EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000099280 (Gene tree)
Gene ID: 557849
Gene Symbol: utp20
Alias: im:7159098|wu:fb83c08
Full Name: UTP20 small subunit (SSU) processome component
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 42010 bases
Position: chr4:5868034-5910043
Accession: ZDB-GENE-080225-38
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138699	DRIM	PF07539.12	1.8e-174	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000166591	-	8385	XM_009300013	ENSDARP00000138699	2794 (aa)	XP_009298288	A0A0R4IQW7

Gene Model

Click here to download ENSDARG00000099280's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000099280's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000099280	utp20	99	57.311	ENSG00000120800	UTP20	99	57.062	Homo_sapiens
ENSDARG00000099280	utp20	99	66.276	ENSAPOG00000002429	utp20	99	66.193	Acanthochromis_polyacanthus
ENSDARG00000099280	utp20	99	57.229	ENSAMEG00000016416	UTP20	99	56.642	Ailuropoda_melanoleuca
ENSDARG00000099280	utp20	99	66.215	ENSACIG00000007987	utp20	99	65.671	Amphilophus_citrinellus
ENSDARG00000099280	utp20	60	66.490	ENSAOCG00000015055	utp20	96	66.549	Amphiprion_ocellaris
ENSDARG00000099280	utp20	99	66.133	ENSAPEG00000011605	utp20	99	66.276	Amphiprion_percula
ENSDARG00000099280	utp20	98	66.365	ENSATEG00000005601	utp20	100	66.450	Anabas_testudineus
ENSDARG00000099280	utp20	99	57.301	ENSAPLG00000015651	UTP20	99	57.454	Anas_platyrhynchos
ENSDARG00000099280	utp20	99	57.685	ENSACAG00000011671	UTP20	99	57.472	Anolis_carolinensis
ENSDARG00000099280	utp20	99	55.635	ENSANAG00000027152	UTP20	99	55.300	Aotus_nancymaae
ENSDARG00000099280	utp20	95	67.706	ENSACLG00000008064	utp20	99	67.394	Astatotilapia_calliptera
ENSDARG00000099280	utp20	99	73.570	ENSAMXG00000021039	utp20	99	73.276	Astyanax_mexicanus
ENSDARG00000099280	utp20	99	57.372	ENSBTAG00000003239	UTP20	99	57.016	Bos_taurus
ENSDARG00000099280	utp20	99	56.990	ENSCJAG00000001913	UTP20	99	56.529	Callithrix_jacchus
ENSDARG00000099280	utp20	99	57.112	ENSCAFG00000006964	UTP20	99	56.726	Canis_familiaris
ENSDARG00000099280	utp20	99	57.077	ENSCAFG00020024305	UTP20	99	56.726	Canis_lupus_dingo
ENSDARG00000099280	utp20	99	57.194	ENSCHIG00000009221	UTP20	99	56.731	Capra_hircus
ENSDARG00000099280	utp20	99	56.548	ENSTSYG00000003040	UTP20	99	56.072	Carlito_syrichta
ENSDARG00000099280	utp20	99	53.725	ENSCAPG00000014920	UTP20	99	53.046	Cavia_aperea
ENSDARG00000099280	utp20	99	55.299	ENSCPOG00000003129	UTP20	99	54.936	Cavia_porcellus
ENSDARG00000099280	utp20	99	57.067	ENSCCAG00000031422	UTP20	99	56.604	Cebus_capucinus
ENSDARG00000099280	utp20	99	55.485	ENSCATG00000035636	UTP20	99	54.901	Cercocebus_atys
ENSDARG00000099280	utp20	99	55.999	ENSCLAG00000011569	UTP20	99	56.070	Chinchilla_lanigera
ENSDARG00000099280	utp20	99	57.336	ENSCSAG00000003388	UTP20	99	57.026	Chlorocebus_sabaeus
ENSDARG00000099280	utp20	90	63.636	ENSCHOG00000003532	UTP20	94	63.636	Choloepus_hoffmanni
ENSDARG00000099280	utp20	95	58.072	ENSCPBG00000004844	UTP20	99	57.881	Chrysemys_picta_bellii
ENSDARG00000099280	utp20	97	58.134	ENSCANG00000034768	UTP20	99	56.767	Colobus_angolensis_palliatus
ENSDARG00000099280	utp20	99	56.616	ENSCGRG00001017151	Utp20	99	56.234	Cricetulus_griseus_chok1gshd
ENSDARG00000099280	utp20	99	56.277	ENSCGRG00000008595	Utp20	99	55.895	Cricetulus_griseus_crigri
ENSDARG00000099280	utp20	98	63.755	ENSCSEG00000014760	utp20	100	63.259	Cynoglossus_semilaevis
ENSDARG00000099280	utp20	99	63.068	ENSCVAG00000001727	utp20	100	63.068	Cyprinodon_variegatus
ENSDARG00000099280	utp20	99	56.398	ENSDNOG00000016845	UTP20	99	56.383	Dasypus_novemcinctus
ENSDARG00000099280	utp20	96	59.366	ENSDORG00000014762	Utp20	99	58.870	Dipodomys_ordii
ENSDARG00000099280	utp20	91	72.059	ENSETEG00000019983	UTP20	91	72.059	Echinops_telfairi
ENSDARG00000099280	utp20	95	61.561	ENSEASG00005019981	UTP20	99	61.561	Equus_asinus_asinus
ENSDARG00000099280	utp20	95	61.561	ENSECAG00000006876	UTP20	99	61.561	Equus_caballus
ENSDARG00000099280	utp20	72	66.071	ENSEEUG00000003774	UTP20	75	61.765	Erinaceus_europaeus
ENSDARG00000099280	utp20	99	67.030	ENSELUG00000000798	utp20	99	67.300	Esox_lucius
ENSDARG00000099280	utp20	99	57.427	ENSFCAG00000006150	UTP20	99	56.985	Felis_catus
ENSDARG00000099280	utp20	94	55.844	ENSFALG00000011135	UTP20	99	55.991	Ficedula_albicollis
ENSDARG00000099280	utp20	93	52.575	ENSFDAG00000007567	UTP20	96	52.454	Fukomys_damarensis
ENSDARG00000099280	utp20	97	64.564	ENSFHEG00000004142	utp20	100	64.584	Fundulus_heteroclitus
ENSDARG00000099280	utp20	99	59.893	ENSGMOG00000006762	utp20	100	59.894	Gadus_morhua
ENSDARG00000099280	utp20	99	56.981	ENSGALG00000011643	UTP20	99	57.204	Gallus_gallus
ENSDARG00000099280	utp20	97	63.616	ENSGAFG00000006986	utp20	100	63.412	Gambusia_affinis
ENSDARG00000099280	utp20	99	64.023	ENSGACG00000019092	utp20	99	63.826	Gasterosteus_aculeatus
ENSDARG00000099280	utp20	67	60.350	ENSGAGG00000011169	UTP20	97	60.234	Gopherus_agassizii
ENSDARG00000099280	utp20	99	56.757	ENSGGOG00000004904	UTP20	99	56.746	Gorilla_gorilla
ENSDARG00000099280	utp20	99	66.002	ENSHBUG00000010613	utp20	99	66.001	Haplochromis_burtoni
ENSDARG00000099280	utp20	99	56.027	ENSHGLG00000006422	UTP20	99	55.864	Heterocephalus_glaber_female
ENSDARG00000099280	utp20	99	54.652	ENSHGLG00100001086	UTP20	99	54.494	Heterocephalus_glaber_male
ENSDARG00000099280	utp20	94	69.925	ENSHCOG00000005421	utp20	97	69.925	Hippocampus_comes
ENSDARG00000099280	utp20	99	74.360	ENSIPUG00000013717	utp20	99	74.202	Ictalurus_punctatus
ENSDARG00000099280	utp20	99	57.259	ENSSTOG00000015995	UTP20	99	57.067	Ictidomys_tridecemlineatus
ENSDARG00000099280	utp20	99	55.023	ENSJJAG00000019321	Utp20	99	55.002	Jaculus_jaculus
ENSDARG00000099280	utp20	99	62.811	ENSKMAG00000005972	utp20	99	62.736	Kryptolebias_marmoratus
ENSDARG00000099280	utp20	98	65.153	ENSLBEG00000000781	utp20	100	65.079	Labrus_bergylta
ENSDARG00000099280	utp20	79	60.262	ENSLACG00000010098	UTP20	99	59.937	Latimeria_chalumnae
ENSDARG00000099280	utp20	86	72.674	ENSLOCG00000015197	utp20	92	72.674	Lepisosteus_oculatus
ENSDARG00000099280	utp20	99	56.420	ENSLAFG00000012983	UTP20	99	56.142	Loxodonta_africana
ENSDARG00000099280	utp20	99	57.300	ENSMFAG00000037766	UTP20	99	57.026	Macaca_fascicularis
ENSDARG00000099280	utp20	99	57.336	ENSMMUG00000012891	UTP20	99	57.062	Macaca_mulatta
ENSDARG00000099280	utp20	99	55.844	ENSMNEG00000037418	UTP20	99	55.473	Macaca_nemestrina
ENSDARG00000099280	utp20	99	55.674	ENSMLEG00000029148	UTP20	99	55.354	Mandrillus_leucophaeus
ENSDARG00000099280	utp20	99	66.869	ENSMAMG00000002063	utp20	99	66.785	Mastacembelus_armatus
ENSDARG00000099280	utp20	99	66.075	ENSMZEG00005018123	utp20	99	65.896	Maylandia_zebra
ENSDARG00000099280	utp20	99	56.890	ENSMGAG00000011726	UTP20	99	56.966	Meleagris_gallopavo
ENSDARG00000099280	utp20	65	54.970	ENSMAUG00000011898	Utp20	99	54.920	Mesocricetus_auratus
ENSDARG00000099280	utp20	99	55.370	ENSMICG00000015736	UTP20	99	54.991	Microcebus_murinus
ENSDARG00000099280	utp20	99	55.488	ENSMOCG00000015242	Utp20	99	55.362	Microtus_ochrogaster
ENSDARG00000099280	utp20	99	61.099	ENSMMOG00000003360	utp20	99	60.780	Mola_mola
ENSDARG00000099280	utp20	99	56.829	ENSMODG00000003141	UTP20	99	56.728	Monodelphis_domestica
ENSDARG00000099280	utp20	99	65.125	ENSMALG00000002723	utp20	99	65.265	Monopterus_albus
ENSDARG00000099280	utp20	99	56.386	MGP_CAROLIEiJ_G0015713	Utp20	99	56.108	Mus_caroli
ENSDARG00000099280	utp20	99	56.859	ENSMUSG00000004356	Utp20	99	56.483	Mus_musculus
ENSDARG00000099280	utp20	99	56.539	MGP_PahariEiJ_G0031372	Utp20	99	56.230	Mus_pahari
ENSDARG00000099280	utp20	99	56.625	MGP_SPRETEiJ_G0016531	Utp20	90	71.429	Mus_spretus
ENSDARG00000099280	utp20	99	57.275	ENSMPUG00000011641	UTP20	99	56.965	Mustela_putorius_furo
ENSDARG00000099280	utp20	99	57.361	ENSMLUG00000002313	UTP20	99	56.860	Myotis_lucifugus
ENSDARG00000099280	utp20	99	56.868	ENSNGAG00000013738	Utp20	99	56.397	Nannospalax_galili
ENSDARG00000099280	utp20	80	78.788	ENSNBRG00000019464	utp20	99	78.788	Neolamprologus_brichardi
ENSDARG00000099280	utp20	99	57.117	ENSNLEG00000006166	UTP20	99	57.082	Nomascus_leucogenys
ENSDARG00000099280	utp20	90	56.787	ENSMEUG00000015457	UTP20	87	60.976	Notamacropus_eugenii
ENSDARG00000099280	utp20	86	73.885	ENSOPRG00000010546	UTP20	87	73.885	Ochotona_princeps
ENSDARG00000099280	utp20	99	56.087	ENSODEG00000013411	UTP20	99	55.374	Octodon_degus
ENSDARG00000099280	utp20	99	66.337	ENSONIG00000009910	utp20	99	66.171	Oreochromis_niloticus
ENSDARG00000099280	utp20	99	56.714	ENSOANG00000005578	UTP20	99	56.469	Ornithorhynchus_anatinus
ENSDARG00000099280	utp20	99	57.422	ENSOCUG00000010475	UTP20	99	57.011	Oryctolagus_cuniculus
ENSDARG00000099280	utp20	94	65.570	ENSORLG00000008900	utp20	100	65.196	Oryzias_latipes
ENSDARG00000099280	utp20	94	65.657	ENSORLG00020005879	utp20	100	65.196	Oryzias_latipes_hni
ENSDARG00000099280	utp20	96	65.657	ENSORLG00015002843	utp20	100	65.196	Oryzias_latipes_hsok
ENSDARG00000099280	utp20	98	62.819	ENSOMEG00000023583	utp20	100	62.745	Oryzias_melastigma
ENSDARG00000099280	utp20	99	57.178	ENSOGAG00000015130	UTP20	99	56.787	Otolemur_garnettii
ENSDARG00000099280	utp20	99	57.295	ENSOARG00000014722	UTP20	99	56.889	Ovis_aries
ENSDARG00000099280	utp20	99	57.382	ENSPPAG00000001381	UTP20	99	57.138	Pan_paniscus
ENSDARG00000099280	utp20	99	57.498	ENSPPRG00000001026	UTP20	99	57.021	Panthera_pardus
ENSDARG00000099280	utp20	99	57.498	ENSPTIG00000020972	UTP20	99	56.985	Panthera_tigris_altaica
ENSDARG00000099280	utp20	99	57.382	ENSPTRG00000005349	UTP20	99	57.138	Pan_troglodytes
ENSDARG00000099280	utp20	99	57.417	ENSPANG00000020388	UTP20	99	57.168	Papio_anubis
ENSDARG00000099280	utp20	99	64.504	ENSPKIG00000007196	utp20	99	64.407	Paramormyrops_kingsleyae
ENSDARG00000099280	utp20	94	57.879	ENSPSIG00000016689	UTP20	99	57.671	Pelodiscus_sinensis
ENSDARG00000099280	utp20	99	64.090	ENSPMGG00000004066	utp20	99	64.197	Periophthalmus_magnuspinnatus
ENSDARG00000099280	utp20	99	57.184	ENSPEMG00000024120	Utp20	99	57.082	Peromyscus_maniculatus_bairdii
ENSDARG00000099280	utp20	99	56.865	ENSPCIG00000009298	UTP20	99	56.173	Phascolarctos_cinereus
ENSDARG00000099280	utp20	92	65.063	ENSPFOG00000003312	utp20	99	64.742	Poecilia_formosa
ENSDARG00000099280	utp20	98	62.796	ENSPLAG00000012874	utp20	100	62.885	Poecilia_latipinna
ENSDARG00000099280	utp20	98	59.012	ENSPMEG00000005915	utp20	100	62.264	Poecilia_mexicana
ENSDARG00000099280	utp20	98	63.666	ENSPREG00000013285	utp20	100	63.435	Poecilia_reticulata
ENSDARG00000099280	utp20	88	57.160	ENSPPYG00000004871	UTP20	100	57.200	Pongo_abelii
ENSDARG00000099280	utp20	81	69.388	ENSPCAG00000012791	UTP20	82	69.388	Procavia_capensis
ENSDARG00000099280	utp20	96	57.355	ENSPCOG00000024948	UTP20	99	57.055	Propithecus_coquereli
ENSDARG00000099280	utp20	99	56.448	ENSPVAG00000008113	UTP20	99	56.014	Pteropus_vampyrus
ENSDARG00000099280	utp20	99	65.876	ENSPNYG00000011561	utp20	99	65.839	Pundamilia_nyererei
ENSDARG00000099280	utp20	99	73.854	ENSPNAG00000006176	utp20	99	74.139	Pygocentrus_nattereri
ENSDARG00000099280	utp20	99	56.458	ENSRNOG00000005823	Utp20	99	56.270	Rattus_norvegicus
ENSDARG00000099280	utp20	99	55.914	ENSRBIG00000025384	UTP20	99	55.237	Rhinopithecus_bieti
ENSDARG00000099280	utp20	99	57.382	ENSRROG00000041254	UTP20	99	57.097	Rhinopithecus_roxellana
ENSDARG00000099280	utp20	99	56.766	ENSSBOG00000035762	UTP20	99	56.266	Saimiri_boliviensis_boliviensis
ENSDARG00000099280	utp20	98	55.134	ENSSHAG00000002298	UTP20	99	54.776	Sarcophilus_harrisii
ENSDARG00000099280	utp20	99	65.978	ENSSFOG00015001674	utp20	99	65.728	Scleropages_formosus
ENSDARG00000099280	utp20	98	63.858	ENSSMAG00000016460	utp20	100	63.469	Scophthalmus_maximus
ENSDARG00000099280	utp20	99	68.081	ENSSDUG00000013730	utp20	99	67.804	Seriola_dumerili
ENSDARG00000099280	utp20	99	68.078	ENSSLDG00000012844	utp20	99	68.174	Seriola_lalandi_dorsalis
ENSDARG00000099280	utp20	62	85.185	ENSSARG00000002796	-	61	68.657	Sorex_araneus
ENSDARG00000099280	utp20	99	56.107	ENSSPUG00000004513	UTP20	99	55.789	Sphenodon_punctatus
ENSDARG00000099280	utp20	99	66.395	ENSSPAG00000014674	utp20	99	66.465	Stegastes_partitus
ENSDARG00000099280	utp20	99	57.255	ENSSSCG00000000869	UTP20	99	57.194	Sus_scrofa
ENSDARG00000099280	utp20	77	56.178	ENSTGUG00000009053	-	100	56.455	Taeniopygia_guttata
ENSDARG00000099280	utp20	99	65.693	ENSTRUG00000005849	utp20	99	65.515	Takifugu_rubripes
ENSDARG00000099280	utp20	99	63.543	ENSTNIG00000006921	utp20	99	63.175	Tetraodon_nigroviridis
ENSDARG00000099280	utp20	91	53.235	ENSTBEG00000011917	UTP20	92	52.963	Tupaia_belangeri
ENSDARG00000099280	utp20	97	56.499	ENSTTRG00000017195	UTP20	98	56.280	Tursiops_truncatus
ENSDARG00000099280	utp20	99	57.072	ENSUAMG00000016363	UTP20	99	56.571	Ursus_americanus
ENSDARG00000099280	utp20	99	56.505	ENSUMAG00000000077	UTP20	99	55.969	Ursus_maritimus
ENSDARG00000099280	utp20	89	57.947	ENSVPAG00000011620	UTP20	92	58.020	Vicugna_pacos
ENSDARG00000099280	utp20	99	57.072	ENSVVUG00000018110	UTP20	99	56.636	Vulpes_vulpes
ENSDARG00000099280	utp20	98	56.445	ENSXETG00000032346	UTP20	100	56.239	Xenopus_tropicalis
ENSDARG00000099280	utp20	98	62.450	ENSXMAG00000006503	utp20	100	62.382	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component