EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098669 (Gene tree)
Gene ID: 751755
Gene Symbol: exd1
Alias: zgc:154068
Full Name: exonuclease 3'-5' domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5699 bases
Position: chr17:53324006-53329704
Accession: ZDB-GENE-060825-267
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134085	DNA_pol_A_exo1	PF01612.20	8.9e-10	1	1
ENSDARP00000145238	DNA_pol_A_exo1	PF01612.20	1.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000193895	-	1137	-	ENSDARP00000145238	378 (aa)	-	A0A2R8PWG1
ENSDART00000171082	-	1031	-	ENSDARP00000134085	305 (aa)	-	A0A0R4IJW8

Gene Model

Click here to download ENSDARG00000098669's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098669's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098669	exd1	85	40.684	ENSG00000178997	EXD1	63	36.034	Homo_sapiens
ENSDARG00000098669	exd1	86	51.866	ENSAPOG00000004287	-	74	55.022	Acanthochromis_polyacanthus
ENSDARG00000098669	exd1	85	40.304	ENSAMEG00000016793	EXD1	62	35.977	Ailuropoda_melanoleuca
ENSDARG00000098669	exd1	92	48.276	ENSAOCG00000009355	-	64	45.665	Amphiprion_ocellaris
ENSDARG00000098669	exd1	80	49.398	ENSAPEG00000002194	-	79	49.141	Amphiprion_percula
ENSDARG00000098669	exd1	81	50.598	ENSATEG00000002623	-	55	52.083	Anabas_testudineus
ENSDARG00000098669	exd1	62	40.000	ENSAPLG00000013650	-	94	40.000	Anas_platyrhynchos
ENSDARG00000098669	exd1	85	39.015	ENSACAG00000003676	EXD1	88	34.884	Anolis_carolinensis
ENSDARG00000098669	exd1	85	41.065	ENSANAG00000029058	EXD1	63	36.313	Aotus_nancymaae
ENSDARG00000098669	exd1	93	49.502	ENSACLG00000001361	-	64	47.674	Astatotilapia_calliptera
ENSDARG00000098669	exd1	93	51.724	ENSAMXG00000026016	-	68	47.414	Astyanax_mexicanus
ENSDARG00000098669	exd1	85	41.825	ENSBTAG00000008363	EXD1	55	41.825	Bos_taurus
ENSDARG00000098669	exd1	86	36.842	ENSCJAG00000020765	EXD1	61	36.842	Callithrix_jacchus
ENSDARG00000098669	exd1	85	41.445	ENSCAFG00000009510	EXD1	63	35.854	Canis_familiaris
ENSDARG00000098669	exd1	78	40.909	ENSCAFG00020005504	EXD1	57	40.909	Canis_lupus_dingo
ENSDARG00000098669	exd1	85	41.445	ENSCHIG00000019606	EXD1	63	35.817	Capra_hircus
ENSDARG00000098669	exd1	85	40.840	ENSCPOG00000010573	EXD1	61	35.942	Cavia_porcellus
ENSDARG00000098669	exd1	86	34.916	ENSCCAG00000016905	EXD1	62	34.916	Cebus_capucinus
ENSDARG00000098669	exd1	85	40.684	ENSCATG00000037400	EXD1	63	36.389	Cercocebus_atys
ENSDARG00000098669	exd1	82	39.764	ENSCHOG00000011441	EXD1	50	39.764	Choloepus_hoffmanni
ENSDARG00000098669	exd1	93	41.115	ENSCPBG00000013511	EXD1	59	36.538	Chrysemys_picta_bellii
ENSDARG00000098669	exd1	86	35.345	ENSCANG00000036848	EXD1	61	35.345	Colobus_angolensis_palliatus
ENSDARG00000098669	exd1	84	41.762	ENSCGRG00001011355	Exd1	61	35.854	Cricetulus_griseus_chok1gshd
ENSDARG00000098669	exd1	84	41.762	ENSCGRG00000011633	Exd1	63	35.854	Cricetulus_griseus_crigri
ENSDARG00000098669	exd1	90	48.043	ENSCSEG00000000904	-	64	45.266	Cynoglossus_semilaevis
ENSDARG00000098669	exd1	71	50.230	ENSCVAG00000013735	-	82	49.770	Cyprinodon_variegatus
ENSDARG00000098669	exd1	85	41.445	ENSDNOG00000011410	EXD1	63	36.565	Dasypus_novemcinctus
ENSDARG00000098669	exd1	71	44.240	ENSDORG00000012079	Exd1	56	40.892	Dipodomys_ordii
ENSDARG00000098669	exd1	71	38.710	ENSEBUG00000005530	-	77	38.710	Eptatretus_burgeri
ENSDARG00000098669	exd1	85	40.684	ENSEASG00005016394	EXD1	62	35.227	Equus_asinus_asinus
ENSDARG00000098669	exd1	85	40.684	ENSECAG00000021250	EXD1	63	35.475	Equus_caballus
ENSDARG00000098669	exd1	85	36.502	ENSEEUG00000001232	EXD1	53	36.502	Erinaceus_europaeus
ENSDARG00000098669	exd1	90	55.714	ENSELUG00000006324	-	64	49.728	Esox_lucius
ENSDARG00000098669	exd1	89	39.636	ENSFCAG00000028533	EXD1	66	34.946	Felis_catus
ENSDARG00000098669	exd1	64	52.821	ENSFHEG00000013765	-	72	52.821	Fundulus_heteroclitus
ENSDARG00000098669	exd1	73	49.561	ENSGMOG00000015956	-	92	44.444	Gadus_morhua
ENSDARG00000098669	exd1	88	39.483	ENSGALG00000041449	EXD1	95	35.097	Gallus_gallus
ENSDARG00000098669	exd1	92	49.827	ENSGAFG00000017161	-	67	46.839	Gambusia_affinis
ENSDARG00000098669	exd1	98	39.604	ENSGAGG00000019200	EXD1	62	35.263	Gopherus_agassizii
ENSDARG00000098669	exd1	85	40.684	ENSGGOG00000004594	EXD1	63	35.754	Gorilla_gorilla
ENSDARG00000098669	exd1	81	50.570	ENSHBUG00000017880	-	64	50.570	Haplochromis_burtoni
ENSDARG00000098669	exd1	85	40.840	ENSHGLG00000015369	EXD1	63	34.819	Heterocephalus_glaber_female
ENSDARG00000098669	exd1	86	40.755	ENSHGLG00100007398	EXD1	65	34.807	Heterocephalus_glaber_male
ENSDARG00000098669	exd1	82	49.407	ENSIPUG00000003370	-	70	50.204	Ictalurus_punctatus
ENSDARG00000098669	exd1	86	40.977	ENSSTOG00000014980	EXD1	63	35.734	Ictidomys_tridecemlineatus
ENSDARG00000098669	exd1	91	49.310	ENSLBEG00000000022	-	62	46.154	Labrus_bergylta
ENSDARG00000098669	exd1	75	54.741	ENSLBEG00000010957	-	85	50.746	Labrus_bergylta
ENSDARG00000098669	exd1	87	43.590	ENSLACG00000006680	EXD1	61	38.147	Latimeria_chalumnae
ENSDARG00000098669	exd1	99	49.196	ENSLOCG00000012278	-	89	47.246	Lepisosteus_oculatus
ENSDARG00000098669	exd1	88	40.959	ENSLAFG00000014739	EXD1	68	36.592	Loxodonta_africana
ENSDARG00000098669	exd1	85	40.684	ENSMFAG00000034670	EXD1	63	36.389	Macaca_fascicularis
ENSDARG00000098669	exd1	85	40.684	ENSMMUG00000013991	EXD1	63	36.389	Macaca_mulatta
ENSDARG00000098669	exd1	85	40.684	ENSMNEG00000037333	EXD1	63	36.389	Macaca_nemestrina
ENSDARG00000098669	exd1	69	44.286	ENSMLEG00000033153	EXD1	72	44.076	Mandrillus_leucophaeus
ENSDARG00000098669	exd1	80	48.810	ENSMAMG00000006592	exd1	62	48.810	Mastacembelus_armatus
ENSDARG00000098669	exd1	93	49.169	ENSMZEG00005009193	-	66	47.674	Maylandia_zebra
ENSDARG00000098669	exd1	84	38.868	ENSMGAG00000011179	EXD1	92	34.054	Meleagris_gallopavo
ENSDARG00000098669	exd1	84	42.146	ENSMAUG00000002698	Exd1	63	36.415	Mesocricetus_auratus
ENSDARG00000098669	exd1	85	41.445	ENSMICG00000014337	EXD1	62	36.034	Microcebus_murinus
ENSDARG00000098669	exd1	88	41.697	ENSMOCG00000018151	Exd1	65	36.240	Microtus_ochrogaster
ENSDARG00000098669	exd1	85	42.366	ENSMODG00000000164	EXD1	69	36.011	Monodelphis_domestica
ENSDARG00000098669	exd1	92	44.948	ENSMALG00000015814	-	75	42.462	Monopterus_albus
ENSDARG00000098669	exd1	88	42.066	MGP_CAROLIEiJ_G0024145	Exd1	64	36.339	Mus_caroli
ENSDARG00000098669	exd1	85	41.985	ENSMUSG00000048647	Exd1	63	35.655	Mus_musculus
ENSDARG00000098669	exd1	85	38.168	MGP_PahariEiJ_G0025588	Exd1	63	33.787	Mus_pahari
ENSDARG00000098669	exd1	85	41.985	MGP_SPRETEiJ_G0025061	Exd1	63	35.655	Mus_spretus
ENSDARG00000098669	exd1	69	44.762	ENSMPUG00000008811	EXD1	63	35.196	Mustela_putorius_furo
ENSDARG00000098669	exd1	85	41.445	ENSMLUG00000001466	EXD1	66	37.572	Myotis_lucifugus
ENSDARG00000098669	exd1	85	41.221	ENSNGAG00000002319	Exd1	63	34.540	Nannospalax_galili
ENSDARG00000098669	exd1	87	50.916	ENSNBRG00000003229	-	73	50.916	Neolamprologus_brichardi
ENSDARG00000098669	exd1	85	40.458	ENSNLEG00000003456	EXD1	51	40.304	Nomascus_leucogenys
ENSDARG00000098669	exd1	95	48.026	ENSONIG00000012043	-	88	47.904	Oreochromis_niloticus
ENSDARG00000098669	exd1	85	41.603	ENSOCUG00000013817	EXD1	52	41.603	Oryctolagus_cuniculus
ENSDARG00000098669	exd1	92	47.735	ENSORLG00000026344	-	70	44.540	Oryzias_latipes
ENSDARG00000098669	exd1	95	46.535	ENSORLG00020005465	-	70	44.857	Oryzias_latipes_hni
ENSDARG00000098669	exd1	92	48.084	ENSORLG00015004848	-	71	48.084	Oryzias_latipes_hsok
ENSDARG00000098669	exd1	96	46.865	ENSOMEG00000019812	-	69	45.217	Oryzias_melastigma
ENSDARG00000098669	exd1	85	39.773	ENSOGAG00000013095	EXD1	51	38.783	Otolemur_garnettii
ENSDARG00000098669	exd1	85	41.065	ENSOARG00000020330	EXD1	63	35.278	Ovis_aries
ENSDARG00000098669	exd1	85	40.304	ENSPPAG00000033760	EXD1	63	35.754	Pan_paniscus
ENSDARG00000098669	exd1	89	38.909	ENSPPRG00000011128	EXD1	66	34.483	Panthera_pardus
ENSDARG00000098669	exd1	89	38.909	ENSPTIG00000020026	EXD1	66	34.483	Panthera_tigris_altaica
ENSDARG00000098669	exd1	85	40.304	ENSPTRG00000006941	EXD1	63	35.754	Pan_troglodytes
ENSDARG00000098669	exd1	85	40.684	ENSPANG00000019000	EXD1	63	36.389	Papio_anubis
ENSDARG00000098669	exd1	89	49.821	ENSPKIG00000000671	-	70	44.595	Paramormyrops_kingsleyae
ENSDARG00000098669	exd1	90	41.429	ENSPSIG00000014473	EXD1	62	35.544	Pelodiscus_sinensis
ENSDARG00000098669	exd1	81	48.996	ENSPMGG00000015466	-	54	48.996	Periophthalmus_magnuspinnatus
ENSDARG00000098669	exd1	66	45.274	ENSPMAG00000000920	-	83	46.552	Petromyzon_marinus
ENSDARG00000098669	exd1	89	39.781	ENSPCIG00000027845	EXD1	74	34.054	Phascolarctos_cinereus
ENSDARG00000098669	exd1	93	49.492	ENSPFOG00000013673	-	90	46.328	Poecilia_formosa
ENSDARG00000098669	exd1	94	48.822	ENSPLAG00000014262	-	67	46.705	Poecilia_latipinna
ENSDARG00000098669	exd1	94	49.158	ENSPMEG00000012071	-	67	46.991	Poecilia_mexicana
ENSDARG00000098669	exd1	94	48.986	ENSPREG00000019468	-	67	46.552	Poecilia_reticulata
ENSDARG00000098669	exd1	85	40.684	ENSPPYG00000006369	EXD1	51	40.684	Pongo_abelii
ENSDARG00000098669	exd1	85	41.445	ENSPCOG00000026598	EXD1	51	41.445	Propithecus_coquereli
ENSDARG00000098669	exd1	85	41.065	ENSPVAG00000003149	EXD1	52	41.065	Pteropus_vampyrus
ENSDARG00000098669	exd1	99	53.651	ENSPNAG00000008931	exd1	79	49.606	Pygocentrus_nattereri
ENSDARG00000098669	exd1	85	42.366	ENSRNOG00000025360	Exd1	64	36.415	Rattus_norvegicus
ENSDARG00000098669	exd1	69	44.498	ENSRBIG00000037257	EXD1	87	38.111	Rhinopithecus_bieti
ENSDARG00000098669	exd1	85	40.684	ENSRROG00000034491	EXD1	63	36.389	Rhinopithecus_roxellana
ENSDARG00000098669	exd1	85	34.221	ENSSBOG00000024842	EXD1	59	31.564	Saimiri_boliviensis_boliviensis
ENSDARG00000098669	exd1	84	42.146	ENSSHAG00000016701	EXD1	67	36.313	Sarcophilus_harrisii
ENSDARG00000098669	exd1	63	53.368	ENSSFOG00015016852	-	57	53.368	Scleropages_formosus
ENSDARG00000098669	exd1	81	48.679	ENSSMAG00000005451	-	53	48.679	Scophthalmus_maximus
ENSDARG00000098669	exd1	89	52.347	ENSSDUG00000004368	exd1	60	48.521	Seriola_dumerili
ENSDARG00000098669	exd1	80	52.263	ENSSLDG00000021803	-	52	51.220	Seriola_lalandi_dorsalis
ENSDARG00000098669	exd1	85	41.445	ENSSARG00000009556	-	52	41.445	Sorex_araneus
ENSDARG00000098669	exd1	87	34.835	ENSSPUG00000001716	EXD1	57	34.320	Sphenodon_punctatus
ENSDARG00000098669	exd1	69	56.808	ENSSPAG00000023228	-	67	55.708	Stegastes_partitus
ENSDARG00000098669	exd1	85	41.825	ENSSSCG00000004752	EXD1	63	36.415	Sus_scrofa
ENSDARG00000098669	exd1	93	46.367	ENSTNIG00000017431	-	88	42.486	Tetraodon_nigroviridis
ENSDARG00000098669	exd1	78	34.298	ENSTBEG00000003085	EXD1	57	34.298	Tupaia_belangeri
ENSDARG00000098669	exd1	85	41.065	ENSTTRG00000009809	EXD1	51	41.065	Tursiops_truncatus
ENSDARG00000098669	exd1	85	41.065	ENSUMAG00000012170	EXD1	63	35.674	Ursus_maritimus
ENSDARG00000098669	exd1	85	41.065	ENSVPAG00000007758	EXD1	51	41.221	Vicugna_pacos
ENSDARG00000098669	exd1	85	41.445	ENSVVUG00000026704	EXD1	63	35.574	Vulpes_vulpes
ENSDARG00000098669	exd1	91	41.754	ENSXETG00000017895	exd1	88	39.244	Xenopus_tropicalis
ENSDARG00000098669	exd1	70	55.349	ENSXCOG00000010879	-	78	49.296	Xiphophorus_couchianus
ENSDARG00000098669	exd1	93	49.655	ENSXMAG00000014462	-	80	49.296	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0008408	3'-5' exonuclease activity	-	ISS	Function
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031047	gene silencing by RNA	-	ISS	Process
GO:0034587	piRNA metabolic process	-	ISS	Process
GO:0042803	protein homodimerization activity	-	ISS	Function
GO:0043186	P granule	-	ISS	Component
GO:0051321	meiotic cell cycle	-	IEA	Process
GO:1990923	PET complex	-	ISS	Component