EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000098661 (Gene tree)
Gene ID: 101885450
Gene Symbol: AL935300.3
Alias: -
Full Name: gastrula zinc finger protein XlCGF49.1-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4434 bases
Position: chr2:927204-931637
Accession: 101885450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	1	6
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	2	6
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	3	6
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	4	6
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	5	6
ENSDARP00000131941	zf-C2H2	PF00096.26	1.1e-30	6	6
ENSDARP00000131941	zf-met	PF12874.7	3.9e-09	1	2
ENSDARP00000131941	zf-met	PF12874.7	3.9e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165477	AL935300.3-201	872	XM_005163653	ENSDARP00000131941	234 (aa)	XP_005163710	A0A0G2KI00

Gene Model

Click here to download ENSDARG00000098661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098661's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098661	AL935300.3	84	55.405	ENSDARG00000094736	znf1157	95	60.345
ENSDARG00000098661	AL935300.3	72	55.689	ENSDARG00000088927	CR450793.1	93	55.689
ENSDARG00000098661	AL935300.3	74	51.497	ENSDARG00000071589	si:dkey-253d23.2	97	46.715
ENSDARG00000098661	AL935300.3	98	51.497	ENSDARG00000103827	znf1144	99	59.524

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098661	AL935300.3	71	46.763	ENSACIG00000008886	znf1164	74	46.763	Amphilophus_citrinellus
ENSDARG00000098661	AL935300.3	98	33.906	ENSAOCG00000021565	-	54	35.849	Amphiprion_ocellaris
ENSDARG00000098661	AL935300.3	77	43.169	ENSCSEG00000015585	-	85	43.169	Cynoglossus_semilaevis
ENSDARG00000098661	AL935300.3	58	43.382	ENSLBEG00000022939	-	63	35.071	Labrus_bergylta
ENSDARG00000098661	AL935300.3	95	46.000	ENSMZEG00005027943	-	68	41.346	Maylandia_zebra
ENSDARG00000098661	AL935300.3	73	44.248	ENSORLG00020019341	-	79	55.263	Oryzias_latipes_hni
ENSDARG00000098661	AL935300.3	89	45.517	ENSPKIG00000018633	-	58	45.517	Paramormyrops_kingsleyae
ENSDARG00000098661	AL935300.3	69	35.838	ENSSPAG00000009426	-	79	31.739	Stegastes_partitus