EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000093672 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171435
Alias: -
Full Name: zgc:171435
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3609 bases
Position: chr22:2390544-2394152
Accession: ZDB-GENE-080305-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121045	zf-C2H2	PF00096.26	5.5e-18	1	3
ENSDARP00000121045	zf-C2H2	PF00096.26	5.5e-18	2	3
ENSDARP00000121045	zf-C2H2	PF00096.26	5.5e-18	3	3
ENSDARP00000122961	zf-C2H2	PF00096.26	3.9e-12	1	2
ENSDARP00000122961	zf-C2H2	PF00096.26	3.9e-12	2	2
ENSDARP00000121045	zf-met	PF12874.7	7.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000147345	-	569	XM_017353101	ENSDARP00000121045	122 (aa)	XP_017208590	A8DZB2
ENSDART00000133611	-	453	-	ENSDARP00000122961	109 (aa)	-	A8DZB3

Gene Model

Click here to download ENSDARG00000093672's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000093672's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000093672	zgc:171435	100	63.793	ENSDARG00000092246	si:dkey-20i20.3	83	58.647
ENSDARG00000093672	zgc:171435	100	64.957	ENSDARG00000101425	si:dkey-1b17.5	69	56.618
ENSDARG00000093672	zgc:171435	100	59.292	ENSDARG00000095397	znf1170	100	60.938
ENSDARG00000093672	zgc:171435	100	71.552	ENSDARG00000099618	si:dkey-1b17.6	84	68.571
ENSDARG00000093672	zgc:171435	51	58.182	ENSDARG00000095332	si:dkey-14d8.1	70	56.897
ENSDARG00000093672	zgc:171435	100	69.231	ENSDARG00000071833	znf1162	89	61.765
ENSDARG00000093672	zgc:171435	100	67.521	ENSDARG00000102053	znf1164	100	66.087
ENSDARG00000093672	zgc:171435	100	59.804	ENSDARG00000077085	zgc:110821	83	61.538
ENSDARG00000093672	zgc:171435	99	67.890	ENSDARG00000092088	si:dkey-4c15.8	99	69.159
ENSDARG00000093672	zgc:171435	100	67.544	ENSDARG00000094736	znf1157	95	67.544
ENSDARG00000093672	zgc:171435	100	64.103	ENSDARG00000095704	si:dkey-4c15.13	95	64.348
ENSDARG00000093672	zgc:171435	100	58.974	ENSDARG00000092027	si:dkey-20i20.9	73	64.957
ENSDARG00000093672	zgc:171435	100	64.957	ENSDARG00000093875	zgc:174224	71	63.636
ENSDARG00000093672	zgc:171435	95	61.607	ENSDARG00000098898	si:ch211-255f4.2	91	53.676
ENSDARG00000093672	zgc:171435	100	62.393	ENSDARG00000094343	si:dkey-20i20.8	79	53.086
ENSDARG00000093672	zgc:171435	100	63.248	ENSDARG00000014775	zgc:113220	70	58.519

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000093672	zgc:171435	69	50.000	ENSORLG00020019341	-	61	60.000	Oryzias_latipes_hni
ENSDARG00000093672	zgc:171435	100	49.091	ENSSDUG00000008682	-	100	49.091	Seriola_dumerili