EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098433 (Gene tree)
Gene ID: 393107
Gene Symbol: utp6
Alias: zgc:55648
Full Name: UTP6%2C small subunit (SSU) processome component%2C homolog (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7317 bases
Position: chr6:18524444-18531760
Accession: ZDB-GENE-040426-769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134361	U3_assoc_6	PF08640.11	5.4e-24	1	1
ENSDARP00000134857	U3_assoc_6	PF08640.11	7.3e-23	1	1
ENSDARP00000141893	U3_assoc_6	PF08640.11	3.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000160693	-	732	-	ENSDARP00000141893	226 (aa)	-	A0A0R4IXD3
ENSDART00000162148	-	433	-	-	- (aa)	-	-
ENSDART00000167167	-	622	-	ENSDARP00000134361	181 (aa)	-	A0A0R4IKF5
ENSDART00000163306	-	782	-	-	- (aa)	-	-
ENSDART00000169780	-	2014	-	ENSDARP00000134857	594 (aa)	-	A0A0R4IGM5

Gene Model

Click here to download ENSDARG00000098433's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098433's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098433	utp6	100	63.536	ENSG00000108651	UTP6	100	53.099	Homo_sapiens
ENSDARG00000098433	utp6	100	79.006	ENSAPOG00000000435	utp6	100	72.101	Acanthochromis_polyacanthus
ENSDARG00000098433	utp6	100	62.431	ENSAMEG00000005443	UTP6	99	53.099	Ailuropoda_melanoleuca
ENSDARG00000098433	utp6	100	79.006	ENSACIG00000004124	utp6	100	69.076	Amphilophus_citrinellus
ENSDARG00000098433	utp6	100	79.006	ENSAOCG00000016812	utp6	100	71.597	Amphiprion_ocellaris
ENSDARG00000098433	utp6	100	78.453	ENSAPEG00000023565	utp6	100	71.765	Amphiprion_percula
ENSDARG00000098433	utp6	100	78.453	ENSATEG00000003401	utp6	100	70.588	Anabas_testudineus
ENSDARG00000098433	utp6	96	60.694	ENSAPLG00000005821	UTP6	99	55.857	Anas_platyrhynchos
ENSDARG00000098433	utp6	100	69.061	ENSACAG00000009472	UTP6	100	59.129	Anolis_carolinensis
ENSDARG00000098433	utp6	100	63.536	ENSANAG00000034603	UTP6	100	52.764	Aotus_nancymaae
ENSDARG00000098433	utp6	100	79.006	ENSACLG00000006728	utp6	100	72.101	Astatotilapia_calliptera
ENSDARG00000098433	utp6	100	83.978	ENSAMXG00000009478	utp6	100	77.441	Astyanax_mexicanus
ENSDARG00000098433	utp6	100	59.669	ENSBTAG00000015612	UTP6	100	50.669	Bos_taurus
ENSDARG00000098433	utp6	100	59.116	ENSBTAG00000003769	-	98	49.329	Bos_taurus
ENSDARG00000098433	utp6	100	63.536	ENSCJAG00000014115	UTP6	100	53.099	Callithrix_jacchus
ENSDARG00000098433	utp6	100	62.983	ENSCAFG00000018507	UTP6	100	53.177	Canis_familiaris
ENSDARG00000098433	utp6	100	62.983	ENSCAFG00020014678	UTP6	100	53.177	Canis_lupus_dingo
ENSDARG00000098433	utp6	100	60.221	ENSCHIG00000017954	-	100	50.502	Capra_hircus
ENSDARG00000098433	utp6	100	60.221	ENSCHIG00000009726	-	100	50.502	Capra_hircus
ENSDARG00000098433	utp6	100	60.773	ENSTSYG00000002202	UTP6	99	48.993	Carlito_syrichta
ENSDARG00000098433	utp6	84	61.842	ENSCAPG00000017595	UTP6	97	46.355	Cavia_aperea
ENSDARG00000098433	utp6	100	63.536	ENSCPOG00000014294	UTP6	100	53.188	Cavia_porcellus
ENSDARG00000098433	utp6	100	57.459	ENSCCAG00000033318	-	100	48.911	Cebus_capucinus
ENSDARG00000098433	utp6	100	63.536	ENSCATG00000034868	UTP6	100	52.341	Cercocebus_atys
ENSDARG00000098433	utp6	100	63.536	ENSCLAG00000007274	UTP6	99	53.691	Chinchilla_lanigera
ENSDARG00000098433	utp6	100	63.536	ENSCSAG00000006595	UTP6	100	52.174	Chlorocebus_sabaeus
ENSDARG00000098433	utp6	100	55.249	ENSCHOG00000010940	-	73	43.478	Choloepus_hoffmanni
ENSDARG00000098433	utp6	100	69.061	ENSCPBG00000004652	UTP6	100	59.129	Chrysemys_picta_bellii
ENSDARG00000098433	utp6	100	45.856	ENSCING00000022947	-	99	30.706	Ciona_intestinalis
ENSDARG00000098433	utp6	100	43.646	ENSCSAVG00000011416	-	99	34.969	Ciona_savignyi
ENSDARG00000098433	utp6	99	39.744	ENSCANG00000031141	UTP6	89	38.857	Colobus_angolensis_palliatus
ENSDARG00000098433	utp6	100	64.641	ENSCGRG00001000046	Utp6	100	54.090	Cricetulus_griseus_chok1gshd
ENSDARG00000098433	utp6	95	53.169	ENSCGRG00000011543	Utp6	100	53.169	Cricetulus_griseus_crigri
ENSDARG00000098433	utp6	100	74.586	ENSCSEG00000013422	utp6	100	77.049	Cynoglossus_semilaevis
ENSDARG00000098433	utp6	100	78.453	ENSCVAG00000020322	utp6	100	69.244	Cyprinodon_variegatus
ENSDARG00000098433	utp6	100	64.088	ENSDNOG00000037018	UTP6	100	53.846	Dasypus_novemcinctus
ENSDARG00000098433	utp6	100	66.298	ENSDORG00000003843	Utp6	99	54.596	Dipodomys_ordii
ENSDARG00000098433	utp6	77	55.000	ENSEBUG00000000334	-	96	55.000	Eptatretus_burgeri
ENSDARG00000098433	utp6	100	63.536	ENSEASG00005010870	UTP6	100	53.512	Equus_asinus_asinus
ENSDARG00000098433	utp6	100	63.536	ENSECAG00000022217	UTP6	100	53.344	Equus_caballus
ENSDARG00000098433	utp6	100	75.691	ENSELUG00000006618	utp6	100	71.212	Esox_lucius
ENSDARG00000098433	utp6	100	59.116	ENSFCAG00000015795	UTP6	100	50.744	Felis_catus
ENSDARG00000098433	utp6	100	68.508	ENSFALG00000002282	UTP6	100	56.951	Ficedula_albicollis
ENSDARG00000098433	utp6	100	64.641	ENSFDAG00000019506	UTP6	100	53.859	Fukomys_damarensis
ENSDARG00000098433	utp6	100	75.691	ENSFHEG00000010373	utp6	100	68.235	Fundulus_heteroclitus
ENSDARG00000098433	utp6	100	72.376	ENSGMOG00000011958	utp6	100	65.882	Gadus_morhua
ENSDARG00000098433	utp6	100	70.166	ENSGALG00000003260	UTP6	100	57.621	Gallus_gallus
ENSDARG00000098433	utp6	100	79.006	ENSGAFG00000008505	utp6	100	69.916	Gambusia_affinis
ENSDARG00000098433	utp6	100	79.558	ENSGACG00000019424	utp6	100	69.412	Gasterosteus_aculeatus
ENSDARG00000098433	utp6	100	68.508	ENSGAGG00000004820	UTP6	100	58.124	Gopherus_agassizii
ENSDARG00000098433	utp6	99	54.749	ENSGGOG00000026003	-	100	44.202	Gorilla_gorilla
ENSDARG00000098433	utp6	100	64.088	ENSGGOG00000013569	UTP6	100	53.266	Gorilla_gorilla
ENSDARG00000098433	utp6	100	79.006	ENSHBUG00000018668	utp6	100	72.101	Haplochromis_burtoni
ENSDARG00000098433	utp6	100	64.641	ENSHGLG00000010332	UTP6	100	53.691	Heterocephalus_glaber_female
ENSDARG00000098433	utp6	98	58.989	ENSHGLG00000008642	-	99	50.253	Heterocephalus_glaber_female
ENSDARG00000098433	utp6	100	57.459	ENSHGLG00100014271	-	100	51.510	Heterocephalus_glaber_male
ENSDARG00000098433	utp6	98	59.551	ENSHGLG00100006047	-	99	51.937	Heterocephalus_glaber_male
ENSDARG00000098433	utp6	100	76.243	ENSHCOG00000017277	utp6	100	67.059	Hippocampus_comes
ENSDARG00000098433	utp6	100	86.188	ENSIPUG00000022587	Utp6	100	76.431	Ictalurus_punctatus
ENSDARG00000098433	utp6	100	65.193	ENSSTOG00000015875	UTP6	100	53.601	Ictidomys_tridecemlineatus
ENSDARG00000098433	utp6	100	77.901	ENSKMAG00000021631	utp6	100	68.908	Kryptolebias_marmoratus
ENSDARG00000098433	utp6	100	78.453	ENSLBEG00000002115	utp6	100	71.092	Labrus_bergylta
ENSDARG00000098433	utp6	100	74.033	ENSLACG00000017158	UTP6	100	60.804	Latimeria_chalumnae
ENSDARG00000098433	utp6	100	78.453	ENSLOCG00000013797	utp6	91	67.216	Lepisosteus_oculatus
ENSDARG00000098433	utp6	100	64.088	ENSLAFG00000013008	UTP6	100	53.344	Loxodonta_africana
ENSDARG00000098433	utp6	100	63.536	ENSMFAG00000038842	UTP6	100	52.341	Macaca_fascicularis
ENSDARG00000098433	utp6	99	44.751	ENSMFAG00000041904	-	97	37.564	Macaca_fascicularis
ENSDARG00000098433	utp6	100	63.536	ENSMMUG00000020403	UTP6	100	52.341	Macaca_mulatta
ENSDARG00000098433	utp6	100	63.536	ENSMNEG00000039480	UTP6	100	52.341	Macaca_nemestrina
ENSDARG00000098433	utp6	99	44.751	ENSMLEG00000039364	-	98	41.781	Mandrillus_leucophaeus
ENSDARG00000098433	utp6	100	56.906	ENSMLEG00000032174	UTP6	100	45.318	Mandrillus_leucophaeus
ENSDARG00000098433	utp6	100	76.796	ENSMAMG00000002228	utp6	99	70.420	Mastacembelus_armatus
ENSDARG00000098433	utp6	100	79.006	ENSMZEG00005023895	utp6	100	72.101	Maylandia_zebra
ENSDARG00000098433	utp6	83	68.874	ENSMGAG00000008111	UTP6	100	56.690	Meleagris_gallopavo
ENSDARG00000098433	utp6	100	64.088	ENSMAUG00000021895	Utp6	100	53.434	Mesocricetus_auratus
ENSDARG00000098433	utp6	100	64.641	ENSMICG00000002632	UTP6	100	51.839	Microcebus_murinus
ENSDARG00000098433	utp6	100	64.088	ENSMOCG00000014163	Utp6	100	52.429	Microtus_ochrogaster
ENSDARG00000098433	utp6	100	72.376	ENSMMOG00000008653	utp6	100	71.186	Mola_mola
ENSDARG00000098433	utp6	100	65.746	ENSMODG00000019206	UTP6	100	56.856	Monodelphis_domestica
ENSDARG00000098433	utp6	100	76.796	ENSMALG00000021112	utp6	100	70.924	Monopterus_albus
ENSDARG00000098433	utp6	100	64.641	MGP_CAROLIEiJ_G0016828	Utp6	100	54.104	Mus_caroli
ENSDARG00000098433	utp6	100	64.641	ENSMUSG00000035575	Utp6	100	54.104	Mus_musculus
ENSDARG00000098433	utp6	100	64.641	MGP_PahariEiJ_G0017965	Utp6	100	49.414	Mus_pahari
ENSDARG00000098433	utp6	100	64.088	MGP_SPRETEiJ_G0017672	Utp6	100	53.769	Mus_spretus
ENSDARG00000098433	utp6	100	62.431	ENSMPUG00000014581	UTP6	100	51.759	Mustela_putorius_furo
ENSDARG00000098433	utp6	100	63.536	ENSMLUG00000016422	UTP6	100	52.676	Myotis_lucifugus
ENSDARG00000098433	utp6	100	64.088	ENSNGAG00000015482	Utp6	100	53.769	Nannospalax_galili
ENSDARG00000098433	utp6	100	78.453	ENSNBRG00000019714	utp6	100	71.933	Neolamprologus_brichardi
ENSDARG00000098433	utp6	100	63.536	ENSNLEG00000011009	UTP6	100	52.094	Nomascus_leucogenys
ENSDARG00000098433	utp6	88	50.355	ENSOPRG00000008446	-	89	50.355	Ochotona_princeps
ENSDARG00000098433	utp6	100	58.011	ENSODEG00000011971	UTP6	98	57.384	Octodon_degus
ENSDARG00000098433	utp6	100	79.006	ENSONIG00000018090	utp6	100	71.597	Oreochromis_niloticus
ENSDARG00000098433	utp6	94	66.667	ENSOANG00000004279	UTP6	97	55.575	Ornithorhynchus_anatinus
ENSDARG00000098433	utp6	100	64.641	ENSOCUG00000016980	UTP6	99	51.759	Oryctolagus_cuniculus
ENSDARG00000098433	utp6	100	76.796	ENSORLG00000003546	utp6	64	68.350	Oryzias_latipes
ENSDARG00000098433	utp6	100	76.796	ENSORLG00020010377	utp6	99	68.350	Oryzias_latipes_hni
ENSDARG00000098433	utp6	100	76.796	ENSORLG00015008893	utp6	99	68.013	Oryzias_latipes_hsok
ENSDARG00000098433	utp6	100	79.558	ENSOMEG00000017487	utp6	100	69.412	Oryzias_melastigma
ENSDARG00000098433	utp6	99	41.241	ENSOGAG00000004511	UTP6	100	46.286	Otolemur_garnettii
ENSDARG00000098433	utp6	100	59.669	ENSOARG00000013474	UTP6	100	50.334	Ovis_aries
ENSDARG00000098433	utp6	100	64.088	ENSPPAG00000038089	UTP6	100	53.266	Pan_paniscus
ENSDARG00000098433	utp6	99	56.983	ENSPPAG00000016895	-	100	44.370	Pan_paniscus
ENSDARG00000098433	utp6	100	62.983	ENSPPRG00000001010	UTP6	100	53.010	Panthera_pardus
ENSDARG00000098433	utp6	100	62.983	ENSPTIG00000013913	UTP6	100	53.010	Panthera_tigris_altaica
ENSDARG00000098433	utp6	99	56.425	ENSPTRG00000044798	-	100	44.370	Pan_troglodytes
ENSDARG00000098433	utp6	100	64.088	ENSPTRG00000008977	UTP6	100	53.266	Pan_troglodytes
ENSDARG00000098433	utp6	100	63.536	ENSPANG00000023113	UTP6	100	50.664	Papio_anubis
ENSDARG00000098433	utp6	98	44.134	ENSPANG00000034274	-	98	41.581	Papio_anubis
ENSDARG00000098433	utp6	100	80.663	ENSPKIG00000004653	utp6	100	70.569	Paramormyrops_kingsleyae
ENSDARG00000098433	utp6	100	68.508	ENSPSIG00000012435	UTP6	100	58.151	Pelodiscus_sinensis
ENSDARG00000098433	utp6	100	75.691	ENSPMGG00000009548	utp6	100	68.067	Periophthalmus_magnuspinnatus
ENSDARG00000098433	utp6	100	64.641	ENSPEMG00000014081	Utp6	100	53.099	Peromyscus_maniculatus_bairdii
ENSDARG00000098433	utp6	92	45.293	ENSPMAG00000009561	utp6	99	45.293	Petromyzon_marinus
ENSDARG00000098433	utp6	100	70.166	ENSPCIG00000029968	UTP6	86	59.129	Phascolarctos_cinereus
ENSDARG00000098433	utp6	100	79.558	ENSPFOG00000013918	utp6	100	69.916	Poecilia_formosa
ENSDARG00000098433	utp6	100	78.453	ENSPLAG00000017825	utp6	100	69.580	Poecilia_latipinna
ENSDARG00000098433	utp6	100	79.558	ENSPMEG00000008133	utp6	100	70.084	Poecilia_mexicana
ENSDARG00000098433	utp6	100	76.796	ENSPREG00000013108	utp6	99	67.227	Poecilia_reticulata
ENSDARG00000098433	utp6	100	62.431	ENSPPYG00000008154	UTP6	100	50.419	Pongo_abelii
ENSDARG00000098433	utp6	100	43.094	ENSPCAG00000014878	-	54	46.801	Procavia_capensis
ENSDARG00000098433	utp6	100	66.851	ENSPCOG00000010224	UTP6	100	52.174	Propithecus_coquereli
ENSDARG00000098433	utp6	100	62.983	ENSPVAG00000015759	UTP6	100	50.000	Pteropus_vampyrus
ENSDARG00000098433	utp6	100	78.453	ENSPNYG00000002290	utp6	100	71.765	Pundamilia_nyererei
ENSDARG00000098433	utp6	100	83.978	ENSPNAG00000027370	utp6	100	74.074	Pygocentrus_nattereri
ENSDARG00000098433	utp6	100	62.983	ENSRNOG00000014209	Utp6	100	52.429	Rattus_norvegicus
ENSDARG00000098433	utp6	100	63.536	ENSRBIG00000020822	UTP6	100	51.839	Rhinopithecus_bieti
ENSDARG00000098433	utp6	100	63.536	ENSRROG00000036838	UTP6	100	51.839	Rhinopithecus_roxellana
ENSDARG00000098433	utp6	83	67.550	ENSSHAG00000018792	-	96	61.301	Sarcophilus_harrisii
ENSDARG00000098433	utp6	100	79.558	ENSSFOG00015005978	utp6	100	71.739	Scleropages_formosus
ENSDARG00000098433	utp6	100	79.558	ENSSMAG00000014772	utp6	100	70.420	Scophthalmus_maximus
ENSDARG00000098433	utp6	100	77.901	ENSSDUG00000000329	utp6	100	70.756	Seriola_dumerili
ENSDARG00000098433	utp6	100	77.901	ENSSLDG00000016724	utp6	100	70.588	Seriola_lalandi_dorsalis
ENSDARG00000098433	utp6	100	65.193	ENSSARG00000010778	UTP6	99	47.906	Sorex_araneus
ENSDARG00000098433	utp6	100	69.061	ENSSPUG00000005273	UTP6	100	58.961	Sphenodon_punctatus
ENSDARG00000098433	utp6	100	77.348	ENSSPAG00000011871	utp6	99	70.588	Stegastes_partitus
ENSDARG00000098433	utp6	100	63.536	ENSSSCG00000017745	UTP6	100	53.010	Sus_scrofa
ENSDARG00000098433	utp6	100	67.956	ENSTGUG00000004999	UTP6	100	56.449	Taeniopygia_guttata
ENSDARG00000098433	utp6	100	77.348	ENSTRUG00000012005	utp6	100	67.508	Takifugu_rubripes
ENSDARG00000098433	utp6	100	76.243	ENSTNIG00000003235	utp6	100	67.508	Tetraodon_nigroviridis
ENSDARG00000098433	utp6	100	52.486	ENSTBEG00000005388	-	64	52.486	Tupaia_belangeri
ENSDARG00000098433	utp6	100	62.431	ENSTTRG00000009911	UTP6	100	52.676	Tursiops_truncatus
ENSDARG00000098433	utp6	100	61.878	ENSUMAG00000015139	UTP6	99	52.931	Ursus_maritimus
ENSDARG00000098433	utp6	100	62.431	ENSVPAG00000005782	UTP6	100	53.177	Vicugna_pacos
ENSDARG00000098433	utp6	100	62.983	ENSVVUG00000012238	UTP6	100	53.177	Vulpes_vulpes
ENSDARG00000098433	utp6	100	49.500	ENSXETG00000020057	utp6	100	49.500	Xenopus_tropicalis
ENSDARG00000098433	utp6	100	79.006	ENSXCOG00000013626	utp6	100	77.778	Xiphophorus_couchianus
ENSDARG00000098433	utp6	100	79.558	ENSXMAG00000017414	utp6	100	70.252	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	IEA	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0030515	snoRNA binding	-	IEA	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component