EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098702 (Gene tree)
Gene ID: 571425
Gene Symbol: zgc:165603
Alias: -
Full Name: zgc:165603
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33720 bases
Position: chr2:53204750-53238469
Accession: ZDB-GENE-070620-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131196	RRM_1	PF00076.22	1.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163644	-	2012	-	ENSDARP00000131196	155 (aa)	-	A5PLG5

Gene Model

Click here to download ENSDARG00000098702's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098702's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098702	zgc:165603	58	87.179	ENSDARG00000070045	celf4	55	87.500
ENSDARG00000098702	zgc:165603	61	50.000	ENSDARG00000005315	celf1	99	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098702	zgc:165603	96	65.101	ENSAOCG00000012598	zgc:165603	66	61.074	Amphiprion_ocellaris
ENSDARG00000098702	zgc:165603	52	87.654	ENSAMXG00000036838	-	69	87.654	Astyanax_mexicanus
ENSDARG00000098702	zgc:165603	58	80.769	ENSBTAG00000019131	CELF3	52	81.818	Bos_taurus
ENSDARG00000098702	zgc:165603	99	82.468	ENSCVAG00000005395	zgc:165603	97	78.571	Cyprinodon_variegatus
ENSDARG00000098702	zgc:165603	53	82.927	ENSHCOG00000014147	-	76	82.927	Hippocampus_comes
ENSDARG00000098702	zgc:165603	64	84.848	ENSLACG00000009899	zgc:165603	77	84.848	Latimeria_chalumnae
ENSDARG00000098702	zgc:165603	57	83.117	ENSMUSG00000034818	Celf5	92	34.884	Mus_musculus
ENSDARG00000098702	zgc:165603	57	83.117	MGP_SPRETEiJ_G0016461	Celf5	92	34.884	Mus_spretus
ENSDARG00000098702	zgc:165603	99	68.182	ENSPKIG00000018966	zgc:165603	54	95.604	Paramormyrops_kingsleyae
ENSDARG00000098702	zgc:165603	99	83.117	ENSPLAG00000009650	zgc:165603	81	79.221	Poecilia_latipinna
ENSDARG00000098702	zgc:165603	99	67.532	ENSPMEG00000003804	zgc:165603	72	84.259	Poecilia_mexicana
ENSDARG00000098702	zgc:165603	58	80.769	ENSSBOG00000021984	CELF3	51	81.818	Saimiri_boliviensis_boliviensis
ENSDARG00000098702	zgc:165603	57	38.636	ENSXETG00000012296	celf3	62	38.636	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006397	mRNA processing	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component