EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000098923 (Gene tree)
Gene ID: 792293
Gene Symbol: zgc:173577
Alias: si:ch1073-186o8.2
Full Name: zgc:173577
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7436 bases
Position: chr3:7276432-7283867
Accession: ZDB-GENE-071004-55
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	1	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	2	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	3	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	4	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	5	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	6	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	7	8
ENSDARP00000136880	zf-C2H2	PF00096.26	7e-38	8	8
ENSDARP00000136880	zf-met	PF12874.7	9.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000158765	-	1178	-	ENSDARP00000136880	281 (aa)	-	A7MCA4

Gene Model

Click here to download ENSDARG00000098923's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000098923's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000098923	zgc:173577	91	63.978	ENSDARG00000110710	CU210890.1	94	63.978
ENSDARG00000098923	zgc:173577	96	61.111	ENSDARG00000099890	CU207221.2	99	61.111
ENSDARG00000098923	zgc:173577	96	52.174	ENSDARG00000071833	znf1162	84	52.174
ENSDARG00000098923	zgc:173577	90	61.809	ENSDARG00000088507	znf982	78	61.809
ENSDARG00000098923	zgc:173577	96	63.504	ENSDARG00000099172	BX000701.1	93	63.504
ENSDARG00000098923	zgc:173577	94	50.407	ENSDARG00000105295	LO017784.1	64	50.407
ENSDARG00000098923	zgc:173577	92	55.952	ENSDARG00000092605	znf1003	71	54.955
ENSDARG00000098923	zgc:173577	94	60.377	ENSDARG00000100587	zgc:113886	92	60.377
ENSDARG00000098923	zgc:173577	90	56.281	ENSDARG00000111899	zgc:171435	69	56.281
ENSDARG00000098923	zgc:173577	100	89.324	ENSDARG00000103530	zgc:113102	100	89.324
ENSDARG00000098923	zgc:173577	93	57.511	ENSDARG00000100361	znf1174	73	57.511
ENSDARG00000098923	zgc:173577	89	55.769	ENSDARG00000112141	znf1169	69	55.769
ENSDARG00000098923	zgc:173577	99	65.132	ENSDARG00000099731	CABZ01066719.1	99	64.474
ENSDARG00000098923	zgc:173577	96	68.670	ENSDARG00000103777	znf1001	99	68.670
ENSDARG00000098923	zgc:173577	97	62.171	ENSDARG00000098248	CABZ01081730.1	95	62.171
ENSDARG00000098923	zgc:173577	91	53.302	ENSDARG00000073821	znf1177	81	53.302
ENSDARG00000098923	zgc:173577	95	51.087	ENSDARG00000071714	znf983	92	56.410
ENSDARG00000098923	zgc:173577	94	60.377	ENSDARG00000093378	si:ch211-235i11.5	96	60.377
ENSDARG00000098923	zgc:173577	96	48.333	ENSDARG00000104065	znf1154	92	51.812
ENSDARG00000098923	zgc:173577	90	52.941	ENSDARG00000116814	CU570894.2	87	51.462
ENSDARG00000098923	zgc:173577	91	67.401	ENSDARG00000090740	zmp:0000001003	92	67.401
ENSDARG00000098923	zgc:173577	96	61.569	ENSDARG00000105056	znf45l	95	61.569
ENSDARG00000098923	zgc:173577	94	50.000	ENSDARG00000098898	si:ch211-255f4.2	99	50.000
ENSDARG00000098923	zgc:173577	99	60.825	ENSDARG00000102401	znf1001	100	60.825
ENSDARG00000098923	zgc:173577	96	57.870	ENSDARG00000101044	si:ch73-138e16.6	92	57.466
ENSDARG00000098923	zgc:173577	96	59.184	ENSDARG00000115326	znf1002	74	59.184
ENSDARG00000098923	zgc:173577	95	61.062	ENSDARG00000053165	zgc:113377	79	61.062
ENSDARG00000098923	zgc:173577	97	60.396	ENSDARG00000113011	zgc:113102	95	65.455
ENSDARG00000098923	zgc:173577	96	59.486	ENSDARG00000102411	CR847850.1	96	58.842
ENSDARG00000098923	zgc:173577	91	68.750	ENSDARG00000077712	zgc:113886	99	68.750
ENSDARG00000098923	zgc:173577	97	63.636	ENSDARG00000105074	BX000701.2	100	63.636
ENSDARG00000098923	zgc:173577	94	56.637	ENSDARG00000078814	si:dkey-34m19.3	79	56.637
ENSDARG00000098923	zgc:173577	94	51.711	ENSDARG00000078281	zgc:173575	87	51.292
ENSDARG00000098923	zgc:173577	93	63.320	ENSDARG00000109703	FO834825.1	83	63.320
ENSDARG00000098923	zgc:173577	99	69.149	ENSDARG00000106565	CABZ01066720.1	98	70.463
ENSDARG00000098923	zgc:173577	99	60.825	ENSDARG00000115857	znf1001	100	60.825
ENSDARG00000098923	zgc:173577	95	53.509	ENSDARG00000069869	zgc:113030	95	53.509
ENSDARG00000098923	zgc:173577	91	61.479	ENSDARG00000088051	AL935044.1	95	61.479
ENSDARG00000098923	zgc:173577	93	64.683	ENSDARG00000097521	si:dkey-111k8.5	89	64.683
ENSDARG00000098923	zgc:173577	97	62.500	ENSDARG00000100803	zgc:173517	95	62.171
ENSDARG00000098923	zgc:173577	97	56.863	ENSDARG00000091679	FO704858.1	98	56.863

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000098923	zgc:173577	99	45.695	ENSACIG00000008886	znf1164	80	45.695	Amphilophus_citrinellus
ENSDARG00000098923	zgc:173577	96	39.442	ENSACLG00000017449	-	58	39.442	Astatotilapia_calliptera
ENSDARG00000098923	zgc:173577	94	50.206	ENSAMXG00000043291	-	73	50.206	Astyanax_mexicanus
ENSDARG00000098923	zgc:173577	93	48.387	ENSEBUG00000015073	-	84	46.121	Eptatretus_burgeri
ENSDARG00000098923	zgc:173577	96	40.392	ENSMZEG00005022161	-	78	40.392	Maylandia_zebra
ENSDARG00000098923	zgc:173577	96	51.724	ENSMZEG00005027943	-	85	48.315	Maylandia_zebra
ENSDARG00000098923	zgc:173577	98	43.172	ENSONIG00000013908	-	100	43.172	Oreochromis_niloticus
ENSDARG00000098923	zgc:173577	96	41.631	ENSONIG00000003363	-	100	41.631	Oreochromis_niloticus
ENSDARG00000098923	zgc:173577	90	38.492	ENSONIG00000006585	-	100	38.492	Oreochromis_niloticus
ENSDARG00000098923	zgc:173577	94	42.268	ENSPFOG00000011766	-	100	42.268	Poecilia_formosa
ENSDARG00000098923	zgc:173577	96	34.091	ENSPREG00000005538	-	80	34.091	Poecilia_reticulata
ENSDARG00000098923	zgc:173577	89	40.976	ENSPNYG00000024183	zgc:173577	98	40.976	Pundamilia_nyererei
ENSDARG00000098923	zgc:173577	90	40.936	ENSSPAG00000009426	-	66	40.936	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function