EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000093773 (Gene tree)
Gene ID: 100005742
Gene Symbol: si:ch1073-296i8.2
Alias: -
Full Name: si:ch1073-296i8.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11559 bases
Position: chr25:3047129-3058687
Accession: ZDB-GENE-110411-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121169	RNase_T	PF00929.24	4.9e-09	1	1
ENSDARP00000124702	RNase_T	PF00929.24	4.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137950	-	922	XM_002666783	ENSDARP00000121169	235 (aa)	XP_002666829	F1R5B7
ENSDART00000149117	-	1200	-	ENSDARP00000124702	235 (aa)	-	F1R5B7

Gene Model

Click here to download ENSDARG00000093773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000093773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000093773	si:ch1073-296i8.2	79	46.809	ENSDARG00000092584	si:ch1073-385f13.3	77	46.809

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000093773	si:ch1073-296i8.2	81	54.185	ENSAOCG00000011593	si:ch1073-296i8.2	81	54.185	Amphiprion_ocellaris
ENSDARG00000093773	si:ch1073-296i8.2	81	53.947	ENSAPEG00000012492	si:ch1073-296i8.2	81	53.947	Amphiprion_percula
ENSDARG00000093773	si:ch1073-296i8.2	96	56.522	ENSATEG00000021547	si:ch1073-296i8.2	90	56.522	Anabas_testudineus
ENSDARG00000093773	si:ch1073-296i8.2	78	48.108	ENSATEG00000021542	si:ch1073-385f13.3	94	48.108	Anabas_testudineus
ENSDARG00000093773	si:ch1073-296i8.2	81	45.833	ENSACLG00000023991	-	56	45.833	Astatotilapia_calliptera
ENSDARG00000093773	si:ch1073-296i8.2	70	30.412	ENSCLAG00000002698	TREX2	79	30.412	Chinchilla_lanigera
ENSDARG00000093773	si:ch1073-296i8.2	78	45.946	ENSCVAG00000001533	-	93	45.946	Cyprinodon_variegatus
ENSDARG00000093773	si:ch1073-296i8.2	95	57.143	ENSFHEG00000018188	si:ch1073-296i8.2	91	57.143	Fundulus_heteroclitus
ENSDARG00000093773	si:ch1073-296i8.2	80	45.263	ENSFHEG00000018181	-	95	45.263	Fundulus_heteroclitus
ENSDARG00000093773	si:ch1073-296i8.2	77	48.901	ENSGMOG00000019565	-	95	48.901	Gadus_morhua
ENSDARG00000093773	si:ch1073-296i8.2	74	63.218	ENSGMOG00000019335	si:ch1073-296i8.2	98	63.218	Gadus_morhua
ENSDARG00000093773	si:ch1073-296i8.2	74	66.667	ENSGACG00000007185	si:ch1073-296i8.2	97	66.667	Gasterosteus_aculeatus
ENSDARG00000093773	si:ch1073-296i8.2	78	48.649	ENSHBUG00000007541	si:ch1073-385f13.3	93	48.649	Haplochromis_burtoni
ENSDARG00000093773	si:ch1073-296i8.2	87	55.122	ENSHCOG00000008574	si:ch1073-296i8.2	86	55.122	Hippocampus_comes
ENSDARG00000093773	si:ch1073-296i8.2	83	61.856	ENSKMAG00000015660	si:ch1073-296i8.2	87	61.856	Kryptolebias_marmoratus
ENSDARG00000093773	si:ch1073-296i8.2	77	47.253	ENSKMAG00000015669	-	91	47.253	Kryptolebias_marmoratus
ENSDARG00000093773	si:ch1073-296i8.2	90	51.376	ENSLBEG00000019623	si:ch1073-296i8.2	85	51.376	Labrus_bergylta
ENSDARG00000093773	si:ch1073-296i8.2	79	55.376	ENSLOCG00000014933	-	93	55.376	Lepisosteus_oculatus
ENSDARG00000093773	si:ch1073-296i8.2	76	49.444	ENSMAMG00000023075	si:ch1073-385f13.3	92	49.444	Mastacembelus_armatus
ENSDARG00000093773	si:ch1073-296i8.2	65	60.784	ENSMMOG00000018979	si:ch1073-296i8.2	72	60.784	Mola_mola
ENSDARG00000093773	si:ch1073-296i8.2	79	47.594	ENSMALG00000015952	si:ch1073-385f13.3	95	47.594	Monopterus_albus
ENSDARG00000093773	si:ch1073-296i8.2	78	48.649	ENSONIG00000012794	si:ch1073-385f13.3	93	48.649	Oreochromis_niloticus
ENSDARG00000093773	si:ch1073-296i8.2	80	58.201	ENSORLG00000023958	si:ch1073-296i8.2	86	58.201	Oryzias_latipes
ENSDARG00000093773	si:ch1073-296i8.2	78	46.486	ENSORLG00000030645	si:ch1073-385f13.3	83	46.486	Oryzias_latipes
ENSDARG00000093773	si:ch1073-296i8.2	83	58.462	ENSORLG00020021912	si:ch1073-296i8.2	88	58.462	Oryzias_latipes_hni
ENSDARG00000093773	si:ch1073-296i8.2	78	47.849	ENSORLG00020021903	-	94	47.849	Oryzias_latipes_hni
ENSDARG00000093773	si:ch1073-296i8.2	80	59.259	ENSORLG00015015303	si:ch1073-296i8.2	86	59.259	Oryzias_latipes_hsok
ENSDARG00000093773	si:ch1073-296i8.2	80	45.503	ENSPKIG00000023552	-	88	45.503	Paramormyrops_kingsleyae
ENSDARG00000093773	si:ch1073-296i8.2	74	48.571	ENSPFOG00000021742	-	91	48.571	Poecilia_formosa
ENSDARG00000093773	si:ch1073-296i8.2	79	43.085	ENSPFOG00000005521	si:ch1073-385f13.3	95	43.085	Poecilia_formosa
ENSDARG00000093773	si:ch1073-296i8.2	74	48.571	ENSPMEG00000013087	si:ch1073-385f13.3	90	48.571	Poecilia_mexicana
ENSDARG00000093773	si:ch1073-296i8.2	79	43.085	ENSPMEG00000013096	si:ch1073-385f13.3	94	43.085	Poecilia_mexicana
ENSDARG00000093773	si:ch1073-296i8.2	74	40.099	ENSPREG00000013537	-	76	40.099	Poecilia_reticulata
ENSDARG00000093773	si:ch1073-296i8.2	79	51.351	ENSPNAG00000018956	si:ch1073-385f13.3	98	51.351	Pygocentrus_nattereri
ENSDARG00000093773	si:ch1073-296i8.2	77	30.000	ENSRNOG00000056983	Trex2	86	30.000	Rattus_norvegicus
ENSDARG00000093773	si:ch1073-296i8.2	95	56.769	ENSSMAG00000004874	si:ch1073-296i8.2	88	57.205	Scophthalmus_maximus
ENSDARG00000093773	si:ch1073-296i8.2	78	47.568	ENSSLDG00000002379	si:ch1073-385f13.3	93	47.568	Seriola_lalandi_dorsalis
ENSDARG00000093773	si:ch1073-296i8.2	82	63.542	ENSSPAG00000012797	si:ch1073-296i8.2	98	63.542	Stegastes_partitus
ENSDARG00000093773	si:ch1073-296i8.2	80	59.574	ENSTNIG00000010399	si:ch1073-296i8.2	84	58.854	Tetraodon_nigroviridis
ENSDARG00000093773	si:ch1073-296i8.2	79	44.149	ENSXMAG00000021869	si:ch1073-385f13.3	94	44.149	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008296	3'-5'-exodeoxyribonuclease activity	21873635.	IBA	Function