EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098375 (Gene tree)
Gene ID: 327078
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 61529 bases
Position: chr14:16151368-16212896
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136059	RNA_pol_Rpb1_5	PF04998.17	1.8e-98	1	1
ENSDARP00000130633	RNA_pol_Rpb1_5	PF04998.17	1.8e-98	1	1
ENSDARP00000136059	RNA_pol_Rpb1_4	PF05000.17	9.7e-24	1	1
ENSDARP00000130633	RNA_pol_Rpb1_4	PF05000.17	9.8e-24	1	1
ENSDARP00000136059	RNA_pol_Rpb1_2	PF00623.20	7.4e-69	1	1
ENSDARP00000130633	RNA_pol_Rpb1_2	PF00623.20	7.5e-69	1	1
ENSDARP00000136059	RNA_pol_Rpb1_3	PF04983.18	3.5e-34	1	1
ENSDARP00000130633	RNA_pol_Rpb1_3	PF04983.18	3.5e-34	1	1
ENSDARP00000136059	RNA_pol_Rpb1_1	PF04997.12	1.1e-25	1	1
ENSDARP00000130633	RNA_pol_Rpb1_1	PF04997.12	1.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159352	-	5286	-	ENSDARP00000136059	1684 (aa)	-	A0A0R4IPG4
ENSDART00000160973	-	7583	XM_001922804	ENSDARP00000130633	1693 (aa)	XP_001922839	A0A0R4I9V4

Gene Model

Click here to download ENSDARG00000098375's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098375's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098375	polr1a	59	62.687	ENSDARG00000102569	polr3a	69	62.687
ENSDARG00000098375	polr1a	76	44.231	ENSDARG00000099966	polr2a	53	44.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098375	polr1a	100	67.077	ENSG00000068654	POLR1A	100	67.034	Homo_sapiens
ENSDARG00000098375	polr1a	70	73.971	ENSAPOG00000017945	polr1a	99	74.223	Acanthochromis_polyacanthus
ENSDARG00000098375	polr1a	100	66.938	ENSAMEG00000005807	POLR1A	100	70.245	Ailuropoda_melanoleuca
ENSDARG00000098375	polr1a	97	74.652	ENSACIG00000022147	polr1a	100	74.791	Amphilophus_citrinellus
ENSDARG00000098375	polr1a	100	72.355	ENSAOCG00000017336	polr1a	100	74.363	Amphiprion_ocellaris
ENSDARG00000098375	polr1a	100	72.238	ENSAPEG00000016105	polr1a	98	77.083	Amphiprion_percula
ENSDARG00000098375	polr1a	100	72.924	ENSATEG00000016773	polr1a	100	72.982	Anabas_testudineus
ENSDARG00000098375	polr1a	86	68.182	ENSAPLG00000013871	POLR1A	99	68.182	Anas_platyrhynchos
ENSDARG00000098375	polr1a	99	64.959	ENSACAG00000012141	POLR1A	99	64.918	Anolis_carolinensis
ENSDARG00000098375	polr1a	100	66.454	ENSANAG00000033927	POLR1A	100	66.570	Aotus_nancymaae
ENSDARG00000098375	polr1a	100	68.651	ENSACLG00000020541	polr1a	100	68.692	Astatotilapia_calliptera
ENSDARG00000098375	polr1a	100	66.995	ENSBTAG00000006481	POLR1A	100	67.053	Bos_taurus
ENSDARG00000098375	polr1a	98	40.000	WBGene00012999	rpoa-1	98	37.770	Caenorhabditis_elegans
ENSDARG00000098375	polr1a	100	66.647	ENSCJAG00000019547	POLR1A	100	66.879	Callithrix_jacchus
ENSDARG00000098375	polr1a	100	66.493	ENSCAFG00000007613	POLR1A	100	67.441	Canis_familiaris
ENSDARG00000098375	polr1a	100	66.529	ENSCAFG00020014752	POLR1A	100	67.284	Canis_lupus_dingo
ENSDARG00000098375	polr1a	100	67.192	ENSCHIG00000018204	POLR1A	100	67.017	Capra_hircus
ENSDARG00000098375	polr1a	100	66.279	ENSTSYG00000002761	POLR1A	100	65.533	Carlito_syrichta
ENSDARG00000098375	polr1a	97	64.149	ENSCAPG00000010132	POLR1A	100	64.402	Cavia_aperea
ENSDARG00000098375	polr1a	100	67.034	ENSCPOG00000012350	POLR1A	100	67.286	Cavia_porcellus
ENSDARG00000098375	polr1a	100	66.531	ENSCCAG00000019839	POLR1A	100	67.053	Cebus_capucinus
ENSDARG00000098375	polr1a	100	67.111	ENSCATG00000029786	POLR1A	100	66.976	Cercocebus_atys
ENSDARG00000098375	polr1a	100	66.067	ENSCLAG00000005187	POLR1A	100	66.357	Chinchilla_lanigera
ENSDARG00000098375	polr1a	100	67.053	ENSCSAG00000016251	POLR1A	100	66.976	Chlorocebus_sabaeus
ENSDARG00000098375	polr1a	99	67.446	ENSCPBG00000001115	POLR1A	99	67.700	Chrysemys_picta_bellii
ENSDARG00000098375	polr1a	99	46.678	ENSCSAVG00000007184	-	99	47.764	Ciona_savignyi
ENSDARG00000098375	polr1a	100	64.290	ENSCANG00000031785	POLR1A	100	64.157	Colobus_angolensis_palliatus
ENSDARG00000098375	polr1a	96	67.442	ENSCGRG00001006651	Polr1a	100	68.191	Cricetulus_griseus_chok1gshd
ENSDARG00000098375	polr1a	60	67.507	ENSCGRG00000010834	Polr1a	100	68.257	Cricetulus_griseus_crigri
ENSDARG00000098375	polr1a	100	69.254	ENSCSEG00000020190	polr1a	100	68.661	Cynoglossus_semilaevis
ENSDARG00000098375	polr1a	100	69.338	ENSCVAG00000020941	polr1a	100	69.575	Cyprinodon_variegatus
ENSDARG00000098375	polr1a	100	63.726	ENSDNOG00000010829	POLR1A	100	63.494	Dasypus_novemcinctus
ENSDARG00000098375	polr1a	100	65.994	ENSDORG00000008298	Polr1a	100	65.882	Dipodomys_ordii
ENSDARG00000098375	polr1a	79	44.290	FBgn0019938	RpI1	99	42.874	Drosophila_melanogaster
ENSDARG00000098375	polr1a	71	81.250	ENSETEG00000000412	-	71	81.250	Echinops_telfairi
ENSDARG00000098375	polr1a	89	47.880	ENSEBUG00000005667	-	99	48.435	Eptatretus_burgeri
ENSDARG00000098375	polr1a	100	67.226	ENSEASG00005001625	POLR1A	100	67.342	Equus_asinus_asinus
ENSDARG00000098375	polr1a	100	67.284	ENSECAG00000030510	-	100	70.600	Equus_caballus
ENSDARG00000098375	polr1a	100	67.284	ENSECAG00000010092	POLR1A	100	70.600	Equus_caballus
ENSDARG00000098375	polr1a	100	67.284	ENSECAG00000036306	-	100	70.600	Equus_caballus
ENSDARG00000098375	polr1a	84	79.400	ENSEEUG00000000676	POLR1A	84	79.400	Erinaceus_europaeus
ENSDARG00000098375	polr1a	100	76.333	ENSELUG00000012769	polr1a	99	76.098	Esox_lucius
ENSDARG00000098375	polr1a	100	66.802	ENSFCAG00000008966	POLR1A	100	67.499	Felis_catus
ENSDARG00000098375	polr1a	99	67.294	ENSFALG00000010082	POLR1A	99	67.294	Ficedula_albicollis
ENSDARG00000098375	polr1a	100	66.492	ENSFDAG00000013726	POLR1A	100	66.608	Fukomys_damarensis
ENSDARG00000098375	polr1a	100	68.042	ENSFHEG00000005996	polr1a	100	68.639	Fundulus_heteroclitus
ENSDARG00000098375	polr1a	100	64.772	ENSGMOG00000002230	polr1a	100	64.911	Gadus_morhua
ENSDARG00000098375	polr1a	90	64.028	ENSGALG00000038160	-	99	63.964	Gallus_gallus
ENSDARG00000098375	polr1a	100	70.217	ENSGAFG00000015266	polr1a	100	70.492	Gambusia_affinis
ENSDARG00000098375	polr1a	100	69.695	ENSGACG00000018791	polr1a	100	70.155	Gasterosteus_aculeatus
ENSDARG00000098375	polr1a	89	68.442	ENSGAGG00000004984	-	95	72.866	Gopherus_agassizii
ENSDARG00000098375	polr1a	100	66.628	ENSGGOG00000001788	POLR1A	100	67.092	Gorilla_gorilla
ENSDARG00000098375	polr1a	90	70.816	ENSHBUG00000020021	polr1a	97	74.167	Haplochromis_burtoni
ENSDARG00000098375	polr1a	100	66.764	ENSHGLG00000006334	POLR1A	100	66.744	Heterocephalus_glaber_female
ENSDARG00000098375	polr1a	100	66.570	ENSHGLG00100006614	POLR1A	100	66.551	Heterocephalus_glaber_male
ENSDARG00000098375	polr1a	100	69.444	ENSHCOG00000003345	polr1a	100	69.444	Hippocampus_comes
ENSDARG00000098375	polr1a	100	77.752	ENSIPUG00000013174	polr1a	100	77.752	Ictalurus_punctatus
ENSDARG00000098375	polr1a	100	65.253	ENSSTOG00000012580	POLR1A	100	65.159	Ictidomys_tridecemlineatus
ENSDARG00000098375	polr1a	99	66.706	ENSJJAG00000013113	Polr1a	99	67.172	Jaculus_jaculus
ENSDARG00000098375	polr1a	100	71.915	ENSKMAG00000007399	polr1a	100	71.857	Kryptolebias_marmoratus
ENSDARG00000098375	polr1a	95	74.735	ENSLBEG00000015401	polr1a	99	75.159	Labrus_bergylta
ENSDARG00000098375	polr1a	53	72.579	ENSLACG00000003218	polr1a	99	72.579	Latimeria_chalumnae
ENSDARG00000098375	polr1a	100	73.140	ENSLOCG00000010881	polr1a	100	72.464	Lepisosteus_oculatus
ENSDARG00000098375	polr1a	100	67.188	ENSLAFG00000014948	POLR1A	100	67.264	Loxodonta_africana
ENSDARG00000098375	polr1a	100	66.589	ENSMFAG00000046097	POLR1A	100	66.918	Macaca_fascicularis
ENSDARG00000098375	polr1a	100	66.531	ENSMMUG00000015815	POLR1A	100	66.860	Macaca_mulatta
ENSDARG00000098375	polr1a	100	66.589	ENSMNEG00000043313	POLR1A	100	66.918	Macaca_nemestrina
ENSDARG00000098375	polr1a	100	66.879	ENSMLEG00000042428	POLR1A	100	66.744	Mandrillus_leucophaeus
ENSDARG00000098375	polr1a	100	71.311	ENSMAMG00000016565	polr1a	100	72.199	Mastacembelus_armatus
ENSDARG00000098375	polr1a	100	72.567	ENSMZEG00005004915	polr1a	100	72.743	Maylandia_zebra
ENSDARG00000098375	polr1a	99	63.836	ENSMGAG00000013111	POLR1A	99	63.910	Meleagris_gallopavo
ENSDARG00000098375	polr1a	91	66.751	ENSMAUG00000008497	Polr1a	100	66.646	Mesocricetus_auratus
ENSDARG00000098375	polr1a	100	67.071	ENSMICG00000000757	POLR1A	100	67.572	Microcebus_murinus
ENSDARG00000098375	polr1a	100	66.802	ENSMOCG00000000122	Polr1a	100	66.513	Microtus_ochrogaster
ENSDARG00000098375	polr1a	100	70.699	ENSMMOG00000010216	polr1a	100	70.858	Mola_mola
ENSDARG00000098375	polr1a	100	63.772	ENSMODG00000009335	POLR1A	100	63.809	Monodelphis_domestica
ENSDARG00000098375	polr1a	100	72.371	ENSMALG00000013363	polr1a	100	72.780	Monopterus_albus
ENSDARG00000098375	polr1a	100	66.028	MGP_CAROLIEiJ_G0028494	Polr1a	100	66.202	Mus_caroli
ENSDARG00000098375	polr1a	100	66.318	ENSMUSG00000049553	Polr1a	100	66.609	Mus_musculus
ENSDARG00000098375	polr1a	100	66.202	MGP_PahariEiJ_G0022230	Polr1a	100	65.993	Mus_pahari
ENSDARG00000098375	polr1a	100	65.279	MGP_SPRETEiJ_G0029499	Polr1a	100	64.347	Mus_spretus
ENSDARG00000098375	polr1a	100	66.299	ENSMPUG00000009135	POLR1A	100	67.150	Mustela_putorius_furo
ENSDARG00000098375	polr1a	100	67.376	ENSMLUG00000015723	POLR1A	100	67.376	Myotis_lucifugus
ENSDARG00000098375	polr1a	99	66.802	ENSNGAG00000017907	Polr1a	99	66.997	Nannospalax_galili
ENSDARG00000098375	polr1a	100	72.626	ENSNBRG00000000519	polr1a	100	72.626	Neolamprologus_brichardi
ENSDARG00000098375	polr1a	100	64.764	ENSNLEG00000002264	POLR1A	100	65.170	Nomascus_leucogenys
ENSDARG00000098375	polr1a	79	87.402	ENSMEUG00000011665	-	79	87.402	Notamacropus_eugenii
ENSDARG00000098375	polr1a	99	62.279	ENSOPRG00000008269	POLR1A	99	62.448	Ochotona_princeps
ENSDARG00000098375	polr1a	100	66.376	ENSODEG00000003542	POLR1A	100	66.551	Octodon_degus
ENSDARG00000098375	polr1a	100	72.791	ENSONIG00000015895	polr1a	100	72.264	Oreochromis_niloticus
ENSDARG00000098375	polr1a	100	67.226	ENSOCUG00000010138	POLR1A	100	67.439	Oryctolagus_cuniculus
ENSDARG00000098375	polr1a	100	71.637	ENSORLG00000008753	polr1a	99	71.387	Oryzias_latipes
ENSDARG00000098375	polr1a	100	70.029	ENSORLG00020020726	polr1a	99	70.170	Oryzias_latipes_hni
ENSDARG00000098375	polr1a	100	66.765	ENSORLG00015016071	polr1a	98	76.596	Oryzias_latipes_hsok
ENSDARG00000098375	polr1a	100	66.763	ENSOGAG00000004031	POLR1A	100	66.937	Otolemur_garnettii
ENSDARG00000098375	polr1a	100	67.206	ENSOARG00000020601	POLR1A	100	66.686	Ovis_aries
ENSDARG00000098375	polr1a	100	66.396	ENSPPAG00000042450	POLR1A	100	66.860	Pan_paniscus
ENSDARG00000098375	polr1a	100	67.324	ENSPPRG00000006702	POLR1A	100	67.557	Panthera_pardus
ENSDARG00000098375	polr1a	100	66.859	ENSPTIG00000018783	POLR1A	100	67.091	Panthera_tigris_altaica
ENSDARG00000098375	polr1a	100	66.859	ENSPTRG00000012147	POLR1A	100	67.034	Pan_troglodytes
ENSDARG00000098375	polr1a	100	66.937	ENSPANG00000025908	POLR1A	100	66.802	Papio_anubis
ENSDARG00000098375	polr1a	100	72.044	ENSPKIG00000005468	polr1a	99	73.311	Paramormyrops_kingsleyae
ENSDARG00000098375	polr1a	63	66.449	ENSPSIG00000009321	-	99	67.102	Pelodiscus_sinensis
ENSDARG00000098375	polr1a	55	74.436	ENSPMGG00000009718	polr1a	95	74.436	Periophthalmus_magnuspinnatus
ENSDARG00000098375	polr1a	100	66.705	ENSPEMG00000022224	Polr1a	100	66.783	Peromyscus_maniculatus_bairdii
ENSDARG00000098375	polr1a	95	65.692	ENSPCIG00000004222	POLR1A	99	66.239	Phascolarctos_cinereus
ENSDARG00000098375	polr1a	100	71.454	ENSPFOG00000005025	polr1a	100	71.904	Poecilia_formosa
ENSDARG00000098375	polr1a	100	71.663	ENSPLAG00000021389	polr1a	100	72.014	Poecilia_latipinna
ENSDARG00000098375	polr1a	100	69.560	ENSPMEG00000006463	polr1a	100	70.457	Poecilia_mexicana
ENSDARG00000098375	polr1a	100	71.295	ENSPREG00000002389	polr1a	100	71.820	Poecilia_reticulata
ENSDARG00000098375	polr1a	100	65.992	ENSPPYG00000012217	POLR1A	100	66.744	Pongo_abelii
ENSDARG00000098375	polr1a	91	64.907	ENSPCAG00000011582	POLR1A	91	64.907	Procavia_capensis
ENSDARG00000098375	polr1a	100	67.787	ENSPCOG00000026987	POLR1A	100	67.961	Propithecus_coquereli
ENSDARG00000098375	polr1a	95	66.593	ENSPVAG00000012674	POLR1A	95	66.986	Pteropus_vampyrus
ENSDARG00000098375	polr1a	100	72.567	ENSPNYG00000000026	polr1a	100	72.685	Pundamilia_nyererei
ENSDARG00000098375	polr1a	100	76.937	ENSPNAG00000019223	polr1a	100	77.066	Pygocentrus_nattereri
ENSDARG00000098375	polr1a	100	66.859	ENSRNOG00000009545	Polr1a	100	67.188	Rattus_norvegicus
ENSDARG00000098375	polr1a	100	66.415	ENSRBIG00000028335	POLR1A	100	66.860	Rhinopithecus_bieti
ENSDARG00000098375	polr1a	100	66.357	ENSRROG00000031473	POLR1A	100	66.802	Rhinopithecus_roxellana
ENSDARG00000098375	polr1a	99	37.161	YOR341W	RPA190	99	37.217	Saccharomyces_cerevisiae
ENSDARG00000098375	polr1a	100	66.415	ENSSBOG00000030262	POLR1A	100	66.647	Saimiri_boliviensis_boliviensis
ENSDARG00000098375	polr1a	100	61.073	ENSSHAG00000014739	POLR1A	100	61.543	Sarcophilus_harrisii
ENSDARG00000098375	polr1a	100	71.829	ENSSFOG00015019716	polr1a	100	71.890	Scleropages_formosus
ENSDARG00000098375	polr1a	100	72.030	ENSSMAG00000014342	polr1a	100	71.796	Scophthalmus_maximus
ENSDARG00000098375	polr1a	100	72.552	ENSSDUG00000014631	polr1a	100	73.423	Seriola_dumerili
ENSDARG00000098375	polr1a	100	71.521	ENSSLDG00000024095	polr1a	100	72.160	Seriola_lalandi_dorsalis
ENSDARG00000098375	polr1a	70	95.122	ENSSARG00000003136	-	70	95.122	Sorex_araneus
ENSDARG00000098375	polr1a	100	64.982	ENSSPUG00000004215	POLR1A	98	72.821	Sphenodon_punctatus
ENSDARG00000098375	polr1a	65	77.412	ENSSPAG00000016341	polr1a	94	77.412	Stegastes_partitus
ENSDARG00000098375	polr1a	84	68.366	ENSSSCG00000008226	POLR1A	99	68.277	Sus_scrofa
ENSDARG00000098375	polr1a	99	66.568	ENSTGUG00000010704	POLR1A	99	66.568	Taeniopygia_guttata
ENSDARG00000098375	polr1a	100	69.701	ENSTRUG00000002210	polr1a	99	69.484	Takifugu_rubripes
ENSDARG00000098375	polr1a	100	64.876	ENSTNIG00000010116	polr1a	100	64.760	Tetraodon_nigroviridis
ENSDARG00000098375	polr1a	73	81.416	ENSTBEG00000008646	POLR1A	74	81.416	Tupaia_belangeri
ENSDARG00000098375	polr1a	100	64.352	ENSTTRG00000008597	POLR1A	100	64.352	Tursiops_truncatus
ENSDARG00000098375	polr1a	69	68.497	ENSUAMG00000012158	-	94	68.782	Ursus_americanus
ENSDARG00000098375	polr1a	100	66.338	ENSUMAG00000006700	POLR1A	97	70.021	Ursus_maritimus
ENSDARG00000098375	polr1a	100	65.975	ENSVVUG00000001245	POLR1A	100	67.286	Vulpes_vulpes
ENSDARG00000098375	polr1a	100	64.315	ENSXETG00000001952	polr1a	100	65.229	Xenopus_tropicalis
ENSDARG00000098375	polr1a	100	71.712	ENSXMAG00000004032	polr1a	100	72.154	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0014032	neural crest cell development	25913037.	IMP	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function
GO:0048703	embryonic viscerocranium morphogenesis	25913037.	IMP	Process