EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000096614 (Gene tree)
Gene ID: 794198
Gene Symbol: si:dkey-182i3.10
Alias: -
Full Name: si:dkey-182i3.10
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8019 bases
Position: chr15:23534126-23542144
Accession: ZDB-GENE-121214-231
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	1	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	2	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	3	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	4	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	5	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	6	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	7	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	8	9
ENSDARP00000126628	zf-C2H2	PF00096.26	1.9e-44	9	9
ENSDARP00000126628	zf-met	PF12874.7	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152320	-	2826	XM_017351178	ENSDARP00000126628	624 (aa)	XP_017206667	R4GDS2

Gene Model

Click here to download ENSDARG00000096614's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000096614's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000096614	si:dkey-182i3.10	74	39.175	ENSDARG00000101562	znf1014	98	36.893
ENSDARG00000096614	si:dkey-182i3.10	99	33.934	ENSDARG00000075834	si:dkey-182i3.8	94	48.837
ENSDARG00000096614	si:dkey-182i3.10	67	38.588	ENSDARG00000096575	si:dkey-182i3.9	99	38.876
ENSDARG00000096614	si:dkey-182i3.10	74	41.964	ENSDARG00000012642	si:ch211-266d19.4	93	46.000
ENSDARG00000096614	si:dkey-182i3.10	74	37.317	ENSDARG00000058562	znf991	93	37.317
ENSDARG00000096614	si:dkey-182i3.10	68	34.831	ENSDARG00000057238	si:dkey-30k6.5	98	33.621
ENSDARG00000096614	si:dkey-182i3.10	70	41.192	ENSDARG00000091679	FO704858.1	99	41.192
ENSDARG00000096614	si:dkey-182i3.10	69	36.574	ENSDARG00000098248	CABZ01081730.1	96	38.398
ENSDARG00000096614	si:dkey-182i3.10	73	36.889	ENSDARG00000102959	zgc:171220	86	37.713
ENSDARG00000096614	si:dkey-182i3.10	67	40.489	ENSDARG00000099731	CABZ01066719.1	95	39.560
ENSDARG00000096614	si:dkey-182i3.10	99	48.780	ENSDARG00000099986	si:ch211-207i20.2	62	38.107
ENSDARG00000096614	si:dkey-182i3.10	70	37.615	ENSDARG00000100803	zgc:173517	97	38.843

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000096614	si:dkey-182i3.10	68	40.482	ENSACAG00000026916	-	79	39.247	Anolis_carolinensis
ENSDARG00000096614	si:dkey-182i3.10	99	37.500	ENSAMXG00000038122	-	94	53.012	Astyanax_mexicanus
ENSDARG00000096614	si:dkey-182i3.10	66	38.674	ENSELUG00000013806	-	62	38.674	Esox_lucius
ENSDARG00000096614	si:dkey-182i3.10	68	36.923	ENSELUG00000018970	-	92	40.000	Esox_lucius
ENSDARG00000096614	si:dkey-182i3.10	68	44.366	ENSELUG00000000485	-	89	44.366	Esox_lucius
ENSDARG00000096614	si:dkey-182i3.10	66	42.326	ENSMGAG00000016603	-	100	30.337	Meleagris_gallopavo
ENSDARG00000096614	si:dkey-182i3.10	66	43.434	ENSPNAG00000009184	-	83	43.434	Pygocentrus_nattereri
ENSDARG00000096614	si:dkey-182i3.10	76	43.836	ENSPNAG00000009176	-	89	41.990	Pygocentrus_nattereri
ENSDARG00000096614	si:dkey-182i3.10	69	36.782	ENSTNIG00000002343	-	81	37.168	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function