EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000096828 (Gene tree)
Gene ID: 555336
Gene Symbol: si:ch73-144d13.7
Alias: -
Full Name: si:ch73-144d13.7
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6569 bases
Position: chr15:611229-617797
Accession: ZDB-GENE-131127-29
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	1	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	2	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	3	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	4	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	5	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	6	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	7	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	8	9
ENSDARP00000127953	zf-C2H2	PF00096.26	3.2e-49	9	9
ENSDARP00000127953	zf-met	PF12874.7	3.2e-18	1	2
ENSDARP00000127953	zf-met	PF12874.7	3.2e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000154224	-	1194	XM_017351129	ENSDARP00000127953	332 (aa)	XP_017206618	X1WCK9

Gene Model

Click here to download ENSDARG00000096828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000096828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000096828	si:ch73-144d13.7	90	49.315	ENSDARG00000098324	si:cabz01054394.6	98	49.363
ENSDARG00000096828	si:ch73-144d13.7	99	50.769	ENSDARG00000110658	zgc:174696	99	50.769
ENSDARG00000096828	si:ch73-144d13.7	98	44.954	ENSDARG00000114793	CU182823.4	98	44.954
ENSDARG00000096828	si:ch73-144d13.7	98	50.735	ENSDARG00000074298	znf1015	100	51.562
ENSDARG00000096828	si:ch73-144d13.7	98	51.613	ENSDARG00000089715	si:cabz01054394.7	95	51.613
ENSDARG00000096828	si:ch73-144d13.7	97	53.448	ENSDARG00000100509	si:dkey-82i20.2	100	53.448
ENSDARG00000096828	si:ch73-144d13.7	98	51.724	ENSDARG00000098536	si:dkey-25i10.1	100	51.724
ENSDARG00000096828	si:ch73-144d13.7	98	47.126	ENSDARG00000103721	si:dkey-122c11.7	99	45.897
ENSDARG00000096828	si:ch73-144d13.7	98	52.802	ENSDARG00000101137	znf999	100	51.429
ENSDARG00000096828	si:ch73-144d13.7	99	43.976	ENSDARG00000101134	CABZ01064859.2	97	43.976
ENSDARG00000096828	si:ch73-144d13.7	98	45.566	ENSDARG00000112103	si:dkey-16p19.1	99	49.180
ENSDARG00000096828	si:ch73-144d13.7	99	43.452	ENSDARG00000113808	si:dkeyp-82b4.6	99	43.452
ENSDARG00000096828	si:ch73-144d13.7	98	46.789	ENSDARG00000102791	zgc:174704	99	46.789
ENSDARG00000096828	si:ch73-144d13.7	98	51.703	ENSDARG00000075417	zgc:175107	98	51.703
ENSDARG00000096828	si:ch73-144d13.7	98	52.212	ENSDARG00000091994	znf1048	99	52.212
ENSDARG00000096828	si:ch73-144d13.7	98	47.095	ENSDARG00000098087	si:dkey-30f3.2	99	47.095
ENSDARG00000096828	si:ch73-144d13.7	98	47.674	ENSDARG00000096856	znf1012	99	47.674
ENSDARG00000096828	si:ch73-144d13.7	98	52.507	ENSDARG00000098986	znf1040	99	52.507
ENSDARG00000096828	si:ch73-144d13.7	96	46.483	ENSDARG00000102008	si:dkey-72l17.6	99	46.483
ENSDARG00000096828	si:ch73-144d13.7	99	43.182	ENSDARG00000089598	si:cabz01054396.2	100	51.579
ENSDARG00000096828	si:ch73-144d13.7	96	48.571	ENSDARG00000102561	AL645691.1	98	50.000
ENSDARG00000096828	si:ch73-144d13.7	97	47.840	ENSDARG00000090942	CABZ01054394.1	98	47.840
ENSDARG00000096828	si:ch73-144d13.7	99	48.980	ENSDARG00000074365	zgc:171901	99	58.929
ENSDARG00000096828	si:ch73-144d13.7	99	49.462	ENSDARG00000101365	si:cabz01021430.2	100	49.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000096828	si:ch73-144d13.7	79	48.198	ENSACIG00000009809	si:dkey-77f5.14	81	48.198	Amphilophus_citrinellus
ENSDARG00000096828	si:ch73-144d13.7	70	57.407	ENSCSEG00000021317	-	59	57.407	Cynoglossus_semilaevis
ENSDARG00000096828	si:ch73-144d13.7	98	48.555	ENSCVAG00000010160	-	74	48.555	Cyprinodon_variegatus
ENSDARG00000096828	si:ch73-144d13.7	96	50.420	ENSCVAG00000007169	-	64	50.420	Cyprinodon_variegatus
ENSDARG00000096828	si:ch73-144d13.7	81	46.296	ENSFHEG00000019728	-	96	57.353	Fundulus_heteroclitus
ENSDARG00000096828	si:ch73-144d13.7	89	45.382	ENSFHEG00000013222	-	90	45.382	Fundulus_heteroclitus
ENSDARG00000096828	si:ch73-144d13.7	97	47.685	ENSFHEG00000000842	-	67	44.262	Fundulus_heteroclitus
ENSDARG00000096828	si:ch73-144d13.7	99	41.104	ENSGAFG00000013969	-	91	47.162	Gambusia_affinis
ENSDARG00000096828	si:ch73-144d13.7	69	45.778	ENSGAFG00000013116	-	61	45.778	Gambusia_affinis
ENSDARG00000096828	si:ch73-144d13.7	79	47.083	ENSHBUG00000022073	-	65	47.083	Haplochromis_burtoni
ENSDARG00000096828	si:ch73-144d13.7	85	40.741	ENSHBUG00000022063	-	79	42.857	Haplochromis_burtoni
ENSDARG00000096828	si:ch73-144d13.7	79	40.488	ENSKMAG00000000620	-	56	41.667	Kryptolebias_marmoratus
ENSDARG00000096828	si:ch73-144d13.7	79	48.515	ENSKMAG00000014923	-	55	43.333	Kryptolebias_marmoratus
ENSDARG00000096828	si:ch73-144d13.7	97	38.991	ENSKMAG00000018636	-	95	39.344	Kryptolebias_marmoratus
ENSDARG00000096828	si:ch73-144d13.7	95	49.580	ENSKMAG00000014939	-	50	49.580	Kryptolebias_marmoratus
ENSDARG00000096828	si:ch73-144d13.7	87	48.175	ENSLBEG00000001756	-	78	47.748	Labrus_bergylta
ENSDARG00000096828	si:ch73-144d13.7	97	49.286	ENSLBEG00000011349	-	78	49.286	Labrus_bergylta
ENSDARG00000096828	si:ch73-144d13.7	79	47.347	ENSLBEG00000007251	-	85	46.352	Labrus_bergylta
ENSDARG00000096828	si:ch73-144d13.7	82	48.035	ENSMZEG00005010132	-	51	48.035	Maylandia_zebra
ENSDARG00000096828	si:ch73-144d13.7	85	46.939	ENSNBRG00000024046	-	50	46.939	Neolamprologus_brichardi
ENSDARG00000096828	si:ch73-144d13.7	97	41.593	ENSPMGG00000023410	-	99	39.516	Periophthalmus_magnuspinnatus
ENSDARG00000096828	si:ch73-144d13.7	79	48.400	ENSPFOG00000024469	-	93	44.781	Poecilia_formosa
ENSDARG00000096828	si:ch73-144d13.7	79	46.484	ENSPLAG00000023384	-	85	46.484	Poecilia_latipinna
ENSDARG00000096828	si:ch73-144d13.7	95	45.291	ENSPLAG00000022610	-	75	42.271	Poecilia_latipinna
ENSDARG00000096828	si:ch73-144d13.7	96	52.632	ENSPLAG00000010558	-	69	52.632	Poecilia_latipinna
ENSDARG00000096828	si:ch73-144d13.7	77	47.619	ENSPMEG00000022786	si:dkey-77f5.14	70	47.619	Poecilia_mexicana
ENSDARG00000096828	si:ch73-144d13.7	87	41.048	ENSPMEG00000002966	-	55	40.594	Poecilia_mexicana
ENSDARG00000096828	si:ch73-144d13.7	98	41.729	ENSPREG00000016186	-	60	46.491	Poecilia_reticulata
ENSDARG00000096828	si:ch73-144d13.7	79	48.673	ENSPREG00000019990	-	87	47.200	Poecilia_reticulata
ENSDARG00000096828	si:ch73-144d13.7	75	44.758	ENSPREG00000009121	-	61	44.758	Poecilia_reticulata
ENSDARG00000096828	si:ch73-144d13.7	99	41.935	ENSSFOG00015015958	-	67	41.935	Scleropages_formosus
ENSDARG00000096828	si:ch73-144d13.7	78	52.308	ENSSLDG00000000432	-	82	52.308	Seriola_lalandi_dorsalis
ENSDARG00000096828	si:ch73-144d13.7	80	42.126	ENSSPAG00000004449	-	97	38.312	Stegastes_partitus
ENSDARG00000096828	si:ch73-144d13.7	76	46.245	ENSXCOG00000003896	-	65	46.245	Xiphophorus_couchianus
ENSDARG00000096828	si:ch73-144d13.7	82	42.647	ENSXMAG00000023553	-	65	42.647	Xiphophorus_maculatus
ENSDARG00000096828	si:ch73-144d13.7	98	46.053	ENSXMAG00000023196	-	98	43.357	Xiphophorus_maculatus
ENSDARG00000096828	si:ch73-144d13.7	98	42.241	ENSXMAG00000024737	-	90	41.916	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function