EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098666 (Gene tree)
Gene ID: 449943
Gene Symbol: si:dkey-93h22.8
Alias: fc32h05|fi41c08|im:7140483|wu:fc32h05|wu:fi41c08
Full Name: si:dkey-93h22.8
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 15048 bases
Position: chr11:45092866-45107913
Accession: ZDB-GENE-041008-203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134026	RRM_1	PF00076.22	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163408	-	4030	XM_021479601	ENSDARP00000134026	958 (aa)	XP_021335276	A0A0R4IHA5

Gene Model

Click here to download ENSDARG00000098666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098666	si:dkey-93h22.8	53	44.375	ENSDARG00000090337	pprc1	77	42.056

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098666	si:dkey-93h22.8	51	31.788	ENSAPOG00000001094	si:dkey-93h22.8	53	31.013	Acanthochromis_polyacanthus
ENSDARG00000098666	si:dkey-93h22.8	53	65.909	ENSAPEG00000014568	si:dkey-93h22.8	58	60.588	Amphiprion_percula
ENSDARG00000098666	si:dkey-93h22.8	59	59.740	ENSACLG00000019359	-	54	58.824	Astatotilapia_calliptera
ENSDARG00000098666	si:dkey-93h22.8	72	34.436	ENSAMXG00000020783	si:dkey-93h22.8	100	40.307	Astyanax_mexicanus
ENSDARG00000098666	si:dkey-93h22.8	56	60.145	ENSCCAG00000014910	PPRC1	81	40.304	Cebus_capucinus
ENSDARG00000098666	si:dkey-93h22.8	75	65.152	ENSGAFG00000011120	si:dkey-93h22.8	99	32.655	Gambusia_affinis
ENSDARG00000098666	si:dkey-93h22.8	59	59.740	ENSHBUG00000019347	-	54	58.824	Haplochromis_burtoni
ENSDARG00000098666	si:dkey-93h22.8	55	42.614	ENSIPUG00000007999	pprc1	54	48.077	Ictalurus_punctatus
ENSDARG00000098666	si:dkey-93h22.8	99	39.858	ENSIPUG00000021651	si:dkey-93h22.8	99	40.054	Ictalurus_punctatus
ENSDARG00000098666	si:dkey-93h22.8	69	62.879	ENSLBEG00000024075	-	59	58.333	Labrus_bergylta
ENSDARG00000098666	si:dkey-93h22.8	59	59.740	ENSMZEG00005008228	-	56	58.824	Maylandia_zebra
ENSDARG00000098666	si:dkey-93h22.8	63	37.725	ENSORLG00015002960	si:dkey-93h22.8	93	55.233	Oryzias_latipes_hsok
ENSDARG00000098666	si:dkey-93h22.8	82	60.000	ENSOMEG00000012140	si:dkey-93h22.8	93	60.119	Oryzias_melastigma
ENSDARG00000098666	si:dkey-93h22.8	53	70.769	ENSPKIG00000010691	pprc1	83	48.456	Paramormyrops_kingsleyae
ENSDARG00000098666	si:dkey-93h22.8	59	59.740	ENSPNYG00000002682	-	56	59.412	Pundamilia_nyererei
ENSDARG00000098666	si:dkey-93h22.8	58	61.745	ENSPNAG00000014869	pprc1	65	61.745	Pygocentrus_nattereri
ENSDARG00000098666	si:dkey-93h22.8	91	72.000	ENSPNAG00000023094	si:dkey-93h22.8	96	40.161	Pygocentrus_nattereri
ENSDARG00000098666	si:dkey-93h22.8	52	66.667	ENSSMAG00000005915	si:dkey-93h22.8	63	46.944	Scophthalmus_maximus
ENSDARG00000098666	si:dkey-93h22.8	59	61.783	ENSSPAG00000010602	si:dkey-93h22.8	88	39.709	Stegastes_partitus
ENSDARG00000098666	si:dkey-93h22.8	76	64.394	ENSXMAG00000000243	si:dkey-93h22.8	82	58.683	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003712	transcription coregulator activity	21873635.	IBA	Function
GO:0003712	transcription coregulator activity	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008134	transcription factor binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process
GO:0030374	nuclear receptor transcription coactivator activity	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0051091	positive regulation of DNA-binding transcription factor activity	21873635.	IBA	Process