astyanax_mexicanus
ENSDARG00000092954	mrpl34	59	56.000	ENSTSYG00000028788	MRPL34	89	56.000	Carlito_syrichta
ENSDARG00000092954	mrpl34	56	59.701	ENSCPOG00000038177	MRPL34	73	59.701	Cavia_porcellus
ENSDARG00000092954	mrpl34	56	58.209	ENSCLAG00000008278	MRPL34	73	58.209	Chinchilla_lanigera
ENSDARG00000092954	mrpl34	100	53.226	ENSCSEG00000011848	mrpl34	57	69.014	Cynoglossus_semilaevis
ENSDARG00000092954	mrpl34	100	53.659	ENSCVAG00000000584	mrpl34	56	77.612	Cyprinodon_variegatus
ENSDARG00000092954	mrpl34	100	55.814	ENSFHEG00000005603	mrpl34	100	52.713	Fundulus_heteroclitus
ENSDARG00000092954	mrpl34	100	50.781	ENSGAFG00000013133	mrpl34	100	49.612	Gambusia_affinis
ENSDARG00000092954	mrpl34	100	54.400	ENSHBUG00000007862	mrpl34	100	52.846	Haplochromis_burtoni
ENSDARG00000092954	mrpl34	56	62.687	ENSHGLG00000003238	MRPL34	70	62.687	Heterocephalus_glaber_female
ENSDARG00000092954	mrpl34	56	62.687	ENSHGLG00100013043	MRPL34	70	62.687	Heterocephalus_glaber_male
ENSDARG00000092954	mrpl34	100	56.098	ENSHCOG00000013517	mrpl34	100	53.279	Hippocampus_comes
ENSDARG00000092954	mrpl34	99	61.475	ENSIPUG00000008989	mrpl34	91	58.197	Ictalurus_punctatus
ENSDARG00000092954	mrpl34	64	56.250	ENSSTOG00000006247	MRPL34	96	56.962	Ictidomys_tridecemlineatus
ENSDARG00000092954	mrpl34	80	61.000	ENSKMAG00000015523	mrpl34	58	72.603	Kryptolebias_marmoratus
ENSDARG00000092954	mrpl34	100	50.000	ENSLBEG00000013200	mrpl34	100	48.413	Labrus_bergylta
ENSDARG00000092954	mrpl34	88	54.955	ENSLACG00000008896	MRPL34	54	80.000	Latimeria_chalumnae
ENSDARG00000092954	mrpl34	100	50.806	ENSMAMG00000005626	mrpl34	57	70.423	Mastacembelus_armatus
ENSDARG00000092954	mrpl34	100	54.400	ENSMZEG00005004188	mrpl34	100	52.846	Maylandia_zebra
ENSDARG00000092954	mrpl34	78	50.000	ENSMAUG00000001884	Mrpl34	55	72.549	Mesocricetus_auratus
ENSDARG00000092954	mrpl34	100	55.285	ENSMMOG00000006218	mrpl34	59	71.831	Mola_mola
ENSDARG00000092954	mrpl34	100	50.806	ENSMALG00000000991	mrpl34	57	69.014	Monopterus_albus
ENSDARG00000092954	mrpl34	78	50.000	ENSMUSG00000034880	Mrpl34	61	69.643	Mus_musculus
ENSDARG00000092954	mrpl34	78	50.000	MGP_SPRETEiJ_G0032304	Mrpl34	61	69.643	Mus_spretus
ENSDARG00000092954	mrpl34	100	54.400	ENSNBRG00000001737	mrpl34	100	52.846	Neolamprologus_brichardi
ENSDARG00000092954	mrpl34	56	58.209	ENSODEG00000001492	MRPL34	73	58.209	Octodon_degus
ENSDARG00000092954	mrpl34	100	53.600	ENSONIG00000010523	mrpl34	57	75.714	Oreochromis_niloticus
ENSDARG00000092954	mrpl34	75	56.667	ENSOANG00000011901	-	77	66.667	Ornithorhynchus_anatinus
ENSDARG00000092954	mrpl34	100	54.918	ENSORLG00000008708	mrpl34	64	70.667	Oryzias_latipes
ENSDARG00000092954	mrpl34	100	55.738	ENSORLG00020013107	mrpl34	64	70.667	Oryzias_latipes_hni
ENSDARG00000092954	mrpl34	100	54.918	ENSORLG00015009033	mrpl34	64	70.667	Oryzias_latipes_hsok
ENSDARG00000092954	mrpl34	94	56.522	ENSOMEG00000005718	mrpl34	59	75.362	Oryzias_melastigma
ENSDARG00000092954	mrpl34	51	72.727	ENSPSIG00000001128	MRPL34	96	72.727	Pelodiscus_sinensis
ENSDARG00000092954	mrpl34	100	55.645	ENSPMGG00000014379	mrpl34	58	71.831	Periophthalmus_magnuspinnatus
ENSDARG00000092954	mrpl34	100	53.968	ENSPFOG00000001683	MRPL34	58	71.233	Poecilia_formosa
ENSDARG00000092954	mrpl34	100	53.968	ENSPLAG00000016453	mrpl34	58	71.233	Poecilia_latipinna
ENSDARG00000092954	mrpl34	100	53.968	ENSPMEG00000013867	MRPL34	58	71.233	Poecilia_mexicana
ENSDARG00000092954	mrpl34	100	53.600	ENSPREG00000008577	mrpl34	100	51.639	Poecilia_reticulata
ENSDARG00000092954	mrpl34	100	54.839	ENSPNYG00000002734	mrpl34	57	77.143	Pundamilia_nyererei
ENSDARG00000092954	mrpl34	58	73.611	ENSPNAG00000019266	mrpl34	77	73.611	Pygocentrus_nattereri
ENSDARG00000092954	mrpl34	82	57.143	ENSSFOG00015007528	MRPL34	66	57.143	Scleropages_formosus
ENSDARG00000092954	mrpl34	100	54.762	ENSSMAG00000006005	mrpl34	100	53.175	Scophthalmus_maximus
ENSDARG00000092954	mrpl34	100	54.688	ENSSDUG00000012419	mrpl34	100	53.175	Seriola_dumerili
ENSDARG00000092954	mrpl34	100	54.688	ENSSLDG00000021585	mrpl34	100	53.175	Seriola_lalandi_dorsalis
ENSDARG00000092954	mrpl34	100	57.258	ENSSPAG00000000276	mrpl34	100	55.118	Stegastes_partitus
ENSDARG00000092954	mrpl34	58	73.239	ENSTRUG00000024533	mrpl34	58	73.239	Takifugu_rubripes
ENSDARG00000092954	mrpl34	58	73.239	ENSTNIG00000011052	mrpl34	60	73.239	Tetraodon_nigroviridis
ENSDARG00000092954	mrpl34	100	54.400	ENSXCOG00000007225	mrpl34	100	52.459	Xiphophorus_couchianus
ENSDARG00000092954	mrpl34	100	55.039	ENSXMAG00000021725	MRPL34	100	51.938	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005762	mitochondrial large ribosomal subunit	21873635.	IBA	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process