EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000099256 (Gene tree)
Gene ID: 394176
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 53072 bases
Position: chr19:43037657-43090728
Accession: ZDB-GENE-030131-2074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140793	PUF	PF00806.19	1e-69	1	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	2	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	3	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	4	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	5	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	6	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	7	8
ENSDARP00000140793	PUF	PF00806.19	1e-69	8	8
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	1	6
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	2	6
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	3	6
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	4	6
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	5	6
ENSDARP00000131349	PUF	PF00806.19	1.1e-52	6	6

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000184771	-	1969	-	ENSDARP00000149400	540 (aa)	-	A0A2R8Q5R2
ENSDART00000161961	-	660	-	-	- (aa)	-	-
ENSDART00000157961	-	721	-	-	- (aa)	-	-
ENSDART00000165202	-	399	-	ENSDARP00000141593	102 (aa)	-	A0A0R4IZ63
ENSDART00000164453	-	3228	-	ENSDARP00000131349	1042 (aa)	-	A0A0R4IE22
ENSDART00000168263	-	3560	-	ENSDARP00000140793	1152 (aa)	-	A0A0R4IWL6

Gene Model

Click here to download ENSDARG00000099256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000099256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000099256	pum1	95	65.106	ENSDARG00000061040	pum2	94	64.342

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000099256	pum1	95	93.750	ENSG00000134644	PUM1	98	92.995	Homo_sapiens
ENSDARG00000099256	pum1	100	81.610	ENSAPOG00000021632	pum1	100	94.699	Acanthochromis_polyacanthus
ENSDARG00000099256	pum1	100	79.466	ENSAMEG00000017656	PUM1	97	79.048	Ailuropoda_melanoleuca
ENSDARG00000099256	pum1	100	81.772	ENSACIG00000021013	pum1	100	84.340	Amphilophus_citrinellus
ENSDARG00000099256	pum1	100	81.610	ENSAOCG00000003944	pum1	100	94.699	Amphiprion_ocellaris
ENSDARG00000099256	pum1	100	81.610	ENSAPEG00000014550	pum1	100	94.699	Amphiprion_percula
ENSDARG00000099256	pum1	100	81.356	ENSATEG00000016004	pum1	100	94.699	Anabas_testudineus
ENSDARG00000099256	pum1	100	79.950	ENSAPLG00000009351	PUM1	100	79.616	Anas_platyrhynchos
ENSDARG00000099256	pum1	100	79.062	ENSACAG00000000682	PUM1	98	79.313	Anolis_carolinensis
ENSDARG00000099256	pum1	95	93.421	ENSANAG00000027865	PUM1	100	92.754	Aotus_nancymaae
ENSDARG00000099256	pum1	91	82.183	ENSACLG00000019354	pum1	100	85.182	Astatotilapia_calliptera
ENSDARG00000099256	pum1	100	95.139	ENSAMXG00000020607	pum1	96	95.139	Astyanax_mexicanus
ENSDARG00000099256	pum1	95	94.408	ENSBTAG00000018979	PUM1	100	93.478	Bos_taurus
ENSDARG00000099256	pum1	95	93.750	ENSCJAG00000006035	PUM1	100	92.995	Callithrix_jacchus
ENSDARG00000099256	pum1	100	78.757	ENSCAFG00000011205	PUM1	100	78.589	Canis_familiaris
ENSDARG00000099256	pum1	87	92.995	ENSCAFG00020024616	PUM1	98	92.995	Canis_lupus_dingo
ENSDARG00000099256	pum1	95	93.750	ENSCHIG00000012952	PUM1	100	92.995	Capra_hircus
ENSDARG00000099256	pum1	100	79.532	ENSTSYG00000008868	PUM1	100	84.864	Carlito_syrichta
ENSDARG00000099256	pum1	100	79.198	ENSCPOG00000031613	PUM1	100	84.491	Cavia_porcellus
ENSDARG00000099256	pum1	95	94.408	ENSCATG00000017991	PUM1	100	84.864	Cercocebus_atys
ENSDARG00000099256	pum1	95	93.092	ENSCLAG00000007662	PUM1	100	84.491	Chinchilla_lanigera
ENSDARG00000099256	pum1	100	78.477	ENSCSAG00000001028	PUM1	100	78.228	Chlorocebus_sabaeus
ENSDARG00000099256	pum1	93	69.242	ENSCHOG00000010245	PUM1	93	69.671	Choloepus_hoffmanni
ENSDARG00000099256	pum1	95	94.408	ENSCPBG00000009288	PUM1	100	85.112	Chrysemys_picta_bellii
ENSDARG00000099256	pum1	95	93.750	ENSCANG00000042606	PUM1	100	92.995	Colobus_angolensis_palliatus
ENSDARG00000099256	pum1	100	79.331	ENSCGRG00001024949	Pum1	100	84.596	Cricetulus_griseus_chok1gshd
ENSDARG00000099256	pum1	100	79.331	ENSCGRG00000014197	Pum1	100	84.596	Cricetulus_griseus_crigri
ENSDARG00000099256	pum1	91	81.623	ENSCSEG00000015981	pum1	100	84.902	Cynoglossus_semilaevis
ENSDARG00000099256	pum1	100	80.508	ENSCVAG00000007043	pum1	100	83.065	Cyprinodon_variegatus
ENSDARG00000099256	pum1	100	79.532	ENSDNOG00000010939	PUM1	100	79.198	Dasypus_novemcinctus
ENSDARG00000099256	pum1	86	92.512	ENSDORG00000001875	Pum1	100	61.460	Dipodomys_ordii
ENSDARG00000099256	pum1	90	74.508	ENSETEG00000004355	PUM1	87	75.969	Echinops_telfairi
ENSDARG00000099256	pum1	100	79.515	ENSEASG00005010813	PUM1	100	79.264	Equus_asinus_asinus
ENSDARG00000099256	pum1	100	79.365	ENSECAG00000021369	PUM1	100	79.114	Equus_caballus
ENSDARG00000099256	pum1	77	92.889	ENSEEUG00000003871	PUM1	74	92.889	Erinaceus_europaeus
ENSDARG00000099256	pum1	100	82.040	ENSELUG00000002409	pum1	100	89.474	Esox_lucius
ENSDARG00000099256	pum1	95	94.408	ENSFCAG00000010374	PUM1	100	93.478	Felis_catus
ENSDARG00000099256	pum1	100	79.201	ENSFALG00000001214	PUM1	97	78.869	Ficedula_albicollis
ENSDARG00000099256	pum1	100	79.198	ENSFDAG00000011319	PUM1	100	84.491	Fukomys_damarensis
ENSDARG00000099256	pum1	96	92.987	ENSGALG00000042598	PUM1	98	93.125	Gallus_gallus
ENSDARG00000099256	pum1	100	80.847	ENSGAFG00000015617	pum1	100	93.735	Gambusia_affinis
ENSDARG00000099256	pum1	99	80.750	ENSGACG00000005717	pum1	100	83.319	Gasterosteus_aculeatus
ENSDARG00000099256	pum1	96	93.247	ENSGAGG00000001290	PUM1	98	93.333	Gopherus_agassizii
ENSDARG00000099256	pum1	95	93.750	ENSGGOG00000011983	PUM1	100	92.995	Gorilla_gorilla
ENSDARG00000099256	pum1	100	81.186	ENSHBUG00000018718	pum1	100	83.912	Haplochromis_burtoni
ENSDARG00000099256	pum1	100	79.114	ENSHGLG00000013819	Pum1	100	84.367	Heterocephalus_glaber_female
ENSDARG00000099256	pum1	100	79.114	ENSHGLG00100008621	Pum1	100	84.367	Heterocephalus_glaber_male
ENSDARG00000099256	pum1	100	93.788	ENSIPUG00000020421	pum1	100	93.788	Ictalurus_punctatus
ENSDARG00000099256	pum1	100	79.599	ENSSTOG00000010757	PUM1	100	84.864	Ictidomys_tridecemlineatus
ENSDARG00000099256	pum1	100	79.431	ENSJJAG00000000530	Pum1	100	84.864	Jaculus_jaculus
ENSDARG00000099256	pum1	100	81.017	ENSKMAG00000003481	pum1	100	83.489	Kryptolebias_marmoratus
ENSDARG00000099256	pum1	100	80.662	ENSLBEG00000002527	pum1	100	83.136	Labrus_bergylta
ENSDARG00000099256	pum1	100	76.628	ENSLACG00000017188	PUM1	99	76.461	Latimeria_chalumnae
ENSDARG00000099256	pum1	100	84.131	ENSLOCG00000005210	pum1	99	83.459	Lepisosteus_oculatus
ENSDARG00000099256	pum1	100	78.428	ENSLAFG00000003178	PUM1	100	78.679	Loxodonta_africana
ENSDARG00000099256	pum1	95	94.408	ENSMFAG00000010291	PUM1	100	93.478	Macaca_fascicularis
ENSDARG00000099256	pum1	95	93.750	ENSMMUG00000013520	PUM1	100	92.995	Macaca_mulatta
ENSDARG00000099256	pum1	95	93.750	ENSMNEG00000034639	PUM1	100	92.995	Macaca_nemestrina
ENSDARG00000099256	pum1	95	93.750	ENSMLEG00000038743	PUM1	100	92.995	Mandrillus_leucophaeus
ENSDARG00000099256	pum1	100	81.102	ENSMAMG00000011606	pum1	100	83.827	Mastacembelus_armatus
ENSDARG00000099256	pum1	100	81.186	ENSMZEG00005005834	pum1	100	83.912	Maylandia_zebra
ENSDARG00000099256	pum1	100	79.849	ENSMGAG00000000724	PUM1	100	80.585	Meleagris_gallopavo
ENSDARG00000099256	pum1	100	79.414	ENSMAUG00000022090	Pum1	100	84.950	Mesocricetus_auratus
ENSDARG00000099256	pum1	95	93.750	ENSMICG00000007713	-	100	93.237	Microcebus_murinus
ENSDARG00000099256	pum1	93	89.880	ENSMICG00000012213	-	100	89.880	Microcebus_murinus
ENSDARG00000099256	pum1	100	79.599	ENSMOCG00000015463	Pum1	100	84.845	Microtus_ochrogaster
ENSDARG00000099256	pum1	81	93.253	ENSMMOG00000019817	pum1	100	94.940	Mola_mola
ENSDARG00000099256	pum1	100	78.881	ENSMODG00000017067	PUM1	100	79.048	Monodelphis_domestica
ENSDARG00000099256	pum1	100	78.930	MGP_CAROLIEiJ_G0026549	Pum1	100	84.491	Mus_caroli
ENSDARG00000099256	pum1	100	78.930	ENSMUSG00000028580	Pum1	100	84.367	Mus_musculus
ENSDARG00000099256	pum1	100	78.846	MGP_PahariEiJ_G0028881	Pum1	100	84.367	Mus_pahari
ENSDARG00000099256	pum1	100	78.846	MGP_SPRETEiJ_G0027529	Pum1	100	84.367	Mus_spretus
ENSDARG00000099256	pum1	100	79.515	ENSMPUG00000015454	PUM1	100	79.264	Mustela_putorius_furo
ENSDARG00000099256	pum1	100	79.365	ENSMLUG00000006490	PUM1	100	78.947	Myotis_lucifugus
ENSDARG00000099256	pum1	100	79.348	ENSNGAG00000002378	Pum1	100	84.864	Nannospalax_galili
ENSDARG00000099256	pum1	80	87.141	ENSNBRG00000010689	pum1	100	89.401	Neolamprologus_brichardi
ENSDARG00000099256	pum1	95	89.614	ENSNLEG00000001151	PUM1	100	89.614	Nomascus_leucogenys
ENSDARG00000099256	pum1	72	82.971	ENSMEUG00000000976	-	69	88.889	Notamacropus_eugenii
ENSDARG00000099256	pum1	83	91.440	ENSOPRG00000001776	PUM1	70	92.213	Ochotona_princeps
ENSDARG00000099256	pum1	100	79.181	ENSODEG00000003465	PUM1	100	84.367	Octodon_degus
ENSDARG00000099256	pum1	100	81.525	ENSONIG00000002290	pum1	100	84.081	Oreochromis_niloticus
ENSDARG00000099256	pum1	84	65.779	ENSOANG00000004902	-	100	66.189	Ornithorhynchus_anatinus
ENSDARG00000099256	pum1	99	79.331	ENSOCUG00000008641	PUM1	99	79.079	Oryctolagus_cuniculus
ENSDARG00000099256	pum1	100	81.065	ENSORLG00000011482	pum1	100	83.277	Oryzias_latipes
ENSDARG00000099256	pum1	100	81.065	ENSORLG00020019461	pum1	100	83.108	Oryzias_latipes_hni
ENSDARG00000099256	pum1	100	81.150	ENSORLG00015011375	pum1	100	83.193	Oryzias_latipes_hsok
ENSDARG00000099256	pum1	86	94.458	ENSOMEG00000009312	pum1	100	94.458	Oryzias_melastigma
ENSDARG00000099256	pum1	100	76.962	ENSOGAG00000011063	PUM1	100	76.628	Otolemur_garnettii
ENSDARG00000099256	pum1	95	93.750	ENSOARG00000001899	PUM1	100	92.995	Ovis_aries
ENSDARG00000099256	pum1	95	93.750	ENSPPAG00000044003	PUM1	100	92.995	Pan_paniscus
ENSDARG00000099256	pum1	100	79.766	ENSPPRG00000001370	PUM1	100	85.112	Panthera_pardus
ENSDARG00000099256	pum1	100	79.599	ENSPTIG00000010798	PUM1	100	84.864	Panthera_tigris_altaica
ENSDARG00000099256	pum1	95	93.750	ENSPTRG00000000453	PUM1	100	92.995	Pan_troglodytes
ENSDARG00000099256	pum1	95	94.408	ENSPANG00000016338	PUM1	100	93.478	Papio_anubis
ENSDARG00000099256	pum1	100	79.614	ENSPKIG00000010578	pum1	100	78.523	Paramormyrops_kingsleyae
ENSDARG00000099256	pum1	100	79.515	ENSPSIG00000014118	PUM1	100	79.599	Pelodiscus_sinensis
ENSDARG00000099256	pum1	80	84.178	ENSPMGG00000005836	pum1	100	87.407	Periophthalmus_magnuspinnatus
ENSDARG00000099256	pum1	100	79.414	ENSPEMG00000010009	Pum1	100	84.950	Peromyscus_maniculatus_bairdii
ENSDARG00000099256	pum1	95	94.079	ENSPCIG00000014151	PUM1	100	84.634	Phascolarctos_cinereus
ENSDARG00000099256	pum1	95	82.327	ENSPFOG00000007289	pum1	99	87.211	Poecilia_formosa
ENSDARG00000099256	pum1	100	79.308	ENSPLAG00000007256	pum1	100	83.716	Poecilia_latipinna
ENSDARG00000099256	pum1	91	82.468	ENSPMEG00000019543	pum1	99	84.245	Poecilia_mexicana
ENSDARG00000099256	pum1	100	80.541	ENSPREG00000005195	pum1	100	86.903	Poecilia_reticulata
ENSDARG00000099256	pum1	100	78.033	ENSPPYG00000001621	PUM1	100	77.787	Pongo_abelii
ENSDARG00000099256	pum1	77	93.519	ENSPCAG00000001979	PUM1	74	93.519	Procavia_capensis
ENSDARG00000099256	pum1	95	93.750	ENSPCOG00000004398	PUM1	100	93.237	Propithecus_coquereli
ENSDARG00000099256	pum1	100	78.453	ENSPVAG00000005207	PUM1	97	77.258	Pteropus_vampyrus
ENSDARG00000099256	pum1	100	81.864	ENSPNYG00000009518	pum1	100	84.819	Pundamilia_nyererei
ENSDARG00000099256	pum1	100	95.139	ENSPNAG00000026728	pum1	100	95.139	Pygocentrus_nattereri
ENSDARG00000099256	pum1	100	79.181	ENSRNOG00000011709	Pum1	100	78.846	Rattus_norvegicus
ENSDARG00000099256	pum1	95	94.408	ENSRBIG00000042521	PUM1	100	93.478	Rhinopithecus_bieti
ENSDARG00000099256	pum1	95	93.750	ENSRROG00000020156	PUM1	100	92.995	Rhinopithecus_roxellana
ENSDARG00000099256	pum1	95	93.750	ENSSBOG00000032037	PUM1	100	92.995	Saimiri_boliviensis_boliviensis
ENSDARG00000099256	pum1	100	78.715	ENSSHAG00000010918	PUM1	100	78.881	Sarcophilus_harrisii
ENSDARG00000099256	pum1	100	81.271	ENSSMAG00000010918	pum1	100	83.489	Scophthalmus_maximus
ENSDARG00000099256	pum1	100	81.610	ENSSDUG00000009021	pum1	100	84.166	Seriola_dumerili
ENSDARG00000099256	pum1	93	81.723	ENSSLDG00000009667	pum1	100	84.342	Seriola_lalandi_dorsalis
ENSDARG00000099256	pum1	94	82.011	ENSSARG00000003055	PUM1	91	81.229	Sorex_araneus
ENSDARG00000099256	pum1	100	79.849	ENSSPUG00000006267	PUM1	100	79.515	Sphenodon_punctatus
ENSDARG00000099256	pum1	100	81.610	ENSSPAG00000016636	pum1	100	94.699	Stegastes_partitus
ENSDARG00000099256	pum1	95	94.408	ENSSSCG00000003591	PUM1	100	93.478	Sus_scrofa
ENSDARG00000099256	pum1	100	81.441	ENSTRUG00000013121	pum1	100	89.277	Takifugu_rubripes
ENSDARG00000099256	pum1	100	80.390	ENSTNIG00000016983	pum1	99	83.067	Tetraodon_nigroviridis
ENSDARG00000099256	pum1	91	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSDARG00000099256	pum1	93	81.718	ENSTTRG00000007436	PUM1	89	81.461	Tursiops_truncatus
ENSDARG00000099256	pum1	100	78.269	ENSUAMG00000018262	-	100	77.993	Ursus_americanus
ENSDARG00000099256	pum1	95	94.408	ENSUMAG00000009211	PUM1	100	93.478	Ursus_maritimus
ENSDARG00000099256	pum1	93	85.980	ENSVPAG00000005902	PUM1	92	85.484	Vicugna_pacos
ENSDARG00000099256	pum1	95	94.408	ENSVVUG00000014631	PUM1	100	93.478	Vulpes_vulpes
ENSDARG00000099256	pum1	100	76.171	ENSXETG00000012904	pum1	99	76.003	Xenopus_tropicalis
ENSDARG00000099256	pum1	100	80.254	ENSXMAG00000002945	pum1	100	83.507	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process