EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098367 (Gene tree)
Gene ID: 393963
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 15667 bases
Position: chr17:10074360-10090026
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131757	SRP54	PF00448.22	1.9e-77	1	1
ENSDARP00000139136	SRP54	PF00448.22	1.9e-77	1	1
ENSDARP00000131757	SRP54_N	PF02881.19	6.6e-20	1	1
ENSDARP00000139136	SRP54_N	PF02881.19	6.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169892	-	1543	-	ENSDARP00000131757	504 (aa)	-	Q7ZVN5
ENSDART00000166649	-	2315	-	ENSDARP00000139136	504 (aa)	-	Q7ZVN5
ENSDART00000172697	-	767	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000098367's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098367's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098367	srp54	100	96.032	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSDARG00000098367	srp54	100	98.413	ENSAPOG00000011314	srp54	100	98.413	Acanthochromis_polyacanthus
ENSDARG00000098367	srp54	100	96.032	ENSAMEG00000015544	SRP54	100	96.032	Ailuropoda_melanoleuca
ENSDARG00000098367	srp54	89	96.659	ENSACIG00000022831	srp54	97	96.659	Amphilophus_citrinellus
ENSDARG00000098367	srp54	100	98.413	ENSAOCG00000019401	srp54	100	98.413	Amphiprion_ocellaris
ENSDARG00000098367	srp54	100	98.413	ENSAPEG00000001977	srp54	100	98.413	Amphiprion_percula
ENSDARG00000098367	srp54	100	98.413	ENSATEG00000013877	srp54	100	98.413	Anabas_testudineus
ENSDARG00000098367	srp54	94	95.359	ENSAPLG00000010125	SRP54	95	95.359	Anas_platyrhynchos
ENSDARG00000098367	srp54	100	95.437	ENSACAG00000002103	-	100	95.437	Anolis_carolinensis
ENSDARG00000098367	srp54	86	92.627	ENSACAG00000010631	-	100	92.627	Anolis_carolinensis
ENSDARG00000098367	srp54	65	80.060	ENSACAG00000001124	-	100	80.060	Anolis_carolinensis
ENSDARG00000098367	srp54	100	96.032	ENSANAG00000022133	SRP54	100	96.032	Aotus_nancymaae
ENSDARG00000098367	srp54	100	98.214	ENSACLG00000015866	srp54	100	98.214	Astatotilapia_calliptera
ENSDARG00000098367	srp54	100	98.810	ENSAMXG00000032669	SRP54	100	98.810	Astyanax_mexicanus
ENSDARG00000098367	srp54	100	96.032	ENSBTAG00000019085	SRP54	100	96.032	Bos_taurus
ENSDARG00000098367	srp54	98	73.092	WBGene00009012	F21D5.7	100	73.092	Caenorhabditis_elegans
ENSDARG00000098367	srp54	100	96.032	ENSCJAG00000006581	SRP54	100	96.032	Callithrix_jacchus
ENSDARG00000098367	srp54	100	96.032	ENSCAFG00000013331	SRP54	100	96.032	Canis_familiaris
ENSDARG00000098367	srp54	100	96.032	ENSCAFG00020023427	SRP54	100	96.032	Canis_lupus_dingo
ENSDARG00000098367	srp54	100	96.032	ENSCHIG00000026345	SRP54	100	96.032	Capra_hircus
ENSDARG00000098367	srp54	100	95.833	ENSTSYG00000002680	-	100	95.833	Carlito_syrichta
ENSDARG00000098367	srp54	94	84.421	ENSTSYG00000035333	-	93	84.421	Carlito_syrichta
ENSDARG00000098367	srp54	94	62.449	ENSCAPG00000008780	SRP54	100	62.449	Cavia_aperea
ENSDARG00000098367	srp54	100	95.635	ENSCPOG00000003691	SRP54	100	95.635	Cavia_porcellus
ENSDARG00000098367	srp54	90	95.714	ENSCCAG00000024179	SRP54	100	95.943	Cebus_capucinus
ENSDARG00000098367	srp54	100	96.032	ENSCATG00000034083	SRP54	100	96.032	Cercocebus_atys
ENSDARG00000098367	srp54	100	96.032	ENSCLAG00000015076	SRP54	100	96.032	Chinchilla_lanigera
ENSDARG00000098367	srp54	100	96.032	ENSCSAG00000015575	SRP54	100	96.032	Chlorocebus_sabaeus
ENSDARG00000098367	srp54	95	84.615	ENSCHOG00000008986	SRP54	100	84.615	Choloepus_hoffmanni
ENSDARG00000098367	srp54	100	96.032	ENSCPBG00000026195	SRP54	100	96.032	Chrysemys_picta_bellii
ENSDARG00000098367	srp54	100	82.341	ENSCING00000007380	-	100	82.341	Ciona_intestinalis
ENSDARG00000098367	srp54	100	96.032	ENSCANG00000028532	SRP54	100	96.032	Colobus_angolensis_palliatus
ENSDARG00000098367	srp54	100	96.032	ENSCGRG00001009525	-	100	96.032	Cricetulus_griseus_chok1gshd
ENSDARG00000098367	srp54	76	96.623	ENSCGRG00000009453	-	89	96.623	Cricetulus_griseus_crigri
ENSDARG00000098367	srp54	100	97.619	ENSCSEG00000012392	srp54	100	97.619	Cynoglossus_semilaevis
ENSDARG00000098367	srp54	100	98.413	ENSCVAG00000010395	srp54	100	98.413	Cyprinodon_variegatus
ENSDARG00000098367	srp54	100	96.032	ENSDNOG00000032525	SRP54	100	96.032	Dasypus_novemcinctus
ENSDARG00000098367	srp54	89	80.752	ENSDORG00000005159	-	98	80.752	Dipodomys_ordii
ENSDARG00000098367	srp54	96	79.381	FBgn0010747	Srp54k	98	78.916	Drosophila_melanogaster
ENSDARG00000098367	srp54	100	94.841	ENSETEG00000016307	-	100	94.841	Echinops_telfairi
ENSDARG00000098367	srp54	83	56.459	ENSETEG00000012102	-	99	56.459	Echinops_telfairi
ENSDARG00000098367	srp54	100	88.095	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSDARG00000098367	srp54	100	96.032	ENSEASG00005002057	SRP54	100	96.032	Equus_asinus_asinus
ENSDARG00000098367	srp54	99	95.783	ENSECAG00000018042	SRP54	98	95.783	Equus_caballus
ENSDARG00000098367	srp54	100	79.960	ENSEEUG00000001511	SRP54	100	79.960	Erinaceus_europaeus
ENSDARG00000098367	srp54	100	98.214	ENSELUG00000003395	srp54	100	98.214	Esox_lucius
ENSDARG00000098367	srp54	100	95.833	ENSFCAG00000032033	SRP54	100	95.833	Felis_catus
ENSDARG00000098367	srp54	100	95.635	ENSFALG00000005995	SRP54	100	95.635	Ficedula_albicollis
ENSDARG00000098367	srp54	100	96.032	ENSFDAG00000016767	SRP54	100	96.032	Fukomys_damarensis
ENSDARG00000098367	srp54	100	98.413	ENSFHEG00000004263	srp54	100	98.413	Fundulus_heteroclitus
ENSDARG00000098367	srp54	95	93.096	ENSGMOG00000011391	srp54	100	93.096	Gadus_morhua
ENSDARG00000098367	srp54	100	95.635	ENSGALG00000023135	SRP54	100	95.635	Gallus_gallus
ENSDARG00000098367	srp54	100	98.611	ENSGAFG00000011586	srp54	100	98.611	Gambusia_affinis
ENSDARG00000098367	srp54	100	98.413	ENSGACG00000004181	srp54	100	98.413	Gasterosteus_aculeatus
ENSDARG00000098367	srp54	100	96.032	ENSGAGG00000014766	SRP54	100	96.032	Gopherus_agassizii
ENSDARG00000098367	srp54	100	96.032	ENSGGOG00000002926	SRP54	100	96.032	Gorilla_gorilla
ENSDARG00000098367	srp54	100	98.214	ENSHBUG00000005678	srp54	100	98.214	Haplochromis_burtoni
ENSDARG00000098367	srp54	100	96.032	ENSHGLG00000002850	SRP54	100	96.032	Heterocephalus_glaber_female
ENSDARG00000098367	srp54	100	96.032	ENSHGLG00100005263	SRP54	100	96.032	Heterocephalus_glaber_male
ENSDARG00000098367	srp54	100	66.931	ENSHGLG00100007281	-	100	66.931	Heterocephalus_glaber_male
ENSDARG00000098367	srp54	100	96.627	ENSHCOG00000021127	srp54	100	96.627	Hippocampus_comes
ENSDARG00000098367	srp54	100	98.810	ENSIPUG00000001420	srp54	100	98.810	Ictalurus_punctatus
ENSDARG00000098367	srp54	100	96.032	ENSSTOG00000016023	SRP54	100	96.032	Ictidomys_tridecemlineatus
ENSDARG00000098367	srp54	100	91.270	ENSJJAG00000013417	-	100	91.270	Jaculus_jaculus
ENSDARG00000098367	srp54	87	74.545	ENSJJAG00000016404	-	100	74.545	Jaculus_jaculus
ENSDARG00000098367	srp54	100	98.016	ENSKMAG00000007707	srp54	100	98.016	Kryptolebias_marmoratus
ENSDARG00000098367	srp54	100	98.413	ENSLBEG00000021122	srp54	100	98.413	Labrus_bergylta
ENSDARG00000098367	srp54	100	98.413	ENSLBEG00000018690	srp54	100	98.413	Labrus_bergylta
ENSDARG00000098367	srp54	100	96.429	ENSLACG00000017890	SRP54	100	96.429	Latimeria_chalumnae
ENSDARG00000098367	srp54	100	98.214	ENSLOCG00000009440	srp54	100	98.214	Lepisosteus_oculatus
ENSDARG00000098367	srp54	100	96.032	ENSLAFG00000012007	SRP54	100	96.032	Loxodonta_africana
ENSDARG00000098367	srp54	100	96.032	ENSMFAG00000044371	SRP54	100	96.032	Macaca_fascicularis
ENSDARG00000098367	srp54	100	96.032	ENSMMUG00000015073	FAM177A1	100	96.032	Macaca_mulatta
ENSDARG00000098367	srp54	100	96.032	ENSMNEG00000006947	SRP54	100	96.032	Macaca_nemestrina
ENSDARG00000098367	srp54	100	96.032	ENSMLEG00000042251	SRP54	100	96.032	Mandrillus_leucophaeus
ENSDARG00000098367	srp54	100	98.214	ENSMAMG00000004803	srp54	100	98.214	Mastacembelus_armatus
ENSDARG00000098367	srp54	100	98.214	ENSMZEG00005027528	srp54	100	98.214	Maylandia_zebra
ENSDARG00000098367	srp54	100	91.304	ENSMGAG00000012481	SRP54	100	91.304	Meleagris_gallopavo
ENSDARG00000098367	srp54	100	96.230	ENSMAUG00000014447	-	100	96.230	Mesocricetus_auratus
ENSDARG00000098367	srp54	100	96.032	ENSMICG00000010270	SRP54	100	96.032	Microcebus_murinus
ENSDARG00000098367	srp54	87	96.136	ENSMOCG00000000948	-	100	96.136	Microtus_ochrogaster
ENSDARG00000098367	srp54	90	95.815	ENSMMOG00000020303	srp54	99	95.815	Mola_mola
ENSDARG00000098367	srp54	100	96.032	ENSMODG00000012925	-	100	96.032	Monodelphis_domestica
ENSDARG00000098367	srp54	100	96.032	ENSMODG00000023150	-	100	96.032	Monodelphis_domestica
ENSDARG00000098367	srp54	89	96.652	ENSMALG00000009163	srp54	99	96.652	Monopterus_albus
ENSDARG00000098367	srp54	100	96.230	MGP_CAROLIEiJ_G0017754	-	100	96.230	Mus_caroli
ENSDARG00000098367	srp54	100	96.230	ENSMUSG00000112449	Srp54b	100	96.230	Mus_musculus
ENSDARG00000098367	srp54	100	95.437	ENSMUSG00000079108	Srp54c	100	95.437	Mus_musculus
ENSDARG00000098367	srp54	100	96.230	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSDARG00000098367	srp54	100	96.230	MGP_PahariEiJ_G0029510	-	100	96.230	Mus_pahari
ENSDARG00000098367	srp54	100	96.032	ENSMPUG00000016302	SRP54	100	96.032	Mustela_putorius_furo
ENSDARG00000098367	srp54	100	95.437	ENSMLUG00000008958	SRP54	100	95.437	Myotis_lucifugus
ENSDARG00000098367	srp54	100	86.706	ENSNGAG00000019806	-	100	86.706	Nannospalax_galili
ENSDARG00000098367	srp54	87	98.182	ENSNBRG00000006000	srp54	100	98.182	Neolamprologus_brichardi
ENSDARG00000098367	srp54	100	96.032	ENSNLEG00000003496	SRP54	100	96.032	Nomascus_leucogenys
ENSDARG00000098367	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSDARG00000098367	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSDARG00000098367	srp54	100	96.032	ENSODEG00000004865	SRP54	100	96.032	Octodon_degus
ENSDARG00000098367	srp54	100	98.214	ENSONIG00000011768	srp54	100	98.214	Oreochromis_niloticus
ENSDARG00000098367	srp54	100	96.032	ENSOANG00000014051	SRP54	100	96.032	Ornithorhynchus_anatinus
ENSDARG00000098367	srp54	100	95.437	ENSOCUG00000007838	SRP54	100	95.437	Oryctolagus_cuniculus
ENSDARG00000098367	srp54	100	98.413	ENSORLG00000010027	srp54	100	98.413	Oryzias_latipes
ENSDARG00000098367	srp54	100	98.413	ENSORLG00020001878	srp54	100	98.413	Oryzias_latipes_hni
ENSDARG00000098367	srp54	100	98.413	ENSORLG00015021866	srp54	100	98.413	Oryzias_latipes_hsok
ENSDARG00000098367	srp54	100	98.214	ENSOMEG00000020952	srp54	100	98.214	Oryzias_melastigma
ENSDARG00000098367	srp54	100	96.032	ENSOGAG00000012188	SRP54	100	96.032	Otolemur_garnettii
ENSDARG00000098367	srp54	100	96.032	ENSOARG00000007160	SRP54	100	96.032	Ovis_aries
ENSDARG00000098367	srp54	100	96.032	ENSPPAG00000017434	SRP54	100	96.032	Pan_paniscus
ENSDARG00000098367	srp54	100	95.040	ENSPPRG00000014047	SRP54	100	95.040	Panthera_pardus
ENSDARG00000098367	srp54	100	95.833	ENSPTIG00000000744	SRP54	96	95.833	Panthera_tigris_altaica
ENSDARG00000098367	srp54	100	96.032	ENSPTRG00000006259	FAM177A1	100	96.032	Pan_troglodytes
ENSDARG00000098367	srp54	100	96.032	ENSPANG00000023853	SRP54	100	96.032	Papio_anubis
ENSDARG00000098367	srp54	100	98.413	ENSPKIG00000001953	srp54	100	98.413	Paramormyrops_kingsleyae
ENSDARG00000098367	srp54	100	95.833	ENSPSIG00000006476	SRP54	100	95.833	Pelodiscus_sinensis
ENSDARG00000098367	srp54	91	95.435	ENSPMGG00000004127	srp54	99	95.435	Periophthalmus_magnuspinnatus
ENSDARG00000098367	srp54	100	84.325	ENSPEMG00000019634	-	100	84.325	Peromyscus_maniculatus_bairdii
ENSDARG00000098367	srp54	100	90.079	ENSPMAG00000006078	-	100	90.079	Petromyzon_marinus
ENSDARG00000098367	srp54	100	96.032	ENSPCIG00000016175	SRP54	100	96.032	Phascolarctos_cinereus
ENSDARG00000098367	srp54	100	98.611	ENSPFOG00000008870	srp54	100	98.611	Poecilia_formosa
ENSDARG00000098367	srp54	100	98.611	ENSPLAG00000009889	srp54	100	98.611	Poecilia_latipinna
ENSDARG00000098367	srp54	100	98.611	ENSPMEG00000008601	srp54	100	98.611	Poecilia_mexicana
ENSDARG00000098367	srp54	100	98.611	ENSPREG00000004505	srp54	100	98.611	Poecilia_reticulata
ENSDARG00000098367	srp54	100	91.270	ENSPPYG00000005739	SRP54	100	91.270	Pongo_abelii
ENSDARG00000098367	srp54	100	92.262	ENSPCAG00000006268	SRP54	100	92.262	Procavia_capensis
ENSDARG00000098367	srp54	100	94.059	ENSPCOG00000022473	SRP54	100	94.059	Propithecus_coquereli
ENSDARG00000098367	srp54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSDARG00000098367	srp54	100	98.214	ENSPNYG00000009717	srp54	100	98.214	Pundamilia_nyererei
ENSDARG00000098367	srp54	100	99.008	ENSPNAG00000008544	srp54	100	99.008	Pygocentrus_nattereri
ENSDARG00000098367	srp54	100	96.032	ENSRNOG00000032776	Srp54a	100	96.032	Rattus_norvegicus
ENSDARG00000098367	srp54	100	96.032	ENSRROG00000041292	SRP54	100	96.032	Rhinopithecus_roxellana
ENSDARG00000098367	srp54	86	51.020	YPR088C	SRP54	95	46.743	Saccharomyces_cerevisiae
ENSDARG00000098367	srp54	94	95.781	ENSSBOG00000035145	SRP54	100	95.781	Saimiri_boliviensis_boliviensis
ENSDARG00000098367	srp54	68	95.627	ENSSHAG00000000671	SRP54	100	95.627	Sarcophilus_harrisii
ENSDARG00000098367	srp54	100	98.413	ENSSFOG00015013920	srp54	100	98.413	Scleropages_formosus
ENSDARG00000098367	srp54	100	92.509	ENSSMAG00000002441	srp54	100	92.509	Scophthalmus_maximus
ENSDARG00000098367	srp54	100	97.817	ENSSDUG00000018586	srp54	100	97.817	Seriola_dumerili
ENSDARG00000098367	srp54	100	98.016	ENSSLDG00000010476	srp54	100	98.016	Seriola_lalandi_dorsalis
ENSDARG00000098367	srp54	100	96.032	ENSSARG00000002744	SRP54	100	96.032	Sorex_araneus
ENSDARG00000098367	srp54	100	96.032	ENSSPUG00000013101	SRP54	100	96.032	Sphenodon_punctatus
ENSDARG00000098367	srp54	100	98.413	ENSSPAG00000002354	srp54	100	98.413	Stegastes_partitus
ENSDARG00000098367	srp54	100	96.032	ENSSSCG00000001955	SRP54	100	96.032	Sus_scrofa
ENSDARG00000098367	srp54	94	95.359	ENSTGUG00000011945	-	95	95.359	Taeniopygia_guttata
ENSDARG00000098367	srp54	100	97.817	ENSTRUG00000007057	srp54	100	97.817	Takifugu_rubripes
ENSDARG00000098367	srp54	100	97.222	ENSTNIG00000002589	srp54	100	97.222	Tetraodon_nigroviridis
ENSDARG00000098367	srp54	89	87.248	ENSTBEG00000011409	SRP54	100	87.248	Tupaia_belangeri
ENSDARG00000098367	srp54	100	86.706	ENSTTRG00000000928	SRP54	100	86.706	Tursiops_truncatus
ENSDARG00000098367	srp54	52	96.565	ENSUAMG00000012385	SRP54	100	96.565	Ursus_americanus
ENSDARG00000098367	srp54	100	96.032	ENSUMAG00000011234	SRP54	100	96.032	Ursus_maritimus
ENSDARG00000098367	srp54	94	95.570	ENSVPAG00000005668	SRP54	100	95.570	Vicugna_pacos
ENSDARG00000098367	srp54	100	96.032	ENSVVUG00000019962	SRP54	100	96.032	Vulpes_vulpes
ENSDARG00000098367	srp54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSDARG00000098367	srp54	88	98.420	ENSXCOG00000004658	srp54	96	98.420	Xiphophorus_couchianus
ENSDARG00000098367	srp54	100	98.611	ENSXMAG00000018315	srp54	100	98.611	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	-	IEA	Component
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	-	IEA	Process
GO:0008312	7S RNA binding	-	IEA	Function
GO:0030593	neutrophil chemotaxis	28972538.	IMP	Process
GO:0031017	exocrine pancreas development	28972538.	IMP	Process
GO:0048500	signal recognition particle	-	IEA	Component