EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000099593 (Gene tree)
Gene ID: 798778
Gene Symbol: r3hcc1
Alias: si:dkey-191l12.1
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10079 bases
Position: chr10:20392083-20402161
Accession: ZDB-GENE-091204-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000139628	R3H	PF01424.22	1e-09	1	1
ENSDARP00000137545	R3H	PF01424.22	1.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000160803	-	2286	XM_001339175	ENSDARP00000139628	385 (aa)	XP_001339211	A0A0R4IWG5
ENSDART00000166867	-	2082	-	ENSDARP00000137545	404 (aa)	-	A0A0R4IN15

Gene Model

Click here to download ENSDARG00000099593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000099593's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000099593	r3hcc1	98	33.099	ENSG00000104679	R3HCC1	100	44.186	Homo_sapiens
ENSDARG00000099593	r3hcc1	98	42.718	ENSAPOG00000003616	r3hcc1	92	43.447	Acanthochromis_polyacanthus
ENSDARG00000099593	r3hcc1	98	34.279	ENSAMEG00000002963	R3HCC1	90	32.715	Ailuropoda_melanoleuca
ENSDARG00000099593	r3hcc1	99	31.000	ENSACIG00000017144	r3hcc1	99	33.482	Amphilophus_citrinellus
ENSDARG00000099593	r3hcc1	96	42.365	ENSAOCG00000003945	r3hcc1	99	42.857	Amphiprion_ocellaris
ENSDARG00000099593	r3hcc1	96	42.365	ENSAPEG00000003613	r3hcc1	99	42.857	Amphiprion_percula
ENSDARG00000099593	r3hcc1	91	42.931	ENSATEG00000023860	r3hcc1	98	44.192	Anabas_testudineus
ENSDARG00000099593	r3hcc1	98	31.767	ENSACAG00000016627	R3HCC1	95	32.662	Anolis_carolinensis
ENSDARG00000099593	r3hcc1	98	33.487	ENSANAG00000036169	R3HCC1	96	33.415	Aotus_nancymaae
ENSDARG00000099593	r3hcc1	98	33.023	ENSBTAG00000025830	R3HCC1	93	33.100	Bos_taurus
ENSDARG00000099593	r3hcc1	98	33.256	ENSCJAG00000020118	R3HCC1	96	33.170	Callithrix_jacchus
ENSDARG00000099593	r3hcc1	97	33.967	ENSCAFG00000009210	R3HCC1	92	34.906	Canis_familiaris
ENSDARG00000099593	r3hcc1	84	32.181	ENSCAFG00020012870	R3HCC1	89	32.808	Canis_lupus_dingo
ENSDARG00000099593	r3hcc1	98	32.949	ENSCHIG00000009107	R3HCC1	96	32.719	Capra_hircus
ENSDARG00000099593	r3hcc1	98	34.038	ENSTSYG00000000511	R3HCC1	75	33.953	Carlito_syrichta
ENSDARG00000099593	r3hcc1	62	40.559	ENSCAPG00000015813	R3HCC1	57	40.559	Cavia_aperea
ENSDARG00000099593	r3hcc1	73	46.154	ENSCPOG00000009696	R3HCC1	62	46.154	Cavia_porcellus
ENSDARG00000099593	r3hcc1	61	48.864	ENSCATG00000032971	R3HCC1	96	34.158	Cercocebus_atys
ENSDARG00000099593	r3hcc1	98	35.308	ENSCLAG00000015556	R3HCC1	81	35.392	Chinchilla_lanigera
ENSDARG00000099593	r3hcc1	98	34.499	ENSCHOG00000000396	R3HCC1	93	34.579	Choloepus_hoffmanni
ENSDARG00000099593	r3hcc1	98	33.333	ENSCANG00000029441	R3HCC1	96	33.582	Colobus_angolensis_palliatus
ENSDARG00000099593	r3hcc1	94	40.411	ENSCGRG00001014977	R3hcc1	97	31.828	Cricetulus_griseus_chok1gshd
ENSDARG00000099593	r3hcc1	94	40.411	ENSCGRG00000004454	R3hcc1	97	31.828	Cricetulus_griseus_crigri
ENSDARG00000099593	r3hcc1	96	43.842	ENSCSEG00000005748	r3hcc1	98	43.842	Cynoglossus_semilaevis
ENSDARG00000099593	r3hcc1	83	36.842	ENSCVAG00000002640	r3hcc1	96	36.842	Cyprinodon_variegatus
ENSDARG00000099593	r3hcc1	98	35.446	ENSDNOG00000007168	R3HCC1	89	35.514	Dasypus_novemcinctus
ENSDARG00000099593	r3hcc1	73	46.897	ENSDORG00000026365	R3hcc1	97	31.749	Dipodomys_ordii
ENSDARG00000099593	r3hcc1	98	30.211	ENSETEG00000001147	R3HCC1	94	30.679	Echinops_telfairi
ENSDARG00000099593	r3hcc1	98	34.118	ENSEASG00005018782	R3HCC1	78	34.353	Equus_asinus_asinus
ENSDARG00000099593	r3hcc1	73	42.759	ENSECAG00000025013	R3HCC1	96	33.333	Equus_caballus
ENSDARG00000099593	r3hcc1	97	33.413	ENSEEUG00000011918	R3HCC1	92	33.652	Erinaceus_europaeus
ENSDARG00000099593	r3hcc1	94	44.686	ENSELUG00000023650	r3hcc1	98	45.721	Esox_lucius
ENSDARG00000099593	r3hcc1	98	35.162	ENSFCAG00000012395	R3HCC1	93	34.824	Felis_catus
ENSDARG00000099593	r3hcc1	74	37.415	ENSFALG00000001646	R3HCC1	55	36.774	Ficedula_albicollis
ENSDARG00000099593	r3hcc1	73	44.056	ENSFDAG00000001572	R3HCC1	97	32.877	Fukomys_damarensis
ENSDARG00000099593	r3hcc1	96	34.853	ENSGMOG00000017590	-	99	34.667	Gadus_morhua
ENSDARG00000099593	r3hcc1	99	43.062	ENSGAFG00000008747	-	92	42.670	Gambusia_affinis
ENSDARG00000099593	r3hcc1	98	42.344	ENSGACG00000008447	r3hcc1	95	42.344	Gasterosteus_aculeatus
ENSDARG00000099593	r3hcc1	98	33.420	ENSGGOG00000013817	R3HCC1	97	33.254	Gorilla_gorilla
ENSDARG00000099593	r3hcc1	62	59.355	ENSHBUG00000022250	-	99	42.782	Haplochromis_burtoni
ENSDARG00000099593	r3hcc1	76	43.506	ENSHGLG00000010517	R3HCC1	91	31.891	Heterocephalus_glaber_female
ENSDARG00000099593	r3hcc1	76	43.506	ENSHGLG00100006388	R3HCC1	91	31.891	Heterocephalus_glaber_male
ENSDARG00000099593	r3hcc1	98	44.619	ENSHCOG00000011745	r3hcc1	93	44.301	Hippocampus_comes
ENSDARG00000099593	r3hcc1	98	49.610	ENSIPUG00000024504	r3hcc1	86	50.000	Ictalurus_punctatus
ENSDARG00000099593	r3hcc1	77	50.345	ENSSTOG00000027130	R3HCC1	65	50.345	Ictidomys_tridecemlineatus
ENSDARG00000099593	r3hcc1	75	45.517	ENSJJAG00000013075	R3hcc1	65	45.517	Jaculus_jaculus
ENSDARG00000099593	r3hcc1	93	43.702	ENSKMAG00000000286	r3hcc1	99	43.959	Kryptolebias_marmoratus
ENSDARG00000099593	r3hcc1	84	44.311	ENSLACG00000011894	R3HCC1	74	44.311	Latimeria_chalumnae
ENSDARG00000099593	r3hcc1	97	45.261	ENSLOCG00000015442	r3hcc1	100	43.038	Lepisosteus_oculatus
ENSDARG00000099593	r3hcc1	72	45.139	ENSLAFG00000016137	R3HCC1	57	45.139	Loxodonta_africana
ENSDARG00000099593	r3hcc1	61	48.864	ENSMFAG00000032894	R3HCC1	96	33.663	Macaca_fascicularis
ENSDARG00000099593	r3hcc1	98	33.411	ENSMMUG00000016655	R3HCC1	96	33.902	Macaca_mulatta
ENSDARG00000099593	r3hcc1	98	33.663	ENSMNEG00000043283	R3HCC1	96	33.911	Macaca_nemestrina
ENSDARG00000099593	r3hcc1	61	48.864	ENSMLEG00000030147	R3HCC1	96	34.422	Mandrillus_leucophaeus
ENSDARG00000099593	r3hcc1	93	42.079	ENSMAMG00000018146	r3hcc1	99	43.317	Mastacembelus_armatus
ENSDARG00000099593	r3hcc1	97	34.709	ENSMGAG00000001356	R3HCC1	90	33.571	Meleagris_gallopavo
ENSDARG00000099593	r3hcc1	84	43.972	ENSMAUG00000016096	R3hcc1	97	32.314	Mesocricetus_auratus
ENSDARG00000099593	r3hcc1	61	48.864	ENSMICG00000011146	R3HCC1	93	31.579	Microcebus_murinus
ENSDARG00000099593	r3hcc1	94	44.828	ENSMOCG00000018508	R3hcc1	97	31.423	Microtus_ochrogaster
ENSDARG00000099593	r3hcc1	71	31.333	ENSMODG00000016809	-	71	32.000	Monodelphis_domestica
ENSDARG00000099593	r3hcc1	93	41.730	ENSMALG00000000731	r3hcc1	99	41.944	Monopterus_albus
ENSDARG00000099593	r3hcc1	75	43.448	MGP_CAROLIEiJ_G0019467	R3hcc1	71	38.710	Mus_caroli
ENSDARG00000099593	r3hcc1	74	43.448	ENSMUSG00000034194	R3hcc1	60	43.448	Mus_musculus
ENSDARG00000099593	r3hcc1	90	39.726	MGP_PahariEiJ_G0030484	R3hcc1	60	43.448	Mus_pahari
ENSDARG00000099593	r3hcc1	74	43.448	MGP_SPRETEiJ_G0020359	R3hcc1	60	43.448	Mus_spretus
ENSDARG00000099593	r3hcc1	98	34.515	ENSMPUG00000003457	R3HCC1	84	34.752	Mustela_putorius_furo
ENSDARG00000099593	r3hcc1	98	35.514	ENSMLUG00000000266	R3HCC1	89	35.581	Myotis_lucifugus
ENSDARG00000099593	r3hcc1	75	44.828	ENSNGAG00000016747	R3hcc1	97	33.333	Nannospalax_galili
ENSDARG00000099593	r3hcc1	84	64.706	ENSNBRG00000016975	-	82	64.706	Neolamprologus_brichardi
ENSDARG00000099593	r3hcc1	90	31.931	ENSNLEG00000015944	R3HCC1	86	32.029	Nomascus_leucogenys
ENSDARG00000099593	r3hcc1	98	35.697	ENSMEUG00000010587	R3HCC1	96	35.476	Notamacropus_eugenii
ENSDARG00000099593	r3hcc1	74	44.138	ENSODEG00000007529	R3HCC1	62	44.138	Octodon_degus
ENSDARG00000099593	r3hcc1	98	35.154	ENSOANG00000013877	R3HCC1	94	36.854	Ornithorhynchus_anatinus
ENSDARG00000099593	r3hcc1	98	34.217	ENSOCUG00000023554	R3HCC1	83	35.561	Oryctolagus_cuniculus
ENSDARG00000099593	r3hcc1	92	39.895	ENSORLG00000016816	r3hcc1	98	39.895	Oryzias_latipes
ENSDARG00000099593	r3hcc1	92	40.209	ENSORLG00020012005	r3hcc1	98	40.209	Oryzias_latipes_hni
ENSDARG00000099593	r3hcc1	92	38.579	ENSORLG00015007018	r3hcc1	98	39.687	Oryzias_latipes_hsok
ENSDARG00000099593	r3hcc1	92	40.209	ENSOMEG00000000816	r3hcc1	98	39.844	Oryzias_melastigma
ENSDARG00000099593	r3hcc1	98	32.176	ENSOARG00000010146	R3HCC1	94	32.867	Ovis_aries
ENSDARG00000099593	r3hcc1	98	34.507	ENSPPRG00000002522	R3HCC1	97	34.824	Panthera_pardus
ENSDARG00000099593	r3hcc1	88	34.190	ENSPTIG00000011230	R3HCC1	92	34.536	Panthera_tigris_altaica
ENSDARG00000099593	r3hcc1	61	48.864	ENSPANG00000000453	R3HCC1	96	33.911	Papio_anubis
ENSDARG00000099593	r3hcc1	89	42.936	ENSPKIG00000014426	-	96	41.257	Paramormyrops_kingsleyae
ENSDARG00000099593	r3hcc1	89	43.351	ENSPKIG00000020397	-	95	43.351	Paramormyrops_kingsleyae
ENSDARG00000099593	r3hcc1	98	36.768	ENSPSIG00000017664	R3HCC1	96	37.237	Pelodiscus_sinensis
ENSDARG00000099593	r3hcc1	78	43.590	ENSPEMG00000007118	R3hcc1	97	31.974	Peromyscus_maniculatus_bairdii
ENSDARG00000099593	r3hcc1	98	41.805	ENSPFOG00000022301	r3hcc1	91	41.805	Poecilia_formosa
ENSDARG00000099593	r3hcc1	98	41.827	ENSPLAG00000010794	r3hcc1	91	41.827	Poecilia_latipinna
ENSDARG00000099593	r3hcc1	98	41.805	ENSPMEG00000022515	r3hcc1	91	41.805	Poecilia_mexicana
ENSDARG00000099593	r3hcc1	99	41.608	ENSPREG00000000713	r3hcc1	91	41.608	Poecilia_reticulata
ENSDARG00000099593	r3hcc1	72	44.681	ENSPCAG00000012229	R3HCC1	63	44.681	Procavia_capensis
ENSDARG00000099593	r3hcc1	61	48.864	ENSPCOG00000027554	R3HCC1	97	33.255	Propithecus_coquereli
ENSDARG00000099593	r3hcc1	98	34.813	ENSPVAG00000009829	R3HCC1	95	34.096	Pteropus_vampyrus
ENSDARG00000099593	r3hcc1	95	50.000	ENSPNAG00000023875	r3hcc1	99	51.058	Pygocentrus_nattereri
ENSDARG00000099593	r3hcc1	75	44.138	ENSRNOG00000016777	AABR07018321.1	80	30.818	Rattus_norvegicus
ENSDARG00000099593	r3hcc1	61	48.864	ENSRBIG00000028045	R3HCC1	97	33.565	Rhinopithecus_bieti
ENSDARG00000099593	r3hcc1	61	48.864	ENSRROG00000031126	R3HCC1	96	33.911	Rhinopithecus_roxellana
ENSDARG00000099593	r3hcc1	98	33.718	ENSSBOG00000022590	R3HCC1	97	34.028	Saimiri_boliviensis_boliviensis
ENSDARG00000099593	r3hcc1	99	40.102	ENSSFOG00015013507	r3hcc1	98	46.579	Scleropages_formosus
ENSDARG00000099593	r3hcc1	93	41.728	ENSSMAG00000008647	r3hcc1	99	41.728	Scophthalmus_maximus
ENSDARG00000099593	r3hcc1	99	43.256	ENSSDUG00000022786	r3hcc1	98	44.028	Seriola_dumerili
ENSDARG00000099593	r3hcc1	99	42.791	ENSSLDG00000019031	r3hcc1	98	43.560	Seriola_lalandi_dorsalis
ENSDARG00000099593	r3hcc1	96	40.741	ENSSPAG00000013497	r3hcc1	99	40.741	Stegastes_partitus
ENSDARG00000099593	r3hcc1	98	30.189	ENSSSCG00000037347	-	87	30.425	Sus_scrofa
ENSDARG00000099593	r3hcc1	96	40.464	ENSTRUG00000015880	r3hcc1	99	39.098	Takifugu_rubripes
ENSDARG00000099593	r3hcc1	72	39.583	ENSTTRG00000012247	R3HCC1	92	31.148	Tursiops_truncatus
ENSDARG00000099593	r3hcc1	98	34.515	ENSUAMG00000007344	R3HCC1	96	34.353	Ursus_americanus
ENSDARG00000099593	r3hcc1	98	34.198	ENSVVUG00000005056	R3HCC1	92	35.697	Vulpes_vulpes
ENSDARG00000099593	r3hcc1	94	38.903	ENSXCOG00000017626	r3hcc1	89	39.651	Xiphophorus_couchianus
ENSDARG00000099593	r3hcc1	99	41.981	ENSXMAG00000018375	r3hcc1	92	42.268	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0035145	exon-exon junction complex	21873635.	IBA	Component