EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000096528 (Gene tree)
Gene ID: 792701
Gene Symbol: si:ch73-236c18.9
Alias: -
Full Name: si:ch73-236c18.9
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4510 bases
Position: chr1:58608978-58613487
Accession: ZDB-GENE-121214-125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	1	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	2	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	3	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	4	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	5	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	6	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	7	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	8	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	9	10
ENSDARP00000155888	zf-C2H2	PF00096.26	5e-48	10	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	1	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	2	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	3	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	4	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	5	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	6	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	7	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	8	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	9	10
ENSDARP00000126981	zf-C2H2	PF00096.26	5.5e-48	10	10
ENSDARP00000155888	zf-met	PF12874.7	7.7e-12	1	2
ENSDARP00000155888	zf-met	PF12874.7	7.7e-12	2	2
ENSDARP00000126981	zf-met	PF12874.7	8.4e-12	1	2
ENSDARP00000126981	zf-met	PF12874.7	8.4e-12	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000186199	-	1895	XM_017355858	ENSDARP00000155888	520 (aa)	XP_017211347	A0A2R8QRR4
ENSDART00000152744	-	2138	-	ENSDARP00000126981	524 (aa)	-	F1QYQ6

Gene Model

Click here to download ENSDARG00000096528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000096528's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000096528	si:ch73-236c18.9	100	74.088	ENSDARG00000104807	si:ch73-221f6.3	100	75.096
ENSDARG00000096528	si:ch73-236c18.9	100	76.245	ENSDARG00000104904	si:ch73-221f6.1	100	75.862
ENSDARG00000096528	si:ch73-236c18.9	98	69.112	ENSDARG00000090836	si:ch211-191d2.2	100	71.236
ENSDARG00000096528	si:ch73-236c18.9	99	72.394	ENSDARG00000104783	si:ch73-221f6.4	99	72.201
ENSDARG00000096528	si:ch73-236c18.9	77	38.835	ENSDARG00000095332	si:dkey-14d8.1	57	40.234
ENSDARG00000096528	si:ch73-236c18.9	88	45.401	ENSDARG00000105295	LO017784.1	64	43.408

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000096528	si:ch73-236c18.9	63	36.546	ENSMZEG00005010497	-	52	36.546	Maylandia_zebra
ENSDARG00000096528	si:ch73-236c18.9	71	44.545	ENSPFOG00000023671	-	61	44.545	Poecilia_formosa
ENSDARG00000096528	si:ch73-236c18.9	71	44.545	ENSPLAG00000006191	-	61	44.545	Poecilia_latipinna
ENSDARG00000096528	si:ch73-236c18.9	78	44.545	ENSPMEG00000014783	-	52	44.545	Poecilia_mexicana
ENSDARG00000096528	si:ch73-236c18.9	68	43.636	ENSPREG00000016186	-	61	43.636	Poecilia_reticulata
ENSDARG00000096528	si:ch73-236c18.9	61	49.010	ENSPNAG00000007266	-	100	47.186	Pygocentrus_nattereri
ENSDARG00000096528	si:ch73-236c18.9	71	44.545	ENSXMAG00000025644	-	73	44.545	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function