EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098430 (Gene tree)
Gene ID: 565755
Gene Symbol: znf1078
Alias: zgc:173711
Full Name: zinc finger protein 1078
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7040 bases
Position: chr4:55593296-55600335
Accession: ZDB-GENE-080218-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	1	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	2	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	3	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	4	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	5	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	6	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	7	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	8	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	9	10
ENSDARP00000131494	zf-C2H2	PF00096.26	2.4e-62	10	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	1	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	2	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	3	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	4	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	5	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	6	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	7	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	8	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	9	10
ENSDARP00000139081	zf-C2H2	PF00096.26	2.4e-62	10	10
ENSDARP00000131494	zf-met	PF12874.7	9e-05	1	2
ENSDARP00000131494	zf-met	PF12874.7	9e-05	2	2
ENSDARP00000139081	zf-met	PF12874.7	9e-05	1	2
ENSDARP00000139081	zf-met	PF12874.7	9e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159365	-	1760	-	ENSDARP00000131494	362 (aa)	-	H0WF55
ENSDART00000163356	-	1089	XM_009300757	ENSDARP00000139081	362 (aa)	XP_009299032	H0WF55

Gene Model

Click here to download ENSDARG00000098430's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098430's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098430	znf1078	99	69.061	ENSDARG00000105137	zgc:173705	99	69.061
ENSDARG00000098430	znf1078	99	57.246	ENSDARG00000093994	znf1058	100	61.330
ENSDARG00000098430	znf1078	99	63.687	ENSDARG00000103721	si:dkey-122c11.7	99	65.084
ENSDARG00000098430	znf1078	100	61.905	ENSDARG00000089814	znf1042	99	61.826
ENSDARG00000098430	znf1078	99	60.894	ENSDARG00000111550	CABZ01002702.1	99	62.451
ENSDARG00000098430	znf1078	99	46.978	ENSDARG00000096856	znf1012	100	49.000
ENSDARG00000098430	znf1078	99	66.201	ENSDARG00000113808	si:dkeyp-82b4.6	96	67.039
ENSDARG00000098430	znf1078	99	52.342	ENSDARG00000110852	znf1111	100	52.342
ENSDARG00000098430	znf1078	100	63.344	ENSDARG00000105067	znf1043	100	65.018
ENSDARG00000098430	znf1078	99	70.442	ENSDARG00000115450	CABZ01012382.1	99	70.442
ENSDARG00000098430	znf1078	99	65.084	ENSDARG00000112103	si:dkey-16p19.1	99	66.201
ENSDARG00000098430	znf1078	99	56.278	ENSDARG00000076272	znf1041	99	78.723
ENSDARG00000098430	znf1078	100	63.171	ENSDARG00000100842	si:ch211-223a21.4	100	54.731
ENSDARG00000098430	znf1078	99	66.851	ENSDARG00000114437	zgc:173705	99	66.851
ENSDARG00000098430	znf1078	99	64.103	ENSDARG00000100961	zgc:174653	93	62.821
ENSDARG00000098430	znf1078	100	63.171	ENSDARG00000102673	si:dkey-26i24.1	100	56.039
ENSDARG00000098430	znf1078	99	70.166	ENSDARG00000109381	CU457778.2	99	70.166
ENSDARG00000098430	znf1078	100	68.551	ENSDARG00000098270	znf1053	100	68.551
ENSDARG00000098430	znf1078	99	55.469	ENSDARG00000098901	CABZ01002768.1	100	55.615
ENSDARG00000098430	znf1078	99	69.613	ENSDARG00000100001	znf1096	99	69.613
ENSDARG00000098430	znf1078	99	51.546	ENSDARG00000074365	zgc:171901	100	57.500
ENSDARG00000098430	znf1078	100	95.580	ENSDARG00000115655	znf1078	100	95.580
ENSDARG00000098430	znf1078	100	96.409	ENSDARG00000099736	CABZ01075078.1	100	96.409
ENSDARG00000098430	znf1078	100	69.611	ENSDARG00000103310	znf1053	100	69.611
ENSDARG00000098430	znf1078	100	64.194	ENSDARG00000105306	si:dkeyp-44b5.5	100	56.266
ENSDARG00000098430	znf1078	100	57.619	ENSDARG00000086449	znf1055	85	59.777
ENSDARG00000098430	znf1078	100	94.475	ENSDARG00000101327	znf1076	100	94.475
ENSDARG00000098430	znf1078	100	65.724	ENSDARG00000088000	znf1057	100	65.724
ENSDARG00000098430	znf1078	99	65.181	ENSDARG00000114793	CU182823.4	98	66.017
ENSDARG00000098430	znf1078	100	62.259	ENSDARG00000110658	zgc:174696	100	66.116
ENSDARG00000098430	znf1078	99	46.429	ENSDARG00000089598	si:cabz01054396.2	100	52.174
ENSDARG00000098430	znf1078	99	52.212	ENSDARG00000114396	znf1017	100	45.355
ENSDARG00000098430	znf1078	100	64.194	ENSDARG00000103636	zgc:173702	100	56.010
ENSDARG00000098430	znf1078	100	95.580	ENSDARG00000114947	BX465848.1	100	95.580
ENSDARG00000098430	znf1078	92	59.722	ENSDARG00000116177	znf1127	92	58.889
ENSDARG00000098430	znf1078	99	59.050	ENSDARG00000098536	si:dkey-25i10.1	100	59.050
ENSDARG00000098430	znf1078	99	46.497	ENSDARG00000075417	zgc:175107	98	46.497
ENSDARG00000098430	znf1078	99	55.156	ENSDARG00000098071	znf1049	99	61.151
ENSDARG00000098430	znf1078	100	64.194	ENSDARG00000090160	zgc:173709	100	56.010
ENSDARG00000098430	znf1078	92	63.174	ENSDARG00000103495	zgc:173714	99	63.174
ENSDARG00000098430	znf1078	99	45.822	ENSDARG00000086223	si:ch73-144d13.4	100	45.822
ENSDARG00000098430	znf1078	92	93.976	ENSDARG00000095605	CR846087.3	100	93.976
ENSDARG00000098430	znf1078	100	62.143	ENSDARG00000098986	znf1040	100	58.095
ENSDARG00000098430	znf1078	78	69.231	ENSDARG00000112606	BX248128.2	100	69.231
ENSDARG00000098430	znf1078	99	51.247	ENSDARG00000092507	znf1013	98	51.247
ENSDARG00000098430	znf1078	99	56.667	ENSDARG00000111465	znf1104	97	55.224
ENSDARG00000098430	znf1078	99	50.139	ENSDARG00000098991	znf1095	98	51.253
ENSDARG00000098430	znf1078	99	47.802	ENSDARG00000102800	CABZ01081752.2	93	48.077
ENSDARG00000098430	znf1078	100	62.381	ENSDARG00000092938	znf1047	85	59.777
ENSDARG00000098430	znf1078	99	48.626	ENSDARG00000103244	CABZ01081752.3	93	48.626
ENSDARG00000098430	znf1078	99	62.983	ENSDARG00000098087	si:dkey-30f3.2	99	64.917
ENSDARG00000098430	znf1078	100	70.604	ENSDARG00000116216	znf1046	95	70.604
ENSDARG00000098430	znf1078	99	70.166	ENSDARG00000112725	si:dkey-22h13.2	99	70.166
ENSDARG00000098430	znf1078	100	62.381	ENSDARG00000091994	znf1048	85	60.056
ENSDARG00000098430	znf1078	100	63.939	ENSDARG00000094558	si:dkeyp-53e4.1	100	55.243
ENSDARG00000098430	znf1078	99	50.000	ENSDARG00000087168	si:ch211-162i8.4	99	50.000
ENSDARG00000098430	znf1078	99	66.387	ENSDARG00000102561	AL645691.1	97	67.227
ENSDARG00000098430	znf1078	100	63.939	ENSDARG00000096041	si:ch211-162i8.2	100	55.243
ENSDARG00000098430	znf1078	99	64.365	ENSDARG00000102791	zgc:174704	99	66.022
ENSDARG00000098430	znf1078	100	55.476	ENSDARG00000104074	znf1052	100	60.476
ENSDARG00000098430	znf1078	100	64.286	ENSDARG00000104407	BX649453.1	100	60.071
ENSDARG00000098430	znf1078	99	60.192	ENSDARG00000101137	znf999	100	76.190
ENSDARG00000098430	znf1078	99	55.251	ENSDARG00000091477	znf1066	100	61.871
ENSDARG00000098430	znf1078	99	52.020	ENSDARG00000102027	si:dkey-172k15.11	96	52.020
ENSDARG00000098430	znf1078	99	48.905	ENSDARG00000089715	si:cabz01054394.7	99	48.905
ENSDARG00000098430	znf1078	99	59.644	ENSDARG00000100509	si:dkey-82i20.2	100	59.644
ENSDARG00000098430	znf1078	100	62.619	ENSDARG00000102600	CABZ01003344.1	85	60.335
ENSDARG00000098430	znf1078	100	57.143	ENSDARG00000096210	znf1050	100	61.667
ENSDARG00000098430	znf1078	100	64.706	ENSDARG00000110229	zgc:173702	100	56.010
ENSDARG00000098430	znf1078	100	96.133	ENSDARG00000098196	znf1077	100	96.133
ENSDARG00000098430	znf1078	99	46.774	ENSDARG00000074298	znf1015	100	50.588
ENSDARG00000098430	znf1078	86	59.936	ENSDARG00000100653	si:dkeyp-82b4.6	99	61.218
ENSDARG00000098430	znf1078	99	56.471	ENSDARG00000113626	znf976	95	56.471
ENSDARG00000098430	znf1078	99	52.821	ENSDARG00000097812	si:ch73-144d13.5	99	52.821
ENSDARG00000098430	znf1078	99	44.784	ENSDARG00000090942	CABZ01054394.1	98	46.301
ENSDARG00000098430	znf1078	100	64.706	ENSDARG00000103471	si:dkey-199m13.4	100	56.010
ENSDARG00000098430	znf1078	99	66.572	ENSDARG00000102008	si:dkey-72l17.6	99	67.705
ENSDARG00000098430	znf1078	92	50.256	ENSDARG00000116920	BX465848.2	91	52.571
ENSDARG00000098430	znf1078	99	69.890	ENSDARG00000096189	si:dkey-54j5.2	99	69.890

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098430	znf1078	99	45.128	ENSORLG00000012434	znf1064	76	35.455	Oryzias_latipes
ENSDARG00000098430	znf1078	77	44.144	ENSORLG00015010409	-	64	52.000	Oryzias_latipes_hsok
ENSDARG00000098430	znf1078	70	57.377	ENSTRUG00000022969	-	67	57.377	Takifugu_rubripes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function