EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000097753 (Gene tree)
Gene ID: 368358
Gene Symbol: slirp
Alias: sb:cb657|si:ch73-276n11.1
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1635 bases
Position: chr17:17763167-17764801
Accession: ZDB-GENE-030729-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000127876	RRM_1	PF00076.22	2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000155261	-	548	-	ENSDARP00000127876	103 (aa)	-	X1WCD3

Gene Model

Click here to download ENSDARG00000097753's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000097753's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000097753	slirp	82	32.911	ENSDARG00000007960	hnrnpaba	62	33.803
ENSDARG00000097753	slirp	86	31.707	ENSDARG00000059246	hnrnpd	51	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000097753	slirp	72	59.459	ENSG00000119705	SLIRP	93	59.155	Homo_sapiens
ENSDARG00000097753	slirp	94	74.227	ENSAPOG00000001298	slirp	94	74.468	Acanthochromis_polyacanthus
ENSDARG00000097753	slirp	68	52.857	ENSAMEG00000003975	SLIRP	77	52.857	Ailuropoda_melanoleuca
ENSDARG00000097753	slirp	95	77.551	ENSACIG00000023083	slirp	93	77.660	Amphilophus_citrinellus
ENSDARG00000097753	slirp	93	77.083	ENSAOCG00000006342	slirp	95	76.596	Amphiprion_ocellaris
ENSDARG00000097753	slirp	93	77.083	ENSAPEG00000015719	-	96	76.596	Amphiprion_percula
ENSDARG00000097753	slirp	93	77.083	ENSAPEG00000015917	slirp	95	76.596	Amphiprion_percula
ENSDARG00000097753	slirp	94	73.196	ENSATEG00000013525	slirp	94	73.404	Anabas_testudineus
ENSDARG00000097753	slirp	94	61.856	ENSAMXG00000018693	slirp	92	63.043	Astyanax_mexicanus
ENSDARG00000097753	slirp	72	60.811	ENSCJAG00000016946	SLIRP	73	58.824	Callithrix_jacchus
ENSDARG00000097753	slirp	72	58.108	ENSCAFG00020015876	-	68	57.333	Canis_lupus_dingo
ENSDARG00000097753	slirp	85	51.111	ENSCCAG00000030130	SLIRP	69	56.000	Cebus_capucinus
ENSDARG00000097753	slirp	74	60.526	ENSCATG00000036327	SLIRP	73	61.765	Cercocebus_atys
ENSDARG00000097753	slirp	72	60.811	ENSCSAG00000011736	SLIRP	69	60.000	Chlorocebus_sabaeus
ENSDARG00000097753	slirp	81	56.627	ENSCPBG00000026327	SLIRP	78	59.740	Chrysemys_picta_bellii
ENSDARG00000097753	slirp	65	62.687	ENSCANG00000032892	SLIRP	69	61.765	Colobus_angolensis_palliatus
ENSDARG00000097753	slirp	69	56.338	ENSCGRG00001024068	Slirp	65	55.556	Cricetulus_griseus_chok1gshd
ENSDARG00000097753	slirp	69	56.338	ENSCGRG00000017440	Slirp	65	55.556	Cricetulus_griseus_crigri
ENSDARG00000097753	slirp	81	56.627	ENSCSEG00000015766	slirp	81	56.250	Cynoglossus_semilaevis
ENSDARG00000097753	slirp	86	77.528	ENSCVAG00000012504	slirp	82	77.907	Cyprinodon_variegatus
ENSDARG00000097753	slirp	72	51.351	ENSDNOG00000007721	SLIRP	68	50.667	Dasypus_novemcinctus
ENSDARG00000097753	slirp	73	53.333	ENSDORG00000012379	Slirp	68	52.632	Dipodomys_ordii
ENSDARG00000097753	slirp	76	57.692	ENSETEG00000010345	SLIRP	73	56.962	Echinops_telfairi
ENSDARG00000097753	slirp	72	58.108	ENSEASG00005020193	SLIRP	68	57.333	Equus_asinus_asinus
ENSDARG00000097753	slirp	80	47.561	ENSEEUG00000007257	SLIRP	71	51.389	Erinaceus_europaeus
ENSDARG00000097753	slirp	91	74.468	ENSELUG00000016800	slirp	90	75.824	Esox_lucius
ENSDARG00000097753	slirp	74	56.579	ENSFCAG00000036326	SLIRP	69	58.824	Felis_catus
ENSDARG00000097753	slirp	76	58.974	ENSFALG00000012583	SLIRP	88	52.688	Ficedula_albicollis
ENSDARG00000097753	slirp	86	50.549	ENSFDAG00000008347	SLIRP	67	53.947	Fukomys_damarensis
ENSDARG00000097753	slirp	73	77.333	ENSFHEG00000004709	slirp	82	77.333	Fundulus_heteroclitus
ENSDARG00000097753	slirp	95	72.449	ENSGMOG00000016948	slirp	89	73.118	Gadus_morhua
ENSDARG00000097753	slirp	89	57.447	ENSGALG00000031238	SLIRP	90	58.427	Gallus_gallus
ENSDARG00000097753	slirp	91	73.404	ENSGAFG00000010998	slirp	91	74.725	Gambusia_affinis
ENSDARG00000097753	slirp	79	75.309	ENSGACG00000020137	slirp	91	76.923	Gasterosteus_aculeatus
ENSDARG00000097753	slirp	96	57.000	ENSGAGG00000009953	SLIRP	65	57.447	Gopherus_agassizii
ENSDARG00000097753	slirp	72	59.459	ENSGGOG00000011059	-	73	60.294	Gorilla_gorilla
ENSDARG00000097753	slirp	69	52.113	ENSHGLG00000018491	SLIRP	65	51.389	Heterocephalus_glaber_female
ENSDARG00000097753	slirp	69	52.113	ENSHGLG00100014153	SLIRP	65	51.389	Heterocephalus_glaber_male
ENSDARG00000097753	slirp	93	79.167	ENSHCOG00000006795	slirp	94	80.645	Hippocampus_comes
ENSDARG00000097753	slirp	91	80.851	ENSIPUG00000010214	SLIRP	91	81.319	Ictalurus_punctatus
ENSDARG00000097753	slirp	73	54.667	ENSSTOG00000034316	SLIRP	68	53.947	Ictidomys_tridecemlineatus
ENSDARG00000097753	slirp	91	65.957	ENSKMAG00000002038	slirp	88	65.934	Kryptolebias_marmoratus
ENSDARG00000097753	slirp	95	67.347	ENSLBEG00000007564	slirp	95	67.368	Labrus_bergylta
ENSDARG00000097753	slirp	91	76.596	ENSLACG00000013434	SLIRP	88	76.923	Latimeria_chalumnae
ENSDARG00000097753	slirp	72	60.811	ENSMFAG00000042960	SLIRP	73	61.765	Macaca_fascicularis
ENSDARG00000097753	slirp	81	57.831	ENSMMUG00000029256	SLIRP	73	61.765	Macaca_mulatta
ENSDARG00000097753	slirp	72	60.811	ENSMNEG00000028921	SLIRP	73	61.765	Macaca_nemestrina
ENSDARG00000097753	slirp	65	62.687	ENSMLEG00000043644	SLIRP	69	61.765	Mandrillus_leucophaeus
ENSDARG00000097753	slirp	93	80.208	ENSMZEG00005004617	slirp	95	79.787	Maylandia_zebra
ENSDARG00000097753	slirp	73	53.333	ENSMAUG00000003857	Slirp	68	52.632	Mesocricetus_auratus
ENSDARG00000097753	slirp	84	52.874	ENSMICG00000012080	SLIRP	79	52.874	Microcebus_murinus
ENSDARG00000097753	slirp	76	52.564	ENSMOCG00000016019	Slirp	70	53.521	Microtus_ochrogaster
ENSDARG00000097753	slirp	94	77.320	ENSMMOG00000018268	slirp	94	78.723	Mola_mola
ENSDARG00000097753	slirp	68	55.714	ENSMODG00000005207	-	99	55.714	Monodelphis_domestica
ENSDARG00000097753	slirp	87	74.444	ENSMALG00000012581	slirp	89	74.713	Monopterus_albus
ENSDARG00000097753	slirp	73	57.333	MGP_CAROLIEiJ_G0017995	Slirp	69	57.333	Mus_caroli
ENSDARG00000097753	slirp	72	58.108	ENSMUSG00000021040	Slirp	72	56.338	Mus_musculus
ENSDARG00000097753	slirp	73	57.333	MGP_SPRETEiJ_G0018840	Slirp	67	57.333	Mus_spretus
ENSDARG00000097753	slirp	93	49.485	ENSMLUG00000029544	-	79	51.136	Myotis_lucifugus
ENSDARG00000097753	slirp	83	52.326	ENSMLUG00000024998	-	77	52.326	Myotis_lucifugus
ENSDARG00000097753	slirp	72	50.000	ENSNGAG00000016363	Slirp	72	49.333	Nannospalax_galili
ENSDARG00000097753	slirp	77	53.165	ENSNLEG00000027238	-	80	55.714	Nomascus_leucogenys
ENSDARG00000097753	slirp	90	48.485	ENSNLEG00000032459	-	73	54.412	Nomascus_leucogenys
ENSDARG00000097753	slirp	72	58.108	ENSODEG00000012580	SLIRP	77	57.746	Octodon_degus
ENSDARG00000097753	slirp	93	79.167	ENSONIG00000011692	slirp	95	78.723	Oreochromis_niloticus
ENSDARG00000097753	slirp	77	65.432	ENSOANG00000022366	SLIRP	73	65.432	Ornithorhynchus_anatinus
ENSDARG00000097753	slirp	98	74.257	ENSORLG00000010761	slirp	74	75.789	Oryzias_latipes
ENSDARG00000097753	slirp	95	74.490	ENSORLG00020022188	slirp	95	74.737	Oryzias_latipes_hni
ENSDARG00000097753	slirp	96	75.758	ENSORLG00015020171	slirp	94	76.842	Oryzias_latipes_hsok
ENSDARG00000097753	slirp	95	77.551	ENSOMEG00000019321	slirp	95	77.895	Oryzias_melastigma
ENSDARG00000097753	slirp	72	59.459	ENSPPAG00000040710	-	73	60.294	Pan_paniscus
ENSDARG00000097753	slirp	74	56.579	ENSPPRG00000014350	SLIRP	69	58.824	Panthera_pardus
ENSDARG00000097753	slirp	74	56.579	ENSPTIG00000014196	SLIRP	69	58.824	Panthera_tigris_altaica
ENSDARG00000097753	slirp	72	59.459	ENSPTRG00000030691	SLIRP	73	60.294	Pan_troglodytes
ENSDARG00000097753	slirp	72	62.162	ENSPANG00000026323	SLIRP	73	63.235	Papio_anubis
ENSDARG00000097753	slirp	76	65.385	ENSPKIG00000008831	slirp	77	65.385	Paramormyrops_kingsleyae
ENSDARG00000097753	slirp	77	79.747	ENSPMGG00000010541	slirp	87	80.263	Periophthalmus_magnuspinnatus
ENSDARG00000097753	slirp	69	57.746	ENSPEMG00000013234	Slirp	70	54.930	Peromyscus_maniculatus_bairdii
ENSDARG00000097753	slirp	77	54.430	ENSPMAG00000009355	slirp	89	53.750	Petromyzon_marinus
ENSDARG00000097753	slirp	80	51.220	ENSPCIG00000026842	-	75	57.143	Phascolarctos_cinereus
ENSDARG00000097753	slirp	91	75.532	ENSPFOG00000006758	slirp	91	75.824	Poecilia_formosa
ENSDARG00000097753	slirp	91	75.532	ENSPLAG00000011140	slirp	91	75.824	Poecilia_latipinna
ENSDARG00000097753	slirp	91	75.532	ENSPMEG00000019535	slirp	91	75.824	Poecilia_mexicana
ENSDARG00000097753	slirp	91	75.532	ENSPREG00000011673	slirp	91	75.824	Poecilia_reticulata
ENSDARG00000097753	slirp	72	63.514	ENSPPYG00000006030	SLIRP	69	62.667	Pongo_abelii
ENSDARG00000097753	slirp	97	41.667	ENSPCOG00000015159	SLIRP	68	57.534	Propithecus_coquereli
ENSDARG00000097753	slirp	94	82.474	ENSPNAG00000008633	slirp	95	82.979	Pygocentrus_nattereri
ENSDARG00000097753	slirp	63	64.615	ENSRBIG00000031396	-	66	63.636	Rhinopithecus_bieti
ENSDARG00000097753	slirp	72	63.514	ENSRBIG00000032222	-	73	63.235	Rhinopithecus_bieti
ENSDARG00000097753	slirp	72	56.757	ENSRBIG00000035817	-	69	56.000	Rhinopithecus_bieti
ENSDARG00000097753	slirp	65	62.687	ENSRBIG00000032998	-	63	61.765	Rhinopithecus_bieti
ENSDARG00000097753	slirp	69	64.789	ENSRROG00000041312	-	73	62.162	Rhinopithecus_roxellana
ENSDARG00000097753	slirp	63	63.077	ENSRROG00000035604	-	66	62.121	Rhinopithecus_roxellana
ENSDARG00000097753	slirp	72	63.514	ENSRROG00000036656	-	73	63.235	Rhinopithecus_roxellana
ENSDARG00000097753	slirp	65	64.179	ENSRROG00000017133	-	71	63.235	Rhinopithecus_roxellana
ENSDARG00000097753	slirp	80	54.444	ENSSBOG00000020014	SLIRP	73	60.294	Saimiri_boliviensis_boliviensis
ENSDARG00000097753	slirp	94	62.887	ENSSFOG00015011165	slirp	95	62.766	Scleropages_formosus
ENSDARG00000097753	slirp	82	52.381	ENSSMAG00000012930	slirp	79	51.852	Scophthalmus_maximus
ENSDARG00000097753	slirp	94	73.196	ENSSDUG00000021883	slirp	62	73.404	Seriola_dumerili
ENSDARG00000097753	slirp	94	73.196	ENSSLDG00000023136	slirp	85	73.404	Seriola_lalandi_dorsalis
ENSDARG00000097753	slirp	95	60.204	ENSSPUG00000009346	SLIRP	88	61.798	Sphenodon_punctatus
ENSDARG00000097753	slirp	95	69.388	ENSSPAG00000013477	slirp	95	69.474	Stegastes_partitus
ENSDARG00000097753	slirp	94	44.860	ENSSSCG00000028167	SLIRP	79	50.000	Sus_scrofa
ENSDARG00000097753	slirp	76	60.256	ENSTGUG00000012337	SLIRP	88	52.688	Taeniopygia_guttata
ENSDARG00000097753	slirp	94	66.327	ENSTRUG00000020127	slirp	94	66.316	Takifugu_rubripes
ENSDARG00000097753	slirp	72	56.757	ENSUAMG00000022445	SLIRP	68	56.000	Ursus_americanus
ENSDARG00000097753	slirp	72	56.757	ENSUMAG00000007166	SLIRP	68	56.000	Ursus_maritimus
ENSDARG00000097753	slirp	74	52.632	ENSVPAG00000001781	SLIRP	70	51.948	Vicugna_pacos
ENSDARG00000097753	slirp	72	56.757	ENSVVUG00000004436	SLIRP	68	56.000	Vulpes_vulpes
ENSDARG00000097753	slirp	78	71.250	ENSXETG00000030343	SLIRP	87	71.429	Xenopus_tropicalis
ENSDARG00000097753	slirp	91	72.340	ENSXCOG00000009422	slirp	91	72.527	Xiphophorus_couchianus
ENSDARG00000097753	slirp	91	74.468	ENSXMAG00000015655	slirp	91	74.725	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000961	negative regulation of mitochondrial RNA catabolic process	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0070584	mitochondrion morphogenesis	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component