EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098324 (Gene tree)
Gene ID: 101885937
Gene Symbol: si:cabz01054394.6
Alias: -
Full Name: si:cabz01054394.6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6545 bases
Position: chr4:72603266-72609810
Accession: ZDB-GENE-161017-112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	1	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	2	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	3	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	4	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	5	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	6	7
ENSDARP00000143106	zf-C2H2	PF00096.26	2.4e-46	7	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	1	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	2	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	3	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	4	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	5	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	6	7
ENSDARP00000133485	zf-C2H2	PF00096.26	3.7e-46	7	7
ENSDARP00000143106	zf-met	PF12874.7	5.1e-06	1	2
ENSDARP00000143106	zf-met	PF12874.7	5.1e-06	2	2
ENSDARP00000133485	zf-met	PF12874.7	7.3e-06	1	2
ENSDARP00000133485	zf-met	PF12874.7	7.3e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159227	-	1914	-	ENSDARP00000133485	414 (aa)	-	A0A0G2KM98
ENSDART00000174299	-	1718	XM_005165007	ENSDARP00000143106	401 (aa)	XP_005165064	A0A1L1QZI6

Gene Model

Click here to download ENSDARG00000098324's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098324's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098324	si:cabz01054394.6	98	49.363	ENSDARG00000096828	si:ch73-144d13.7	90	49.315
ENSDARG00000098324	si:cabz01054394.6	99	36.093	ENSDARG00000008906	si:ch211-241e1.5	93	35.056
ENSDARG00000098324	si:cabz01054394.6	97	39.659	ENSDARG00000101134	CABZ01064859.2	85	43.558
ENSDARG00000098324	si:cabz01054394.6	96	42.661	ENSDARG00000101093	zgc:162971	97	42.767
ENSDARG00000098324	si:cabz01054394.6	98	52.308	ENSDARG00000075417	zgc:175107	90	53.333
ENSDARG00000098324	si:cabz01054394.6	98	43.454	ENSDARG00000089598	si:cabz01054396.2	92	43.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098324	si:cabz01054394.6	88	47.436	ENSCSEG00000019047	-	88	47.436	Cynoglossus_semilaevis
ENSDARG00000098324	si:cabz01054394.6	96	48.077	ENSFHEG00000008029	-	78	44.030	Fundulus_heteroclitus
ENSDARG00000098324	si:cabz01054394.6	92	45.455	ENSFHEG00000021295	-	92	50.407	Fundulus_heteroclitus
ENSDARG00000098324	si:cabz01054394.6	94	48.000	ENSGAFG00000008274	-	96	43.911	Gambusia_affinis
ENSDARG00000098324	si:cabz01054394.6	99	50.446	ENSGAFG00000011884	-	75	44.954	Gambusia_affinis
ENSDARG00000098324	si:cabz01054394.6	90	42.995	ENSHCOG00000015000	-	82	46.903	Hippocampus_comes
ENSDARG00000098324	si:cabz01054394.6	98	39.051	ENSMMOG00000016958	-	89	40.656	Mola_mola
ENSDARG00000098324	si:cabz01054394.6	97	39.048	ENSPFOG00000024305	-	66	40.000	Poecilia_formosa
ENSDARG00000098324	si:cabz01054394.6	93	49.315	ENSPLAG00000004735	-	87	44.013	Poecilia_latipinna
ENSDARG00000098324	si:cabz01054394.6	89	44.886	ENSPMEG00000018676	-	91	44.886	Poecilia_mexicana
ENSDARG00000098324	si:cabz01054394.6	96	46.414	ENSPREG00000011741	-	94	45.038	Poecilia_reticulata
ENSDARG00000098324	si:cabz01054394.6	91	43.929	ENSPREG00000003894	-	94	46.429	Poecilia_reticulata
ENSDARG00000098324	si:cabz01054394.6	97	45.299	ENSPREG00000014028	-	91	45.299	Poecilia_reticulata
ENSDARG00000098324	si:cabz01054394.6	97	46.269	ENSPREG00000005144	-	98	43.463	Poecilia_reticulata
ENSDARG00000098324	si:cabz01054394.6	84	44.030	ENSPNYG00000005296	-	92	41.060	Pundamilia_nyererei
ENSDARG00000098324	si:cabz01054394.6	84	39.474	ENSSPAG00000004352	-	83	39.474	Stegastes_partitus
ENSDARG00000098324	si:cabz01054394.6	97	47.253	ENSXCOG00000019484	-	89	41.980	Xiphophorus_couchianus
ENSDARG00000098324	si:cabz01054394.6	97	43.678	ENSXCOG00000010567	-	90	42.509	Xiphophorus_couchianus
ENSDARG00000098324	si:cabz01054394.6	99	47.345	ENSXMAG00000023587	-	88	47.345	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function