EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000094196 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-27d5.10
Alias: -
Full Name: si:dkey-27d5.10
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1968 bases
Position: chr11:12392715-12394682
Accession: ZDB-GENE-141216-46
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121638	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140221	-	834	-	ENSDARP00000121638	277 (aa)	-	F1R5U9
ENSDART00000172447	-	1017	-	ENSDARP00000132918	174 (aa)	-	A0A0N4STV5

Gene Model

Click here to download ENSDARG00000094196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000094196's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000094196	si:dkey-27d5.10	100	95.683	ENSDARG00000100754	CR450764.1	100	95.683
ENSDARG00000094196	si:dkey-27d5.10	100	94.964	ENSDARG00000113994	zgc:174354	100	94.964
ENSDARG00000094196	si:dkey-27d5.10	100	95.324	ENSDARG00000094335	si:dkey-23f9.12	100	95.324
ENSDARG00000094196	si:dkey-27d5.10	100	95.324	ENSDARG00000112365	zgc:174353	100	95.324
ENSDARG00000094196	si:dkey-27d5.10	100	94.964	ENSDARG00000110591	si:dkey-27d5.6	100	94.964
ENSDARG00000094196	si:dkey-27d5.10	100	96.029	ENSDARG00000113889	zgc:174355	100	96.029
ENSDARG00000094196	si:dkey-27d5.10	100	95.324	ENSDARG00000115079	zgc:174353	100	95.324
ENSDARG00000094196	si:dkey-27d5.10	100	95.324	ENSDARG00000111826	zgc:174354	100	95.324
ENSDARG00000094196	si:dkey-27d5.10	100	95.324	ENSDARG00000088552	si:dkey-23f9.13	100	95.324
ENSDARG00000094196	si:dkey-27d5.10	100	95.307	ENSDARG00000116389	CR450764.8	100	95.307
ENSDARG00000094196	si:dkey-27d5.10	100	94.604	ENSDARG00000070812	si:ch211-156l18.6	100	94.604

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000094196	si:dkey-27d5.10	79	35.498	WBGene00009477	rbpl-1	51	31.606	Caenorhabditis_elegans
ENSDARG00000094196	si:dkey-27d5.10	71	36.283	ENSCING00000017248	-	99	35.841	Ciona_intestinalis
ENSDARG00000094196	si:dkey-27d5.10	69	37.264	ENSCSAVG00000002639	-	100	37.264	Ciona_savignyi
ENSDARG00000094196	si:dkey-27d5.10	84	50.847	ENSGMOG00000004819	-	99	50.847	Gadus_morhua
ENSDARG00000094196	si:dkey-27d5.10	50	46.763	ENSGACG00000016781	-	51	47.154	Gasterosteus_aculeatus
ENSDARG00000094196	si:dkey-27d5.10	80	38.017	ENSLBEG00000021906	-	100	39.496	Labrus_bergylta
ENSDARG00000094196	si:dkey-27d5.10	51	47.143	ENSONIG00000015704	-	55	48.462	Oreochromis_niloticus
ENSDARG00000094196	si:dkey-27d5.10	84	50.207	ENSPFOG00000022154	-	59	49.367	Poecilia_formosa
ENSDARG00000094196	si:dkey-27d5.10	50	48.571	ENSSMAG00000008324	-	55	51.562	Scophthalmus_maximus
ENSDARG00000094196	si:dkey-27d5.10	51	45.390	ENSTNIG00000005451	-	51	46.341	Tetraodon_nigroviridis