EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000099375 (Gene tree)
Gene ID: 100536140
Gene Symbol: poldip3
Alias: -
Full Name: polymerase (DNA-directed)%2C delta interacting protein 3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 9222 bases
Position: chr3:1209006-1218227
Accession: ZDB-GENE-120201-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130376	RRM_1	PF00076.22	1.6e-09	1	1
ENSDARP00000131621	RRM_1	PF00076.22	1.6e-09	1	1
ENSDARP00000134590	RRM_1	PF00076.22	1.7e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171287	-	1393	-	ENSDARP00000130376	464 (aa)	-	A0A0J9YJ24
ENSDART00000158633	-	1470	XM_009299005	ENSDARP00000134590	490 (aa)	XP_009297280	A0A0R4ILC0
ENSDART00000165769	-	1407	-	ENSDARP00000131621	468 (aa)	-	A0A0R4IDS3

Gene Model

Click here to download ENSDARG00000099375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000099375's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000099375	poldip3	98	42.360	ENSG00000100227	POLDIP3	96	41.026	Homo_sapiens
ENSDARG00000099375	poldip3	99	54.563	ENSAPOG00000021223	poldip3	98	53.479	Acanthochromis_polyacanthus
ENSDARG00000099375	poldip3	98	41.699	ENSAMEG00000009522	POLDIP3	94	40.748	Ailuropoda_melanoleuca
ENSDARG00000099375	poldip3	83	55.872	ENSACIG00000023100	poldip3	75	63.303	Amphilophus_citrinellus
ENSDARG00000099375	poldip3	99	53.571	ENSAOCG00000004142	poldip3	95	53.452	Amphiprion_ocellaris
ENSDARG00000099375	poldip3	99	53.479	ENSAPEG00000013658	poldip3	95	53.057	Amphiprion_percula
ENSDARG00000099375	poldip3	99	52.236	ENSATEG00000009633	poldip3	98	52.130	Anabas_testudineus
ENSDARG00000099375	poldip3	95	45.022	ENSAPLG00000005154	POLDIP3	87	43.764	Anas_platyrhynchos
ENSDARG00000099375	poldip3	98	43.545	ENSACAG00000003515	POLDIP3	95	41.279	Anolis_carolinensis
ENSDARG00000099375	poldip3	79	36.719	ENSANAG00000024431	-	90	36.126	Aotus_nancymaae
ENSDARG00000099375	poldip3	98	42.747	ENSANAG00000033566	-	96	41.026	Aotus_nancymaae
ENSDARG00000099375	poldip3	99	52.789	ENSACLG00000016753	poldip3	81	52.860	Astatotilapia_calliptera
ENSDARG00000099375	poldip3	99	59.350	ENSAMXG00000007939	poldip3	99	59.274	Astyanax_mexicanus
ENSDARG00000099375	poldip3	98	42.278	ENSBTAG00000016511	POLDIP3	96	40.945	Bos_taurus
ENSDARG00000099375	poldip3	98	42.308	ENSCJAG00000009628	POLDIP3	96	40.588	Callithrix_jacchus
ENSDARG00000099375	poldip3	98	43.160	ENSCAFG00000000959	POLDIP3	96	41.420	Canis_familiaris
ENSDARG00000099375	poldip3	98	40.625	ENSCAFG00020000227	POLDIP3	96	39.200	Canis_lupus_dingo
ENSDARG00000099375	poldip3	98	42.278	ENSCHIG00000020171	POLDIP3	96	40.945	Capra_hircus
ENSDARG00000099375	poldip3	98	42.360	ENSTSYG00000007189	POLDIP3	96	41.223	Carlito_syrichta
ENSDARG00000099375	poldip3	95	44.035	ENSCAPG00000006798	POLDIP3	86	42.444	Cavia_aperea
ENSDARG00000099375	poldip3	98	42.969	ENSCPOG00000019524	POLDIP3	96	41.517	Cavia_porcellus
ENSDARG00000099375	poldip3	98	37.945	ENSCCAG00000011395	-	96	36.977	Cebus_capucinus
ENSDARG00000099375	poldip3	98	42.553	ENSCCAG00000027969	-	96	41.026	Cebus_capucinus
ENSDARG00000099375	poldip3	98	42.389	ENSCATG00000029583	POLDIP3	96	41.026	Cercocebus_atys
ENSDARG00000099375	poldip3	98	42.912	ENSCLAG00000016864	POLDIP3	96	40.705	Chinchilla_lanigera
ENSDARG00000099375	poldip3	98	42.197	ENSCSAG00000005654	POLDIP3	96	40.828	Chlorocebus_sabaeus
ENSDARG00000099375	poldip3	98	43.945	ENSCPBG00000021819	POLDIP3	83	43.564	Chrysemys_picta_bellii
ENSDARG00000099375	poldip3	98	42.197	ENSCANG00000027664	POLDIP3	96	41.223	Colobus_angolensis_palliatus
ENSDARG00000099375	poldip3	98	42.278	ENSCGRG00001004211	-	96	40.828	Cricetulus_griseus_chok1gshd
ENSDARG00000099375	poldip3	95	43.750	ENSCGRG00000009374	-	88	41.850	Cricetulus_griseus_crigri
ENSDARG00000099375	poldip3	99	51.600	ENSCSEG00000007165	poldip3	95	51.287	Cynoglossus_semilaevis
ENSDARG00000099375	poldip3	100	51.479	ENSCVAG00000004370	poldip3	100	49.219	Cyprinodon_variegatus
ENSDARG00000099375	poldip3	97	65.753	ENSDNOG00000037211	-	83	60.606	Dasypus_novemcinctus
ENSDARG00000099375	poldip3	98	42.994	ENSDORG00000006590	Poldip3	96	41.569	Dipodomys_ordii
ENSDARG00000099375	poldip3	98	38.566	ENSETEG00000018022	POLDIP3	90	38.298	Echinops_telfairi
ENSDARG00000099375	poldip3	98	42.582	ENSEASG00005000795	POLDIP3	96	40.237	Equus_asinus_asinus
ENSDARG00000099375	poldip3	98	42.582	ENSECAG00000018350	POLDIP3	96	40.237	Equus_caballus
ENSDARG00000099375	poldip3	74	84.043	ENSEEUG00000001290	POLDIP3	67	84.043	Erinaceus_europaeus
ENSDARG00000099375	poldip3	99	52.632	ENSELUG00000009005	poldip3	86	53.924	Esox_lucius
ENSDARG00000099375	poldip3	98	43.462	ENSFCAG00000032029	POLDIP3	96	41.535	Felis_catus
ENSDARG00000099375	poldip3	98	44.118	ENSFALG00000011621	POLDIP3	82	42.744	Ficedula_albicollis
ENSDARG00000099375	poldip3	98	42.857	ENSFDAG00000019550	POLDIP3	96	40.237	Fukomys_damarensis
ENSDARG00000099375	poldip3	99	52.906	ENSFHEG00000006083	poldip3	99	50.203	Fundulus_heteroclitus
ENSDARG00000099375	poldip3	99	47.433	ENSGMOG00000006232	poldip3	94	47.154	Gadus_morhua
ENSDARG00000099375	poldip3	98	44.618	ENSGALG00000011863	POLDIP3	96	43.504	Gallus_gallus
ENSDARG00000099375	poldip3	99	49.219	ENSGAFG00000017465	poldip3	99	47.368	Gambusia_affinis
ENSDARG00000099375	poldip3	99	50.605	ENSGACG00000007224	poldip3	95	47.969	Gasterosteus_aculeatus
ENSDARG00000099375	poldip3	98	44.639	ENSGAGG00000014629	POLDIP3	92	43.762	Gopherus_agassizii
ENSDARG00000099375	poldip3	98	42.664	ENSGGOG00000014961	POLDIP3	96	41.142	Gorilla_gorilla
ENSDARG00000099375	poldip3	99	52.988	ENSHBUG00000021806	poldip3	78	52.756	Haplochromis_burtoni
ENSDARG00000099375	poldip3	98	43.050	ENSHGLG00000013156	POLDIP3	96	40.828	Heterocephalus_glaber_female
ENSDARG00000099375	poldip3	98	43.050	ENSHGLG00100009086	POLDIP3	96	40.828	Heterocephalus_glaber_male
ENSDARG00000099375	poldip3	99	48.718	ENSHCOG00000005823	poldip3	93	50.395	Hippocampus_comes
ENSDARG00000099375	poldip3	99	57.231	ENSIPUG00000000564	poldip3	90	56.513	Ictalurus_punctatus
ENSDARG00000099375	poldip3	95	43.534	ENSSTOG00000008230	POLDIP3	88	41.630	Ictidomys_tridecemlineatus
ENSDARG00000099375	poldip3	98	41.779	ENSJJAG00000018034	Poldip3	96	40.828	Jaculus_jaculus
ENSDARG00000099375	poldip3	99	52.762	ENSKMAG00000013839	poldip3	95	52.549	Kryptolebias_marmoratus
ENSDARG00000099375	poldip3	98	43.133	ENSLAFG00000014901	POLDIP3	94	41.617	Loxodonta_africana
ENSDARG00000099375	poldip3	98	42.389	ENSMFAG00000044670	POLDIP3	96	40.828	Macaca_fascicularis
ENSDARG00000099375	poldip3	98	42.389	ENSMMUG00000047046	POLDIP3	96	40.828	Macaca_mulatta
ENSDARG00000099375	poldip3	98	42.389	ENSMNEG00000037068	POLDIP3	96	40.828	Macaca_nemestrina
ENSDARG00000099375	poldip3	76	76.000	ENSMAMG00000009151	poldip3	93	78.723	Mastacembelus_armatus
ENSDARG00000099375	poldip3	99	52.988	ENSMZEG00005005201	poldip3	95	52.756	Maylandia_zebra
ENSDARG00000099375	poldip3	95	45.295	ENSMGAG00000011986	POLDIP3	87	44.273	Meleagris_gallopavo
ENSDARG00000099375	poldip3	95	39.655	ENSMAUG00000014002	Poldip3	84	37.885	Mesocricetus_auratus
ENSDARG00000099375	poldip3	98	42.500	ENSMICG00000041767	POLDIP3	96	41.026	Microcebus_murinus
ENSDARG00000099375	poldip3	98	42.085	ENSMOCG00000014101	Poldip3	96	40.434	Microtus_ochrogaster
ENSDARG00000099375	poldip3	75	80.142	ENSMMOG00000004982	poldip3	94	80.142	Mola_mola
ENSDARG00000099375	poldip3	99	44.330	ENSMODG00000006932	-	50	44.396	Monodelphis_domestica
ENSDARG00000099375	poldip3	98	42.085	MGP_CAROLIEiJ_G0020093	Poldip3	96	40.945	Mus_caroli
ENSDARG00000099375	poldip3	98	41.892	ENSMUSG00000041815	Poldip3	96	40.945	Mus_musculus
ENSDARG00000099375	poldip3	98	42.857	MGP_PahariEiJ_G0020100	Poldip3	96	41.339	Mus_pahari
ENSDARG00000099375	poldip3	98	42.278	MGP_SPRETEiJ_G0020991	Poldip3	96	41.142	Mus_spretus
ENSDARG00000099375	poldip3	98	43.846	ENSMPUG00000016314	POLDIP3	96	41.929	Mustela_putorius_furo
ENSDARG00000099375	poldip3	99	44.172	ENSMLUG00000012408	POLDIP3	84	43.833	Myotis_lucifugus
ENSDARG00000099375	poldip3	98	42.442	ENSNGAG00000000210	Poldip3	96	40.631	Nannospalax_galili
ENSDARG00000099375	poldip3	99	53.892	ENSNBRG00000001837	poldip3	97	52.381	Neolamprologus_brichardi
ENSDARG00000099375	poldip3	98	41.961	ENSNLEG00000015950	POLDIP3	96	40.267	Nomascus_leucogenys
ENSDARG00000099375	poldip3	98	44.487	ENSMEUG00000013932	POLDIP3	96	42.857	Notamacropus_eugenii
ENSDARG00000099375	poldip3	98	41.459	ENSODEG00000014224	POLDIP3	96	39.412	Octodon_degus
ENSDARG00000099375	poldip3	99	52.988	ENSONIG00000008367	poldip3	95	52.953	Oreochromis_niloticus
ENSDARG00000099375	poldip3	99	44.099	ENSOANG00000011029	POLDIP3	85	43.478	Ornithorhynchus_anatinus
ENSDARG00000099375	poldip3	98	42.176	ENSOCUG00000016133	POLDIP3	95	41.879	Oryctolagus_cuniculus
ENSDARG00000099375	poldip3	99	52.695	ENSORLG00000014799	poldip3	95	53.755	Oryzias_latipes
ENSDARG00000099375	poldip3	99	52.495	ENSORLG00020006113	poldip3	95	53.137	Oryzias_latipes_hni
ENSDARG00000099375	poldip3	99	52.200	ENSORLG00015018234	poldip3	95	52.871	Oryzias_latipes_hsok
ENSDARG00000099375	poldip3	99	53.908	ENSOMEG00000007071	poldip3	95	53.267	Oryzias_melastigma
ENSDARG00000099375	poldip3	98	42.197	ENSOGAG00000008216	POLDIP3	96	41.223	Otolemur_garnettii
ENSDARG00000099375	poldip3	98	42.471	ENSOARG00000018993	POLDIP3	96	41.339	Ovis_aries
ENSDARG00000099375	poldip3	98	42.471	ENSPPAG00000036619	POLDIP3	96	40.945	Pan_paniscus
ENSDARG00000099375	poldip3	98	43.269	ENSPPRG00000021188	POLDIP3	96	41.339	Panthera_pardus
ENSDARG00000099375	poldip3	98	43.269	ENSPTIG00000021396	POLDIP3	96	41.339	Panthera_tigris_altaica
ENSDARG00000099375	poldip3	98	42.471	ENSPTRG00000014460	POLDIP3	96	40.945	Pan_troglodytes
ENSDARG00000099375	poldip3	98	42.389	ENSPANG00000007026	POLDIP3	96	41.026	Papio_anubis
ENSDARG00000099375	poldip3	97	51.272	ENSPKIG00000007231	poldip3	89	50.977	Paramormyrops_kingsleyae
ENSDARG00000099375	poldip3	99	52.653	ENSPKIG00000002188	poldip3	89	53.036	Paramormyrops_kingsleyae
ENSDARG00000099375	poldip3	95	47.186	ENSPSIG00000006347	POLDIP3	87	46.187	Pelodiscus_sinensis
ENSDARG00000099375	poldip3	98	42.085	ENSPEMG00000021065	Poldip3	96	40.748	Peromyscus_maniculatus_bairdii
ENSDARG00000099375	poldip3	98	44.316	ENSPCIG00000026194	POLDIP3	96	41.221	Phascolarctos_cinereus
ENSDARG00000099375	poldip3	99	51.341	ENSPFOG00000000926	poldip3	94	61.710	Poecilia_formosa
ENSDARG00000099375	poldip3	99	50.664	ENSPLAG00000005558	poldip3	95	51.462	Poecilia_latipinna
ENSDARG00000099375	poldip3	99	52.490	ENSPMEG00000018286	poldip3	95	52.953	Poecilia_mexicana
ENSDARG00000099375	poldip3	99	49.811	ENSPREG00000016505	poldip3	96	51.451	Poecilia_reticulata
ENSDARG00000099375	poldip3	98	42.553	ENSPPYG00000011899	POLDIP3	96	41.223	Pongo_abelii
ENSDARG00000099375	poldip3	98	43.050	ENSPCAG00000009424	POLDIP3	96	40.828	Procavia_capensis
ENSDARG00000099375	poldip3	98	42.802	ENSPCOG00000020271	POLDIP3	96	41.535	Propithecus_coquereli
ENSDARG00000099375	poldip3	98	42.582	ENSPVAG00000014131	POLDIP3	96	41.223	Pteropus_vampyrus
ENSDARG00000099375	poldip3	99	52.894	ENSPNYG00000020333	poldip3	95	52.860	Pundamilia_nyererei
ENSDARG00000099375	poldip3	99	60.041	ENSPNAG00000023036	poldip3	95	59.369	Pygocentrus_nattereri
ENSDARG00000099375	poldip3	98	42.085	ENSRNOG00000022877	Poldip3	96	40.945	Rattus_norvegicus
ENSDARG00000099375	poldip3	98	42.582	ENSRBIG00000041676	POLDIP3	96	41.223	Rhinopithecus_bieti
ENSDARG00000099375	poldip3	98	42.582	ENSRROG00000022379	POLDIP3	96	41.223	Rhinopithecus_roxellana
ENSDARG00000099375	poldip3	98	42.747	ENSSBOG00000021779	-	96	41.026	Saimiri_boliviensis_boliviensis
ENSDARG00000099375	poldip3	98	38.922	ENSSBOG00000025315	-	95	37.143	Saimiri_boliviensis_boliviensis
ENSDARG00000099375	poldip3	98	45.648	ENSSHAG00000005316	POLDIP3	94	43.444	Sarcophilus_harrisii
ENSDARG00000099375	poldip3	99	54.545	ENSSFOG00015012429	-	97	54.455	Scleropages_formosus
ENSDARG00000099375	poldip3	99	48.155	ENSSFOG00015012582	poldip3	96	47.969	Scleropages_formosus
ENSDARG00000099375	poldip3	99	50.791	ENSSMAG00000004609	poldip3	93	56.911	Scophthalmus_maximus
ENSDARG00000099375	poldip3	99	51.874	ENSSDUG00000016881	poldip3	95	51.838	Seriola_dumerili
ENSDARG00000099375	poldip3	99	51.282	ENSSLDG00000024763	poldip3	95	51.538	Seriola_lalandi_dorsalis
ENSDARG00000099375	poldip3	99	40.574	ENSSARG00000011587	POLDIP3	83	40.397	Sorex_araneus
ENSDARG00000099375	poldip3	98	44.163	ENSSPUG00000005362	POLDIP3	92	43.053	Sphenodon_punctatus
ENSDARG00000099375	poldip3	98	42.885	ENSSSCG00000000039	POLDIP3	96	41.535	Sus_scrofa
ENSDARG00000099375	poldip3	98	44.336	ENSTGUG00000009622	-	94	43.762	Taeniopygia_guttata
ENSDARG00000099375	poldip3	99	53.131	ENSTRUG00000006604	poldip3	95	52.590	Takifugu_rubripes
ENSDARG00000099375	poldip3	99	48.875	ENSTNIG00000010841	poldip3	95	46.654	Tetraodon_nigroviridis
ENSDARG00000099375	poldip3	98	42.360	ENSTBEG00000010978	POLDIP3	96	41.420	Tupaia_belangeri
ENSDARG00000099375	poldip3	95	44.206	ENSTTRG00000015129	POLDIP3	88	42.070	Tursiops_truncatus
ENSDARG00000099375	poldip3	98	41.892	ENSUAMG00000026181	POLDIP3	96	40.945	Ursus_americanus
ENSDARG00000099375	poldip3	95	43.750	ENSUMAG00000020385	POLDIP3	84	42.291	Ursus_maritimus
ENSDARG00000099375	poldip3	98	42.775	ENSVVUG00000002231	POLDIP3	96	41.026	Vulpes_vulpes
ENSDARG00000099375	poldip3	99	43.636	ENSXETG00000013412	poldip3	96	42.664	Xenopus_tropicalis
ENSDARG00000099375	poldip3	99	43.361	ENSXCOG00000015952	poldip3	95	43.685	Xiphophorus_couchianus
ENSDARG00000099375	poldip3	99	50.099	ENSXMAG00000006152	poldip3	95	51.267	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0006406	mRNA export from nucleus	-	IEA	Process