EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000099966 (Gene tree)
Gene ID: 553347
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13231 bases
Position: chr12:22560067-22573297
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135038	RNA_pol_Rpb1_5	PF04998.17	4.8e-101	1	1
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	1	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	2	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	3	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	4	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	5	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	6	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	7	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	8	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	9	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	10	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	11	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	12	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	13	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	14	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	15	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	16	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	17	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	18	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	19	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	20	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	21	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	22	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	23	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	24	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	25	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	26	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	27	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	28	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	29	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	30	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	31	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	32	33
ENSDARP00000135038	RNA_pol_Rpb1_R	PF05001.13	3.9e-22	33	33
ENSDARP00000135038	RNA_pol_Rpb1_4	PF05000.17	1.8e-37	1	1
ENSDARP00000135038	RNA_pol_Rpb1_2	PF00623.20	1.2e-74	1	1
ENSDARP00000135038	RNA_pol_Rpb1_3	PF04983.18	1e-49	1	1
ENSDARP00000135038	RNA_pol_Rpb1_1	PF04997.12	5.4e-108	1	1
ENSDARP00000135038	RNA_pol_Rpb1_7	PF04990.12	1.4e-54	1	1
ENSDARP00000135038	RNA_pol_Rpb1_6	PF04992.14	1e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000172066	-	8182	XM_005156225	ENSDARP00000135038	1965 (aa)	XP_005156282	A0A0R4IMS9

Gene Model

Click here to download ENSDARG00000099966's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000099966's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000099966	polr2a	66	38.284	ENSDARG00000102569	polr3a	91	38.284
ENSDARG00000099966	polr2a	53	44.231	ENSDARG00000098375	polr1a	76	44.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000099966	polr2a	82	97.024	ENSAPOG00000006552	polr2a	91	97.024	Acanthochromis_polyacanthus
ENSDARG00000099966	polr2a	82	94.118	ENSAMEG00000016265	-	82	94.125	Ailuropoda_melanoleuca
ENSDARG00000099966	polr2a	100	94.814	ENSACIG00000015982	polr2a	100	95.323	Amphilophus_citrinellus
ENSDARG00000099966	polr2a	90	94.916	ENSAOCG00000004255	polr2a	93	94.916	Amphiprion_ocellaris
ENSDARG00000099966	polr2a	100	97.712	ENSAPEG00000012623	polr2a	100	97.712	Amphiprion_percula
ENSDARG00000099966	polr2a	100	97.356	ENSATEG00000019644	polr2a	100	97.356	Anabas_testudineus
ENSDARG00000099966	polr2a	82	94.538	ENSACAG00000014561	POLR2A	82	94.544	Anolis_carolinensis
ENSDARG00000099966	polr2a	82	94.479	ENSANAG00000020093	-	82	94.486	Aotus_nancymaae
ENSDARG00000099966	polr2a	100	97.153	ENSACLG00000006735	polr2a	100	97.153	Astatotilapia_calliptera
ENSDARG00000099966	polr2a	100	97.966	ENSAMXG00000020046	polr2a	100	97.966	Astyanax_mexicanus
ENSDARG00000099966	polr2a	82	94.479	ENSBTAG00000046765	POLR2A	82	94.486	Bos_taurus
ENSDARG00000099966	polr2a	98	71.429	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSDARG00000099966	polr2a	85	94.417	ENSCAFG00000016532	POLR2A	99	94.424	Canis_familiaris
ENSDARG00000099966	polr2a	82	93.614	ENSCAFG00020007929	-	82	93.622	Canis_lupus_dingo
ENSDARG00000099966	polr2a	82	94.479	ENSCHIG00000027173	-	82	94.486	Capra_hircus
ENSDARG00000099966	polr2a	90	93.992	ENSTSYG00000012803	-	85	91.889	Carlito_syrichta
ENSDARG00000099966	polr2a	99	86.730	ENSCAPG00000001882	-	100	93.742	Cavia_aperea
ENSDARG00000099966	polr2a	99	88.470	ENSCPOG00000014812	-	100	93.325	Cavia_porcellus
ENSDARG00000099966	polr2a	82	94.479	ENSCCAG00000020938	-	82	94.486	Cebus_capucinus
ENSDARG00000099966	polr2a	82	94.479	ENSCATG00000013680	-	82	94.486	Cercocebus_atys
ENSDARG00000099966	polr2a	93	90.532	ENSCLAG00000012196	-	82	94.362	Chinchilla_lanigera
ENSDARG00000099966	polr2a	82	85.820	ENSCSAG00000011644	-	82	85.837	Chlorocebus_sabaeus
ENSDARG00000099966	polr2a	89	90.813	ENSCPBG00000012697	POLR2A	94	90.592	Chrysemys_picta_bellii
ENSDARG00000099966	polr2a	98	76.364	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSDARG00000099966	polr2a	82	93.797	ENSCANG00000010622	-	82	93.804	Colobus_angolensis_palliatus
ENSDARG00000099966	polr2a	93	87.399	ENSCGRG00001003538	Polr2a	85	87.049	Cricetulus_griseus_chok1gshd
ENSDARG00000099966	polr2a	82	90.736	ENSCGRG00000012105	Polr2a	93	90.748	Cricetulus_griseus_crigri
ENSDARG00000099966	polr2a	99	96.694	ENSCSEG00000002635	polr2a	100	96.694	Cynoglossus_semilaevis
ENSDARG00000099966	polr2a	100	97.458	ENSCVAG00000005156	polr2a	100	97.458	Cyprinodon_variegatus
ENSDARG00000099966	polr2a	82	91.439	ENSDNOG00000016482	-	82	91.450	Dasypus_novemcinctus
ENSDARG00000099966	polr2a	82	94.479	ENSDORG00000008667	Polr2a	82	94.486	Dipodomys_ordii
ENSDARG00000099966	polr2a	99	70.728	FBgn0003277	RpII215	98	75.513	Drosophila_melanogaster
ENSDARG00000099966	polr2a	94	90.008	ENSETEG00000002540	-	87	91.104	Echinops_telfairi
ENSDARG00000099966	polr2a	81	86.650	ENSEBUG00000013967	polr2a	82	86.584	Eptatretus_burgeri
ENSDARG00000099966	polr2a	91	89.950	ENSEASG00005019114	-	83	92.565	Equus_asinus_asinus
ENSDARG00000099966	polr2a	82	94.479	ENSECAG00000018485	POLR2A	82	94.486	Equus_caballus
ENSDARG00000099966	polr2a	83	94.393	ENSEEUG00000001154	-	95	94.393	Erinaceus_europaeus
ENSDARG00000099966	polr2a	89	92.237	ENSELUG00000014284	polr2a	84	92.914	Esox_lucius
ENSDARG00000099966	polr2a	82	94.417	ENSFDAG00000008287	-	82	94.424	Fukomys_damarensis
ENSDARG00000099966	polr2a	99	97.183	ENSFHEG00000001768	polr2a	100	97.183	Fundulus_heteroclitus
ENSDARG00000099966	polr2a	99	93.008	ENSGMOG00000007725	polr2a	100	93.008	Gadus_morhua
ENSDARG00000099966	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	92.457	Gambusia_affinis
ENSDARG00000099966	polr2a	99	93.205	ENSGACG00000019366	polr2a	100	92.676	Gasterosteus_aculeatus
ENSDARG00000099966	polr2a	90	91.025	ENSGGOG00000014800	-	96	92.995	Gorilla_gorilla
ENSDARG00000099966	polr2a	99	97.063	ENSHBUG00000018937	polr2a	100	97.063	Haplochromis_burtoni
ENSDARG00000099966	polr2a	82	94.417	ENSHGLG00000012381	POLR2A	82	94.424	Heterocephalus_glaber_female
ENSDARG00000099966	polr2a	82	94.417	ENSHGLG00100014843	POLR2A	82	94.424	Heterocephalus_glaber_male
ENSDARG00000099966	polr2a	100	97.102	ENSHCOG00000011874	polr2a	100	97.102	Hippocampus_comes
ENSDARG00000099966	polr2a	100	97.509	ENSIPUG00000002613	Polr2a	100	97.509	Ictalurus_punctatus
ENSDARG00000099966	polr2a	82	94.479	ENSSTOG00000001304	-	82	94.486	Ictidomys_tridecemlineatus
ENSDARG00000099966	polr2a	82	94.603	ENSJJAG00000013049	Polr2a	82	94.610	Jaculus_jaculus
ENSDARG00000099966	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSDARG00000099966	polr2a	99	97.101	ENSLBEG00000027652	polr2a	100	97.101	Labrus_bergylta
ENSDARG00000099966	polr2a	80	85.209	ENSLACG00000012071	POLR2A	81	85.281	Latimeria_chalumnae
ENSDARG00000099966	polr2a	89	96.845	ENSLOCG00000013863	polr2a	97	96.278	Lepisosteus_oculatus
ENSDARG00000099966	polr2a	99	91.223	ENSLAFG00000008626	-	97	94.486	Loxodonta_africana
ENSDARG00000099966	polr2a	50	93.258	ENSMFAG00000007042	-	99	93.258	Macaca_fascicularis
ENSDARG00000099966	polr2a	82	94.479	ENSMMUG00000023620	-	91	94.486	Macaca_mulatta
ENSDARG00000099966	polr2a	82	94.045	ENSMNEG00000040407	-	82	94.052	Macaca_nemestrina
ENSDARG00000099966	polr2a	81	89.375	ENSMLEG00000030263	-	99	93.258	Mandrillus_leucophaeus
ENSDARG00000099966	polr2a	100	97.306	ENSMAMG00000003351	polr2a	100	97.306	Mastacembelus_armatus
ENSDARG00000099966	polr2a	100	97.153	ENSMZEG00005021429	polr2a	100	97.153	Maylandia_zebra
ENSDARG00000099966	polr2a	50	94.190	ENSMAUG00000021055	-	99	94.190	Mesocricetus_auratus
ENSDARG00000099966	polr2a	82	94.479	ENSMICG00000013372	-	98	93.756	Microcebus_murinus
ENSDARG00000099966	polr2a	99	90.223	ENSMOCG00000018279	Polr2a	100	90.235	Microtus_ochrogaster
ENSDARG00000099966	polr2a	84	95.970	ENSMMOG00000012515	polr2a	94	95.970	Mola_mola
ENSDARG00000099966	polr2a	82	94.293	ENSMODG00000007009	-	82	94.300	Monodelphis_domestica
ENSDARG00000099966	polr2a	95	93.870	ENSMALG00000008716	polr2a	99	94.482	Monopterus_albus
ENSDARG00000099966	polr2a	82	94.479	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.486	Mus_caroli
ENSDARG00000099966	polr2a	82	94.479	ENSMUSG00000005198	Polr2a	82	94.486	Mus_musculus
ENSDARG00000099966	polr2a	82	92.341	MGP_PahariEiJ_G0017718	Polr2a	82	92.350	Mus_pahari
ENSDARG00000099966	polr2a	82	94.479	MGP_SPRETEiJ_G0017423	Polr2a	82	94.486	Mus_spretus
ENSDARG00000099966	polr2a	82	94.479	ENSMPUG00000009648	-	82	94.486	Mustela_putorius_furo
ENSDARG00000099966	polr2a	82	93.866	ENSMLUG00000009088	-	82	93.874	Myotis_lucifugus
ENSDARG00000099966	polr2a	82	94.479	ENSNGAG00000002543	Polr2a	82	94.486	Nannospalax_galili
ENSDARG00000099966	polr2a	100	95.018	ENSNBRG00000002005	polr2a	100	95.475	Neolamprologus_brichardi
ENSDARG00000099966	polr2a	82	93.007	ENSNLEG00000009460	-	82	93.016	Nomascus_leucogenys
ENSDARG00000099966	polr2a	94	95.098	ENSMEUG00000008611	-	96	86.906	Notamacropus_eugenii
ENSDARG00000099966	polr2a	80	94.378	ENSOPRG00000015116	-	99	94.378	Ochotona_princeps
ENSDARG00000099966	polr2a	87	94.456	ENSODEG00000017674	-	85	90.018	Octodon_degus
ENSDARG00000099966	polr2a	100	97.204	ENSONIG00000009231	polr2a	100	97.204	Oreochromis_niloticus
ENSDARG00000099966	polr2a	99	90.115	ENSOCUG00000017929	-	100	94.362	Oryctolagus_cuniculus
ENSDARG00000099966	polr2a	100	97.255	ENSORLG00000006431	polr2a	100	97.255	Oryzias_latipes
ENSDARG00000099966	polr2a	100	97.255	ENSORLG00020010235	polr2a	100	97.255	Oryzias_latipes_hni
ENSDARG00000099966	polr2a	100	97.153	ENSORLG00015007075	polr2a	100	97.153	Oryzias_latipes_hsok
ENSDARG00000099966	polr2a	95	98.118	ENSOMEG00000010713	polr2a	99	96.780	Oryzias_melastigma
ENSDARG00000099966	polr2a	82	94.479	ENSOGAG00000033608	-	82	94.486	Otolemur_garnettii
ENSDARG00000099966	polr2a	91	94.479	ENSOARG00000013874	-	99	94.486	Ovis_aries
ENSDARG00000099966	polr2a	81	91.818	ENSPPAG00000043734	-	82	91.760	Pan_paniscus
ENSDARG00000099966	polr2a	82	93.007	ENSPTRG00000008691	POLR2A	82	93.016	Pan_troglodytes
ENSDARG00000099966	polr2a	82	93.797	ENSPANG00000024099	-	82	93.804	Papio_anubis
ENSDARG00000099966	polr2a	81	95.933	ENSPKIG00000005727	polr2a	85	95.933	Paramormyrops_kingsleyae
ENSDARG00000099966	polr2a	98	92.471	ENSPSIG00000014006	POLR2A	100	92.384	Pelodiscus_sinensis
ENSDARG00000099966	polr2a	100	96.290	ENSPMGG00000019734	polr2a	100	96.290	Periophthalmus_magnuspinnatus
ENSDARG00000099966	polr2a	82	94.479	ENSPEMG00000012521	Polr2a	82	94.486	Peromyscus_maniculatus_bairdii
ENSDARG00000099966	polr2a	99	97.416	ENSPFOG00000007890	polr2a	99	97.416	Poecilia_formosa
ENSDARG00000099966	polr2a	99	97.416	ENSPLAG00000007399	polr2a	99	97.416	Poecilia_latipinna
ENSDARG00000099966	polr2a	99	97.416	ENSPMEG00000002071	polr2a	99	97.416	Poecilia_mexicana
ENSDARG00000099966	polr2a	100	97.458	ENSPREG00000013122	polr2a	100	97.458	Poecilia_reticulata
ENSDARG00000099966	polr2a	82	94.479	ENSPPYG00000007924	-	82	94.486	Pongo_abelii
ENSDARG00000099966	polr2a	74	95.000	ENSPCAG00000006951	-	74	95.000	Procavia_capensis
ENSDARG00000099966	polr2a	82	93.178	ENSPCOG00000025260	-	82	93.186	Propithecus_coquereli
ENSDARG00000099966	polr2a	82	94.169	ENSPVAG00000005069	-	82	94.176	Pteropus_vampyrus
ENSDARG00000099966	polr2a	100	97.204	ENSPNYG00000022340	polr2a	100	97.204	Pundamilia_nyererei
ENSDARG00000099966	polr2a	100	97.916	ENSPNAG00000011237	polr2a	100	97.916	Pygocentrus_nattereri
ENSDARG00000099966	polr2a	82	94.417	ENSRNOG00000028834	Polr2a	82	94.424	Rattus_norvegicus
ENSDARG00000099966	polr2a	93	91.873	ENSRBIG00000002471	-	92	94.114	Rhinopithecus_bieti
ENSDARG00000099966	polr2a	82	94.479	ENSRROG00000029583	-	89	93.618	Rhinopithecus_roxellana
ENSDARG00000099966	polr2a	81	50.466	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSDARG00000099966	polr2a	82	94.479	ENSSBOG00000000808	-	82	94.486	Saimiri_boliviensis_boliviensis
ENSDARG00000099966	polr2a	93	94.293	ENSSHAG00000002858	-	84	94.300	Sarcophilus_harrisii
ENSDARG00000099966	polr2a	99	97.359	ENSSFOG00015023275	polr2a	100	97.359	Scleropages_formosus
ENSDARG00000099966	polr2a	100	96.441	ENSSMAG00000009137	polr2a	100	96.441	Scophthalmus_maximus
ENSDARG00000099966	polr2a	100	97.458	ENSSDUG00000020466	polr2a	100	97.458	Seriola_dumerili
ENSDARG00000099966	polr2a	100	97.407	ENSSLDG00000020613	polr2a	100	97.407	Seriola_lalandi_dorsalis
ENSDARG00000099966	polr2a	95	89.898	ENSSARG00000005875	-	99	90.712	Sorex_araneus
ENSDARG00000099966	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSDARG00000099966	polr2a	82	93.548	ENSSSCG00000028278	-	82	93.556	Sus_scrofa
ENSDARG00000099966	polr2a	98	91.321	ENSTRUG00000012320	polr2a	81	91.321	Takifugu_rubripes
ENSDARG00000099966	polr2a	92	95.536	ENSTNIG00000010136	polr2a	100	95.536	Tetraodon_nigroviridis
ENSDARG00000099966	polr2a	74	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSDARG00000099966	polr2a	82	92.804	ENSTTRG00000014273	-	82	92.813	Tursiops_truncatus
ENSDARG00000099966	polr2a	92	94.059	ENSUAMG00000014866	-	100	91.528	Ursus_americanus
ENSDARG00000099966	polr2a	86	92.179	ENSUMAG00000015732	-	91	92.179	Ursus_maritimus
ENSDARG00000099966	polr2a	65	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSDARG00000099966	polr2a	82	94.417	ENSVVUG00000027878	-	83	94.424	Vulpes_vulpes
ENSDARG00000099966	polr2a	81	93.962	ENSXETG00000012465	polr2a	82	93.970	Xenopus_tropicalis
ENSDARG00000099966	polr2a	90	95.946	ENSXCOG00000001804	polr2a	99	94.544	Xiphophorus_couchianus
ENSDARG00000099966	polr2a	100	97.458	ENSXMAG00000015687	polr2a	100	97.458	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	-	IEA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function